arXiv subjects

Jun Lou

Publications and source records attributed to Jun Lou.

At least 19 recordsLinked to original sources

arXiv2026

Revealing the MoS2 Growth Mechanism in Chemical Vapor Deposition: Real-Time Imaging and Statistical Analysis

Chemical Vapor Deposition (CVD) is a promising method for scalable synthesis of two-dimensional transitional metal dichalcogenides (TMDs) such as MoS2, but challenges in reproducibility and controllability persist due to an incomplete understanding of their dynamic growth mechanisms. While in-situ characterization methods could provide valuable insights, it remains challenging to track a large ensemble of crystals to enable quantitative, statistical analysis. Here, we address this gap by developing and applying a semi-automated image processing pipeline to analyze in-situ optical microscopy footage of MoS2 growth. This framework enables the high-throughput reconstruction of complete growth trajectories for over 400 individual crystals from a single experiment. Our statistical analysis demonstrates that MoS2 crystallization is governed by an edge-attachment-limited mechanism rather than by precursor diffusion. Furthermore, MoS2 crystals exhibit non-competitive growth, indicating that precursor supply does not limit the growth of neighboring flakes until physical impingement occurs. These findings provide direct, quantitative evidence that advances the fundamental understanding of TMD growth, establishing a powerful methodology for rational optimization of the CVD growth of two-dimensional materials.

cond-mat.mtrl-sci↗

arXiv2026

Biological Sequence Clustering: A Survey

The rapid development of high-throughput sequencing technologies has led to an explosive increase in biological sequence data, making sequence clustering a fundamental task in large-scale bioinformatics analyses. Unlike traditional clustering problems, biological sequence clustering faces unique challenges due to the lack of direct similarity measures, strict biological constraints, and demanding requirements for both scalability and accuracy. Over the past decades, a wide variety of methods have been developed, differing in how they model sequence similarity, construct clusters, and prioritize optimization objectives. In this review, we provide a comprehensive methodological overview of biological sequence clustering algorithms. We begin by summarizing the main strategies for modeling sequence similarity, which can be divided into three stages: sequence encoding, feature generation, and similarity measurement. Next, we discuss the major clustering paradigms, including greedy incremental, hierarchical, graph-based, model-based, partitional, and deep learning approaches, highlighting their methodological characteristics and practical trade-offs. We then discuss clustering objectives from three key perspectives: scalability and resource efficiency, biological interpretability, and robustness and clustering quality. Organizing existing methods along these dimensions allows us to explore the trade-offs in biological sequence clustering and clarify the contexts in which different approaches are most appropriate. Finally, we identify current limitations and challenges, providing guidance for researchers and directions for future method development.

q-bio.GN↗

arXiv2025

SEER-VAR: Semantic Egocentric Environment Reasoner for Vehicle Augmented Reality

We present SEER-VAR, a novel framework for egocentric vehicle-based augmented reality (AR) that unifies semantic decomposition, Context-Aware SLAM Branches (CASB), and LLM-driven recommendation. Unlike existing systems that assume static or single-view settings, SEER-VAR dynamically separates cabin and road scenes via depth-guided vision-language grounding. Two SLAM branches track egocentric motion in each context, while a GPT-based module generates context-aware overlays such as dashboard cues and hazard alerts. To support evaluation, we introduce EgoSLAM-Drive, a real-world dataset featuring synchronized egocentric views, 6DoF ground-truth poses, and AR annotations across diverse driving scenarios. Experiments demonstrate that SEER-VAR achieves robust spatial alignment and perceptually coherent AR rendering across varied environments. As one of the first to explore LLM-based AR recommendation in egocentric driving, we address the lack of comparable systems through structured prompting and detailed user studies. Results show that SEER-VAR enhances perceived scene understanding, overlay relevance, and driver ease, providing an effective foundation for future research in this direction. Code and dataset will be made open source.

cs.CV↗

arXiv2025

Two-cluster test

Cluster analysis is a fundamental research issue in statistics and machine learning. In many modern clustering methods, we need to determine whether two subsets of samples come from the same cluster. Since these subsets are usually generated by certain clustering procedures, the deployment of classic two-sample tests in this context would yield extremely smaller p-values, leading to inflated Type-I error rate. To overcome this bias, we formally introduce the two-cluster test issue and argue that it is a totally different significance testing issue from conventional two-sample test. Meanwhile, we present a new method based on the boundary points between two subsets to derive an analytical p-value for the purpose of significance quantification. Experiments on both synthetic and real data sets show that the proposed test is able to significantly reduce the Type-I error rate, in comparison with several classic two-sample testing methods. More importantly, the practical usage of such two-cluster test is further verified through its applications in tree-based interpretable clustering and significance-based hierarchical clustering.

