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Jun Zhou

Publications and source records attributed to Jun Zhou.

At least 379 records · Page 21Linked to original sources

GraTO: Graph Neural Network Framework Tackling Over-smoothing with Neural Architecture Search

Current Graph Neural Networks (GNNs) suffer from the over-smoothing problem, which results in indistinguishable node representations and low model performance with more GNN layers. Many methods have been put forward to tackle this problem in recent years. However, existing tackling over-smoothing methods emphasize model performance and neglect the over-smoothness of node representations. Additional, different approaches are applied one at a time, while there lacks an overall framework to jointly leverage multiple solutions to the over-smoothing challenge. To solve these problems, we propose GraTO, a framework based on neural architecture search to automatically search for GNNs architecture. GraTO adopts a novel loss function to facilitate striking a balance between model performance and representation smoothness. In addition to existing methods, our search space also includes DropAttribute, a novel scheme for alleviating the over-smoothing challenge, to fully leverage diverse solutions. We conduct extensive experiments on six real-world datasets to evaluate GraTo, which demonstrates that GraTo outperforms baselines in the over-smoothing metrics and achieves competitive performance in accuracy. GraTO is especially effective and robust with increasing numbers of GNN layers. Further experiments bear out the quality of node representations learned with GraTO and the effectiveness of model architecture. We make cide of GraTo available at Github (\url{https://github.com/fxsxjtu/GraTO}).

cs.LG↗

Emergent Topological Superconductor by Charge Density Wave Transition

Many-body instabilities and topological physics are two attractive topics in condensed matter physics. It is intriguing to explore the interplay between these phenomena in a single quantum material. Here, using the prototypical charge density wave (CDW) material monolayer 1H-NbSe$_2$ as an example, we show how momentum-dependent electron-phonon coupling drives the CDW transition from $3\times3$ to $2\times2$ phase under electron doping. More interestingly, we find the coexistence of superconductivity and nontrivial topology in one of the two $2\times2$ CDW phases, the latter of which is identified by the nonzero Z$_2$ invariant with ideal Dirac cone edge states near the Fermi level. A similar CDW transition-induced topological superconductor has also been confirmed in monolayer 1H-TaSe$_2$. Our findings not only reveal a unique and general method to introduce nontrivial topology by CDW transition, but also provide an ideal platform to modulate different quantum orders by electron doping, thus stimulating experimental interest.

cond-mat.supr-con↗

PP-StructureV2: A Stronger Document Analysis System

A large amount of document data exists in unstructured form such as raw images without any text information. Designing a practical document image analysis system is a meaningful but challenging task. In previous work, we proposed an intelligent document analysis system PP-Structure. In order to further upgrade the function and performance of PP-Structure, we propose PP-StructureV2 in this work, which contains two subsystems: Layout Information Extraction and Key Information Extraction. Firstly, we integrate Image Direction Correction module and Layout Restoration module to enhance the functionality of the system. Secondly, 8 practical strategies are utilized in PP-StructureV2 for better performance. For Layout Analysis model, we introduce ultra light-weight detector PP-PicoDet and knowledge distillation algorithm FGD for model lightweighting, which increased the inference speed by 11 times with comparable mAP. For Table Recognition model, we utilize PP-LCNet, CSP-PAN and SLAHead to optimize the backbone module, feature fusion module and decoding module, respectively, which improved the table structure accuracy by 6\% with comparable inference speed. For Key Information Extraction model, we introduce VI-LayoutXLM which is a visual-feature independent LayoutXLM architecture, TB-YX sorting algorithm and U-DML knowledge distillation algorithm, which brought 2.8\% and 9.1\% improvement respectively on the Hmean of Semantic Entity Recognition and Relation Extraction tasks. All the above mentioned models and code are open-sourced in the GitHub repository PaddleOCR.

cs.CV↗

MRI-based Material Mass Density and Relative Stopping Power Estimation via Deep Learning for Proton Therapy

Magnetic Resonance Imaging (MRI) is increasingly incorporated into treatment planning, because of its superior soft tissue contrast used for tumor and soft tissue delineation versus computed tomography (CT). However, MRI cannot directly provide mass density or relative stopping power (RSP) maps required for proton radiotherapy dose calculation. To demonstrate the feasibility of MRI-only based mass density and RSP estimation using deep learning (DL) for proton radiotherapy. A DL-based framework was developed to discover underlying voxel-wise correlation between MR images and mass density and RSP. Five tissue substitute phantoms including skin, muscle, adipose, 45% hydroxyapatite (HA), and spongiosa bone were customized for MRI scanning based on material composition information from ICRP reports. Two animal tissue phantoms made of pig brain and liver were prepared for DL training. In the phantom study, two DL models were trained: one containing clinical T1 and T2 MRIs and another incorporating zero echo time (ZTE) MRIs as input. In the patient application study, two DL models were trained: one including T1 and T2 MRIs as input, and one incorporating synthetic dual-energy computed tomography (sDECT) images to provide bone tissue information. In the phantom study, DL model based on T1 and T2 MRI demonstrated higher accuracy mass density and RSP estimation in skin, muscle, adipose, brain, and liver with mean absolute percentage errors (MAPE) of 0.42%, 0.14%, 0.19%, 0.78% and 0.26% for mass density and 0.30%, 0.11%, 0.16%, 0.61% and 0.23% for RSP, respectively. DL model incorporating ZTE MRI improved the accuracy of mass density and RSP estimation in 45% HA and spongiosa bone with MAPE at 0.23% and 0.09% for mass density and 0.19% and 0.07% for RSP, respectively. Results show feasibility of MRI-only based mass density and RSP estimation for proton therapy treatment planning using DL method.

physics.med-ph↗

Feasibility Study of Hybrid Inverse Planning with Transmission Beams and Single-energy Spread-out Bragg Peaks for Proton Flash Radiotherapy

Ultra-high dose rate (FLASH) proton planning with only transmission beams (TBs) has limitations in normal tissue sparing. The single-energy spread-out Bragg peaks (SESOBPs) of FLASH dose rate have been demonstrated feasible for proton FLASH planning. A hybrid inverse optimization method was developed to combine the TBs and SESOBPs (TB-SESOBP) for FLASH planning. The SESOBPs were generated from spreading out the BPs by pre-designed general bar ridge filters and placed at the central target by range shifters to obtain a uniform dose within the target. The SESOBPs and TBs were fully sampled field-by-field allowing automatic spot selection and weighting in the optimization process. The TB-SESOBP plans were validated in comparison with the TB only (TB-only) plans and the plans with the combination of TBs and BPs (TB-BP) regarding 3D dose and dose rate distributions for five lung cases. Comparing to the TB-only plans, the mean spinal cord D1.2cc drastically reduced 41%, the mean lung V7Gy and V7.4Gy moderately reduced by up to 17% and the target dose homogeneity slightly increased in the TB-SESOBP plans. Comparable dose homogeneity was achieved in both TB-SESOBP and TB-BP plans. Besides, prominent improvements were achieved in lung sparing for the cases of relatively large targets by the TB-SESOBP plans comparing to the TB-BP plans. The targets were fully covered with the FLASH dose rate in all the three plans. For the OARs, V40Gy/s = 100% was achieved by the TB-only plans while V40Gy/s > 85% was obtained by the other two plans. We have demonstrated that the hybrid TB-SESOBP planning was feasible to achieve FLASH dose rate for proton therapy. The hybrid TB-SESOBP planning has great potential in improving OAR sparing while maintaining high target dose homogeneity, and can be potentially implemented for adaptive radiotherapy.

physics.med-ph↗

Measurement of the time structure of FLASH beams using prompt gamma rays and secondary neutrons as surrogates

We aim to investigate the feasibility of online monitoring of irradiation time (IRT) and scan time for FLASH radiotherapy using a pixelated semiconductor detector. Measurements of the time structure of FLASH irradiations were performed using fast, pixelated spectral detectors, AdvaPIX-TPX3 and Minipix-TPX3. The latter has a fraction of its sensor coated with a neutron sensitive material. With little or no dead time and an ability to resolve events that are closely spaced in time (tens of ns), both detectors can accurately determine IRTs as long as pile-ups are avoided. To avoid pile-ups, we placed the detectors beyond the Bragg peak or at a large scattering angle. We acquired prompt gamma rays and secondary neutrons and calculated IRTs based on timestamps of the first (beam-on) and the last (beam-off) charged species. We also measured scan times in x, y, and diagonal directions. We performed these measurements for a single spot, a small animal field, a patient field, and a ridge filter optimized field to demonstrate in vivo online monitoring of IRT. All measurements were compared to vendor log files. Differences between measurements and log files for a single spot, a small animal field, and a patient field were within 1%, 0.3% and 1%, respectively. In vivo monitoring of IRTs was accurate within 0.1% for AdvaPIX-TPX3 and within 6.1% for Minipix-TPX3. The scan times in x, y, and diagonal directions were 4.0, 3.4, and 4.0 ms, respectively. Overall, the AdvaPIX-TPX3 can measure FLASH IRTs within 1% accuracy, indicating that prompt gamma rays are a good surrogate for primary protons. The Minipix-TPX3 showed a higher discrepancy, suggesting a need for further investigation. The scan times (3.4 \pm 0.05 ms) in the 60-mm distance of y-direction were less than (4.0 \pm 0.06 ms) in the 24-mm distance of x-direction, confirming the much faster scanning speed of the Y magnets than that of X.