cs.LG↗

arXiv2024

In-situ Transmission Kikuchi Diffraction Tensile Testing

We present a methodology for in situ Transmission Kikuchi Diffraction (TKD) tensile testing that enables nanoscale characterization of the evolution of complex plasticity mechanisms. By integrating a modified in situ scanning electron microscope nanoindenter with a microscale push-to-pull device and a conventional Electron Backscatter Diffraction (EBSD) detector, we achieved TKD measurements at high spatial resolution during mechanical deformation. A dedicated focused ion beam procedure was developed for site-specific specimen fabrication, including lift-out, thinning, and shaping into a dog-bone geometry. The methodology was demonstrated on two case studies: (i) a metastable $\beta$-Ti single crystal, on which we quantified the initiation and evolution of nanoscale twinning and stress-induced martensitic transformation, and (ii) a $CuAl/Al_2O_3$ nanolaminate, which showed nanoscale plasticity and twinning/detwinning in a complex microstructure. Overall, this approach provides a robust alternative to in situ EBSD and transmission electron microscopy testing, facilitating detailed analysis of deformation mechanisms at the nanoscale.

cond-mat.mtrl-sci↗

arXiv2024

Chip-Scale Aligned Chiral Carbon Nanotubes Exhibiting Giant Second Harmonic Generation

Chiral carbon nanotubes (CNTs) are direct-gap semiconductors with optical properties governed by one-dimensional excitons with enormous oscillator strengths. Each species of chiral CNTs has an enantiomeric pair of left- and right-handed CNTs with nearly identical properties, but enantiomer-dependent phenomena can emerge, especially in nonlinear optical processes. Theoretical studies have predicted strong second-order nonlinearities in chiral CNTs, but no experimental quantitative verification has been reported due to the lack of macroscopically ordered assemblies of single-enantiomer chiral CNTs. Here, we report the synthesis of centimeter-scale, densely packed, aligned single-enantiomer chiral CNT films that are microfabrication-compatible. We observe giant second harmonic generation (SHG) emission from the chiral CNT film, which originates from the intrinsic chirality and inversion symmetry breaking of the atomic structure of chiral CNTs. The observed nonlinear susceptibility of the as-fabricated film reaches $4.9\times 10^2$\,pm/V at a pump wavelength of 1030\,nm, corresponding to the lowest-energy excitonic resonance, indicating $\chi_{xyz} = 1.6\times 10^3$\,pm/V for a perfectly aligned CNT crystal. Our calculations based on many-body theory correctly estimate the spectrum and magnitude of such excitonically enhanced optical nonlinearity. These results are promising for the development of scalable chiral-CNT electronics and nonlinear photonics.

physics.app-ph↗

arXiv2022

Strong Edge Stress in Molecularly Thin Organic$-$Inorganic Hybrid Ruddlesden$-$Popper Perovskites and Modulations of Their Edge Electronic Properties

Organic$-$inorganic hybrid Ruddlesden$-$Popper perovskites (HRPPs) have gained much attention for optoelectronic applications due to their high moisture resistance, good processibility under ambient conditions, and long functional lifetimes. Recent success in isolating molecularly thin hybrid perovskite nanosheets and their intriguing edge phenomena have raised the need for understanding the role of edges and the properties that dictate their fundamental behaviours. In this work, we perform a prototypical study on the edge effects in ultrathin hybrid perovskites by considering monolayer (BA)$_2$PbI$_4$ as a representative system. Based on first-principles simulations of nanoribbon models, we show that in addition to significant distortions of the octahedra network at the edges, strong edge stresses are also present in the material. Structural instabilities that arise from the edge stress could drive the relaxation process and dominate the morphological response of edges in practice. A clear downward shift of the bands at the narrower ribbons, as indicative of the edge effect, facilitates the separation of photo-excited carriers (electrons move towards the edge and holes move towards the interior part of the nanosheet). Moreover, the desorption energy of the organic molecule can also be much lower at the free edges, making it easier for functionalization and/or substitution events to take place. The findings reported in this work elucidate the underlying mechanisms responsible for edge states in HRPPs and will be important in guiding the rational design and development of high-performance layer$-$edge devices.