physics.med-ph↗

AHEAD: A Triple Attention Based Heterogeneous Graph Anomaly Detection Approach

Graph anomaly detection on attributed networks has become a prevalent research topic due to its broad applications in many influential domains. In real-world scenarios, nodes and edges in attributed networks usually display distinct heterogeneity, i.e. attributes of different types of nodes show great variety, different types of relations represent diverse meanings. Anomalies usually perform differently from the majority in various perspectives of heterogeneity in these networks. However, existing graph anomaly detection approaches do not leverage heterogeneity in attributed networks, which is highly related to anomaly detection. In light of this problem, we propose AHEAD: a heterogeneity-aware unsupervised graph anomaly detection approach based on the encoder-decoder framework. Specifically, for the encoder, we design three levels of attention, i.e. attribute level, node type level, and edge level attentions to capture the heterogeneity of network structure, node properties and information of a single node, respectively. In the decoder, we exploit structure, attribute, and node type reconstruction terms to obtain an anomaly score for each node. Extensive experiments show the superiority of AHEAD on several real-world heterogeneous information networks compared with the state-of-arts in the unsupervised setting. Further experiments verify the effectiveness and robustness of our triple attention, model backbone, and decoder in general.

cs.SI↗

SO(3)-Pose: SO(3)-Equivariance Learning for 6D Object Pose Estimation

6D pose estimation of rigid objects from RGB-D images is crucial for object grasping and manipulation in robotics. Although RGB channels and the depth (D) channel are often complementary, providing respectively the appearance and geometry information, it is still non-trivial how to fully benefit from the two cross-modal data. From the simple yet new observation, when an object rotates, its semantic label is invariant to the pose while its keypoint offset direction is variant to the pose. To this end, we present SO(3)-Pose, a new representation learning network to explore SO(3)-equivariant and SO(3)-invariant features from the depth channel for pose estimation. The SO(3)-invariant features facilitate to learn more distinctive representations for segmenting objects with similar appearance from RGB channels. The SO(3)-equivariant features communicate with RGB features to deduce the (missed) geometry for detecting keypoints of an object with the reflective surface from the depth channel. Unlike most of existing pose estimation methods, our SO(3)-Pose not only implements the information communication between the RGB and depth channels, but also naturally absorbs the SO(3)-equivariance geometry knowledge from depth images, leading to better appearance and geometry representation learning. Comprehensive experiments show that our method achieves the state-of-the-art performance on three benchmarks.

cs.CV↗

Decisive role of electron-phonon coupling for phonon and electron instabilities in transition metal dichalcogenides

The origin of the charge density wave (CDW) in transition metal dichalcognides has been in hot debate and no conclusive agreement has been reached. Here, we propose an ab-initio framework for an accurate description of both Fermi surface nesting and electron-phonon coupling (EPC) and systematically investigate their roles in the formation of CDW. Using monolayer 1H-NbSe$_2$ and 1T-VTe$_2$ as representative examples, we show that it is the momentum-dependent EPC softens the phonon frequencies, which become imaginary (phonon instabilities) at CDW vectors (indicating CDW formation). Besides, the distribution of the CDW gap opening (electron instabilities) can be correctly predicted only if EPC is included in the mean-field model. These results emphasize the decisive role of EPC in the CDW formation. Our analytical process is general and can be applied to other CDW systems.

cond-mat.mtrl-sci↗

Abnormal Phonon Angular Momentum due to Off-diagonal Elements in Density Matrix induced by Temperature Gradient

Nonzero mean value of phonon angular momentum (PAM) in chiral materials can be generated when a temperature gradient is applied. We find that both diagonal and off-diagonal terms of PAM contribute to mean PAM by using the Kubo formula where both diagonal and off-diagonal elements of the heat current operator are considered. The calculation results show that the off-diagonal term is dominant when the phonon scattering is strong enough. This finding reveals that the quantum transition between different phonon modes induced by temperature gradient strongly affects the local atomic rotation. Our discovery provides an explanation of the recently observed chiral phonon activated spin Seebeck effect.

cond-mat.mes-hall↗

Multimodal Imaging-based Material Mass Density Estimation for Proton Therapy Using Physics-Constrained Deep Learning