cond-mat.mtrl-sci↗

arXiv2021

Synthesis and Tailored Properties Towards Designer Covalent Organic Framework Thin Films and Heterostructures

Porous polymeric covalent organic frameworks (COFs) have been under intense synthetic investigation with over 100 unique structural motifs known. In order to realize the true potential of these materials, converting the powders into thin films with strict control of thickness and morphology is necessary and accomplished through techniques including interfacial synthesis, chemical exfoliation and mechanical delamination. Recent progress in the construction and tailored properties of thin film COFs are highlighted in this review, addressing mechanical properties as well as application-focused properties in filtration, electronics, sensors, electrochemical, magnetics, optoelectronics and beyond. Additionally, heterogeneous integration of these thin films with other inorganic and organic materials is discussed, revealing exciting opportunities to integrate COF thin films with other state of the art material and device systems.

cond-mat.mtrl-sci↗

arXiv2019

Opto-valleytronic imaging of atomically thin semiconductors

Transition metal dichalcogenide semiconductors represent elementary components of layered heterostructures for emergent technologies beyond conventional opto-electronics. In their monolayer form they host electrons with quantized circular motion and associated valley polarization and valley coherence as key elements of opto-valleytronic functionality. Here, we introduce two-dimensional polarimetry as means of direct imaging of the valley pseudospin degree of freedom in monolayer transition metal dichalcogenides. Using MoS$_2$ as a representative material with valley-selective optical transitions, we establish quantitative image analysis for polarimetric maps of extended crystals, and identify valley polarization and valley coherence as sensitive probes of crystalline disorder. Moreover, we find site-dependent thermal and non-thermal regimes of valley-polarized excitons in perpendicular magnetic fields. Finally, we demonstrate the potential of wide-field polarimetry for rapid inspection of opto-valleytronic devices based on atomically thin semiconductors and heterostructures.

cond-mat.mes-hall↗

arXiv2018

Room Temperature Magnetic Order in Air-Stable Ultra-Thin Iron Oxide

Certain two-dimensional (2D) materials exhibit intriguing properties such as valley polarization, ferroelectricity, superconductivity and charge-density waves. Many of these materials can be manually assembled into atomic-scale multilayer devices under ambient conditions, owing to their exceptional chemical stability. Efforts have been made to add a magnetic degree of freedom to these 2D materials via defects, but only local magnetism has been achieved. Only with the recent discoveries of 2D materials supporting intrinsic ferromagnetism have stacked spintronic devices become realistic. Assembling 2D multilayer devices with these ferromagnets under ambient conditions remains challenging due to their sensitivity to environmental degradation, and magnetic order at room temperature is rare in van der Waals materials. Here, we report the growth of air-stable ultra-thin epsilon-phase iron oxide crystals that exhibit magnetic order at room temperature. These crystals require no passivation and can be prepared in large quantity by cost-effective chemical vapor deposition (CVD). We find that the epsilon phase, which is energetically unfavorable and does not form in bulk, can be easily made in 2D down to a seven unit-cell thickness. Magneto-optical Kerr effect (MOKE) magnetometry of individual crystals shows that even at this ultrathin limit the epsilon phase exhibits robust magnetism with coercive fields of hundreds of mT. These measurements highlight the advantages of ultrathin iron oxide as a promising candidate towards air-stable 2D magnetism and integration into 2D spintronic devices.

cond-mat.mtrl-sci↗

arXiv2018

Mechanical Properties of Ultralow Density Graphene Oxide/Polydimethylsiloxane Foams

Low-density, highly porous graphene/graphene oxide (GO) based-foams have shown high performance in energy absorption applications, even under high compressive deformations. In general, foams are very effective as energy dissipative materials and have been widely used in many areas such as automotive, aerospace and biomedical industries. In the case of graphene-based foams, the good mechanical properties are mainly attributed to the intrinsic graphene and/or GO electronic and mechanical properties. Despite the attractive physical properties of graphene/GO based-foams, their structural and thermal stabilities are still a problem for some applications. For instance, they are easily degraded when placed in flowing solutions, either by the collapsing of their layers or just by structural disintegration into small pieces. Recently, a new and scalable synthetic approach to produce low-density 3D macroscopic GO structure interconnected with polydimethylsiloxane (PDMS) polymeric chains (pGO) was proposed. A controlled amount of PDMS is infused into the freeze-dried foam resulting into a very rigid structure with improved mechanical properties, such as tensile plasticity and toughness. The PDMS wets the graphene oxide sheets and acts like a glue bonding PDMS and GO sheets. In order to obtain further insights on mechanisms behind the enhanced mechanical pGO response we carried out fully atomistic molecular dynamics (MD) simulations. Based on MD results, we build up a structural model that can explain the experimentally observed mechanical behavior.