Mapping computed tomography (CT) number to material property dominates the proton range uncertainty. This work aims to develop a physics-constrained deep learning-based multimodal imaging (PDMI) framework to integrate physics, deep learning, magnetic resonance imaging (MRI), and advanced dual-energy CT (DECT) to derive accurate patient mass density maps. Seven tissue substitute MRI phantoms were used for PDMI-based material calibration. The training inputs are from MRI and twin-beam dual-energy images acquired at 120 kVp with gold and tin filters. The feasibility investigation included an empirical DECT correlation and four residual networks (ResNet) derived from different training inputs and strategies by the PDMI framework. PRN-MR-DE and RN-MR-DE denote ResNet trained with and without a physics constraint using MRI and DECT images. PRN-DE and RN-DE represent ResNet trained with and without a physics constraint using DECT-only images. For the tissue surrogate study, PRN-MR-DE, PRN-DE, and RN-MR-DE result in mean mass density errors: -0.72%, 2.62%, -3.58% for adipose; -0.03%, -0.61%, and -0.18% for muscle; -0.58%, -1.36%, and -4.86% for 45% HA bone. The retrospective patient study indicated that PRN-MR-DE predicted the densities of soft tissue and bone within expected intervals based on the literature survey, while PRN-DE generated large density deviations. The proposed PDMI framework can generate accurate mass density maps using MRI and DECT images. The physics-constrained training can further enhance model efficacy, making PRN-MR-DE outperform RN-MR-DE. The patient investigation also shows that the PDMI framework has the potential to improve proton range uncertainty with accurate patient mass density maps.

physics.med-ph↗

Gaia: Graph Neural Network with Temporal Shift aware Attention for Gross Merchandise Value Forecast in E-commerce

E-commerce has gone a long way in empowering merchants through the internet. In order to store the goods efficiently and arrange the marketing resource properly, it is important for them to make the accurate gross merchandise value (GMV) prediction. However, it's nontrivial to make accurate prediction with the deficiency of digitized data. In this article, we present a solution to better forecast GMV inside Alipay app. Thanks to graph neural networks (GNN) which has great ability to correlate different entities to enrich information, we propose Gaia, a graph neural network (GNN) model with temporal shift aware attention. Gaia leverages the relevant e-seller' sales information and learn neighbor correlation based on temporal dependencies. By testing on Alipay's real dataset and comparing with other baselines, Gaia has shown the best performance. And Gaia is deployed in the simulated online environment, which also achieves great improvement compared with baselines.

cs.LG↗

An Integrated Biological Optimization framework for proton SBRT FLASH treatment planning allows dose, dose rate, and LET optimization using patient-specific ridge filters

Purpose: Patient-specific ridge filters can modulate proton energy to obtain a conformal dose. We describe a new framework for optimization of filter design and spot maps to meet the unique demands of FLASH radiotherapy. We demonstrate an Integrated Biological Optimization IMPT (IBO-IMPT) approach for optimization of dose, dose-averaged dose rate (DADR), and dose-averaged LET (LETd). Methods: We developed inverse planning software to design patient-specific ridge filters that spread the Bragg peak from a fixed-energy, 250 MeV beam to a proximal beam-specific planning target volume. The software optimizes patient-specific ridge filter and uses a Monte Carlo calculation engine, based on Geant4, to provide dose and LET influence matrices. Plan optimization, using matRAD, accommodates the IBO-IMPT objective function considering dose, dose rate, and LET simultaneously with minimum MU constraints. The framework enables design of both regularly spaced and sparse-optimized ridge filters, which allow faster delivery and selective LET optimization. Volume distributions and histograms for dose, DADR, and LETd are compared using evaluation structures specific to the heart and lung. Results: We used IBO-IMPT to design ridge filters for a central lung tumor patient. The IBO-IMPT framework selectively spared heart and lung by reducing LET and increasing dose rate, relative to IMPT planning. Sparse-optimized ridge filters were superior to regularly spaced ridge filters in dose rate. Together, these innovations substantially increased the DADR in the heart and lung while maintaining good target coverage. The volume that received a FLASH dose rate of higher 40 Gy/second increased by 31% for heart and 50% for lung. Conclusion: This proof-of-concept study demonstrates the feasibility of using an IBO-IMPT framework to accomplish proton FLASH SBPT, accounting for dose, DADR, and LETd simultaneously.

physics.med-ph↗

Agriculture-Vision Challenge 2022 -- The Runner-Up Solution for Agricultural Pattern Recognition via Transformer-based Models