physics.app-ph↗

arXiv2017

Quantum plasmonic hot-electron injection in lateral WSe2/MoSe2 heterostructures

Lateral two-dimensional (2D) transitional metal dichalcogenide (TMD) heterostructures have recently attracted a wide attention as promising materials for optoelectronic nanodevices. Due to the nanoscale width of lateral heterojunctions, the study of their optical properties is challenging and requires using subwavelength optical characterization techniques. We investigated the photoresponse of a lateral 2D WSe2/MoSe2 heterostructure using tip-enhanced photoluminescence (TEPL) with nanoscale spatial resolution and with picoscale tip-sample distance dependence. We demonstrate the observation of quantum plasmonic effects in 2D heterostructures on a non-metallic substrate, and we report the nano-optical measurements of the lateral 2D TMD heterojunction width of ~ 150 nm and the charge tunneling distance of ~ 20 pm. Controlling the plasmonic tip location allows for both nano-optical imaging and plasmon-induced hot electron injection into the heterostructure. By adjusting the tip-sample distance, we demonstrated the controllability of the hot-electron injection via the competition of two quantum plasmonic photoluminescence (PL) enhancement and quenching mechanisms. The directional charge transport in the depletion region leads to the increased hot electron injection, enhancing the MoSe2 PL signal. The properties of the directional hot-electron injection in the quantum plasmonic regime make the lateral 2D MoSe2/WSe2 heterostructures promising for quantum nanodevices with tunable photoresponse.

physics.optics↗

arXiv2017

Janus Monolayer Transition Metal Dichalcogenides

A novel crystal configuration of sandwiched S-Mo-Se structure (Janus SMoSe) at the monolayer limit has been synthesized and carefully characterized in this work. By controlled sulfurization of monolayer MoSe2 the top layer of selenium atoms are substituted by sulfur atoms while the bottom selenium layer remains intact. The peculiar structure of this new material is systematically investigated by Raman, photoluminescence and X-ray photoelectron spectroscopy and confirmed by transmission-electron microscopy and time-of-flight secondary ion mass spectrometry. Density-functional theory calculations are performed to better understand the Raman vibration modes and electronic structures of the Janus SMoSe monolayer, which are found to correlate well with corresponding experimental results. Finally, high basal plane hydrogen evolution reaction (HER) activity is discovered for the Janus monolayer and DFT calculation implies that the activity originates from the synergistic effect of the intrinsic defects and structural strain inherent in the Janus structure.

cond-mat.mtrl-sci↗

arXiv2017

Nano-optical imaging of monolayer MoSe2 using tip-enhanced photoluminescence

Band gap tuning in two-dimensional transitional metal dichalcogenides (TMDs) is crucial in fabricating new optoelectronic devices. High resolution photoluminescence (PL) microscopy is needed for accurate band gap characterization. We performed tip-enhanced photoluminescence (TEPL) measurements of monolayer MoSe2 with nanoscale spatial resolution, providing an improved characterization of the band gap correlated with the topography compared with the conventional far field spectroscopy. We also observed PL shifts at the edges and investigated the spatial dependence of the TEPL enhancement factors.

physics.optics↗

arXiv2016

Thickness-Dependent and Magnetic-Field-Driven Suppression of Antiferromagnetic Order in Thin V$_{5}$S$_{8}$ Single Crystals

With materials approaching the 2d limit yielding many exciting systems with intriguing physical properties and promising technological functionalities, understanding and engineering magnetic order in nanoscale, layered materials is generating keen interest. One such material is V$_{5}$S$_{8}$, a metal with an antiferromagnetic ground state below the N\'eel temperature $T_{N} \sim$ 32 K and a prominent spin-flop signature in the magnetoresistance (MR) when $H||c \sim$ 4.2 T. Here we study nanoscale-thickness single crystals of V$_{5}$S$_{8}$, focusing on temperatures close to $T_{N}$ and the evolution of material properties in response to systematic reduction in crystal thickness. Transport measurements just below $T_{N}$ reveal magnetic hysteresis that we ascribe to a metamagnetic transition, the first-order magnetic field-driven breakdown of the ordered state. The reduction of crystal thickness to $\sim$ 10 nm coincides with systematic changes in the magnetic response: $T_{N}$ falls, implying that antiferromagnetism is suppressed; and while the spin-flop signature remains, the hysteresis disappears, implying that the metamagnetic transition becomes second order as the thickness approaches the 2d limit. This work demonstrates that single crystals of magnetic materials with nanometer thicknesses are promising systems for future studies of magnetism in reduced dimensionality and quantum phase transitions.

cond-mat.str-el↗

arXiv2016

Self-optimizing layered hydrogen evolution catalyst with high basal-plane activity

Hydrogen is a promising energy carrier and key agent for many industrial chemical processes1. One method for generating hydrogen sustainably is via the hydrogen evolution reaction (HER), in which electrochemical reduction of protons is mediated by an appropriate catalyst-traditionally, an expensive platinum-group metal. Scalable production requires catalyst alternatives that can lower materials or processing costs while retaining the highest possible activity. Strategies have included dilute alloying of Pt2 or employing less expensive transition metal alloys, compounds or heterostructures (e.g., NiMo, metal phosphides, pyrite sulfides, encapsulated metal nanoparticles)3-5. Recently, low-cost, layered transition-metal dichalcogenides (MX2)6 based on molybdenum and tungsten have attracted substantial interest as alternative HER catalysts7-11. These materials have high intrinsic per-site HER activity; however, a significant challenge is the limited density of active sites, which are concentrated at the layer edges.8,10,11. Here we use theory to unravel electronic factors underlying catalytic activity on MX2 surfaces, and leverage the understanding to report group-5 MX2 (H-TaS2 and H-NbS2) electrocatalysts whose performance instead derives from highly active basal-plane sites. Beyond excellent catalytic activity, they are found to exhibit an unusual ability to optimize their morphology for enhanced charge transfer and accessibility of active sites as the HER proceeds. This leads to long cycle life and practical advantages for scalable processing. The resulting performance is comparable to Pt and exceeds all reported MX2 candidates.

cond-mat.mtrl-sci↗

arXiv2015

Spin coherence and dephasing of localized electrons in monolayer MoS$_2$

We report a systematic study of coherent spin precession and spin dephasing in electron-doped monolayer MoS$_2$. Using time-resolved Kerr rotation spectroscopy and applied in-plane magnetic fields, a nanosecond-timescale Larmor spin precession signal commensurate with $g$-factor $|g_0|\simeq 1.86$ is observed in several different MoS$_2$ samples grown by chemical vapor deposition. The dephasing rate of this oscillatory signal increases linearly with magnetic field, suggesting that the coherence arises from a sub-ensemble of localized electron spins having an inhomogeneously-broadened distribution of $g$-factors, $g_0 + \Delta g$. In contrast to $g_0$, $\Delta g$ is sample-dependent and ranges from 0.042 to 0.115.

cond-mat.mtrl-sci↗

arXiv2015

Generation and Detection of Surface Plasmon Polaritons by Transition Metal Dichalcogenides for Chip-level Electronic-Photonic Integrated Circuits

The monolithic integration of electronics and photonics has attracted enormous attention due to its potential applications. However, the realization of such hybrid circuits has remained a challenge because it requires optical communication at nanometer scales. A major challenge to this integration is the identification of a suitable material. After discussing the material aspect of the challenge, we identified atomically thin transition metal dichalcogenides (TMDs) as a perfect material platform to implement the circuit. The selection of TMDs is based on their very distinct property: monolayer TMDs are able to emit and absorb light at the same wavelength determined by direct exciton transitions. To prove the concept, we fabricated simple devices consisting of silver nanowires as plasmonic waveguides and monolayer TMDs as active optoelectronic media. Using photoexcitation, direct optical imaging and spectral analysis, we demonstrated generation and detection of surface plasmon polaritons by monolayer TMDs. Regarded as novel materials for electronics and photonics, transition metal dichalcogenides are expected to find new applications in next generation integrated circuits.

cond-mat.mes-hall↗