The Agriculture-Vision Challenge in CVPR is one of the most famous and competitive challenges for global researchers to break the boundary between computer vision and agriculture sectors, aiming at agricultural pattern recognition from aerial images. In this paper, we propose our solution to the third Agriculture-Vision Challenge in CVPR 2022. We leverage a data pre-processing scheme and several Transformer-based models as well as data augmentation techniques to achieve a mIoU of 0.582, accomplishing the 2nd place in this challenge.

cs.CV↗

BadDet: Backdoor Attacks on Object Detection

Deep learning models have been deployed in numerous real-world applications such as autonomous driving and surveillance. However, these models are vulnerable in adversarial environments. Backdoor attack is emerging as a severe security threat which injects a backdoor trigger into a small portion of training data such that the trained model behaves normally on benign inputs but gives incorrect predictions when the specific trigger appears. While most research in backdoor attacks focuses on image classification, backdoor attacks on object detection have not been explored but are of equal importance. Object detection has been adopted as an important module in various security-sensitive applications such as autonomous driving. Therefore, backdoor attacks on object detection could pose severe threats to human lives and properties. We propose four kinds of backdoor attacks for object detection task: 1) Object Generation Attack: a trigger can falsely generate an object of the target class; 2) Regional Misclassification Attack: a trigger can change the prediction of a surrounding object to the target class; 3) Global Misclassification Attack: a single trigger can change the predictions of all objects in an image to the target class; and 4) Object Disappearance Attack: a trigger can make the detector fail to detect the object of the target class. We develop appropriate metrics to evaluate the four backdoor attacks on object detection. We perform experiments using two typical object detection models -- Faster-RCNN and YOLOv3 on different datasets. More crucially, we demonstrate that even fine-tuning on another benign dataset cannot remove the backdoor hidden in the object detection model. To defend against these backdoor attacks, we propose Detector Cleanse, an entropy-based run-time detection framework to identify poisoned testing samples for any deployed object detector.

cs.CV↗

RVAE-LAMOL: Residual Variational Autoencoder to Enhance Lifelong Language Learning

Lifelong Language Learning (LLL) aims to train a neural network to learn a stream of NLP tasks while retaining knowledge from previous tasks. However, previous works which followed data-free constraint still suffer from catastrophic forgetting issue, where the model forgets what it just learned from previous tasks. In order to alleviate catastrophic forgetting, we propose the residual variational autoencoder (RVAE) to enhance LAMOL, a recent LLL model, by mapping different tasks into a limited unified semantic space. In this space, previous tasks are easy to be correct to their own distribution by pseudo samples. Furthermore, we propose an identity task to make the model is discriminative to recognize the sample belonging to which task. For training RVAE-LAMOL better, we propose a novel training scheme Alternate Lag Training. In the experiments, we test RVAE-LAMOL on permutations of three datasets from DecaNLP. The experimental results demonstrate that RVAE-LAMOL outperforms naïve LAMOL on all permutations and generates more meaningful pseudo-samples.

cs.CL↗

KGNN: Distributed Framework for Graph Neural Knowledge Representation

Knowledge representation learning has been commonly adopted to incorporate knowledge graph (KG) into various online services. Although existing knowledge representation learning methods have achieved considerable performance improvement, they ignore high-order structure and abundant attribute information, resulting unsatisfactory performance on semantics-rich KGs. Moreover, they fail to make prediction in an inductive manner and cannot scale to large industrial graphs. To address these issues, we develop a novel framework called KGNN to take full advantage of knowledge data for representation learning in the distributed learning system. KGNN is equipped with GNN based encoder and knowledge aware decoder, which aim to jointly explore high-order structure and attribute information together in a fine-grained fashion and preserve the relation patterns in KGs, respectively. Extensive experiments on three datasets for link prediction and triplet classification task demonstrate the effectiveness and scalability of KGNN framework.

cs.LG↗

Vertically Federated Graph Neural Network for Privacy-Preserving Node Classification

Recently, Graph Neural Network (GNN) has achieved remarkable progresses in various real-world tasks on graph data, consisting of node features and the adjacent information between different nodes. High-performance GNN models always depend on both rich features and complete edge information in graph. However, such information could possibly be isolated by different data holders in practice, which is the so-called data isolation problem. To solve this problem, in this paper, we propose VFGNN, a federated GNN learning paradigm for privacy-preserving node classification task under data vertically partitioned setting, which can be generalized to existing GNN models. Specifically, we split the computation graph into two parts. We leave the private data (i.e., features, edges, and labels) related computations on data holders, and delegate the rest of computations to a semi-honest server. We also propose to apply differential privacy to prevent potential information leakage from the server. We conduct experiments on three benchmarks and the results demonstrate the effectiveness of VFGNN.

cs.LG↗