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Jun-Yi Wang

Publications and source records attributed to Jun-Yi Wang.

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Ai2-Kit: Streamlining AI-Accelerated Ab Initio Workflows for Complex Chemical Systems

Molecular simulations of complex chemical systems, such as catalysis, electrochemistry, and energy storage, often need to capture the interplay of effects such as electronic structure, finite-temperature fluctuations, and electric-field response. Such complexity is difficult to address with traditional ab initio calculations, which are limited by the time and length scales they can reach. AI-accelerated ab initio (AI2) methods use machine learning potentials trained on first-principles data to replace expensive electronic-structure calculations, extending ab initio accuracy to these regimes, but their routine application requires reliable workflows that connect first-principles calculations, model training, molecular dynamics, enhanced sampling, trajectory analysis, and HPC orchestration. Here we present ai2-kit, a software toolkit for developing accessible, reproducible, and extensible AI2 workflows. ai2-kit provides high-semantic-density command-line interfaces and Python APIs for structure and dataset conversion, batch task generation, active-learning screening, job orchestration, and workflow recovery. We demonstrate ai2-kit in four representative applications: active-learning-based machine learning potential construction, free-energy perturbation for redox and acid-base processes, electrochemical machine learning potentials for electrified interfaces, and spectroscopies from machine learning molecular dynamics. ai2-kit also provides AI-agent skills that help users adapt these use cases into customized workflows for their own chemical systems and computational software stacks. Together, ai2-kit helps turn AI2 methods from bespoke computational protocols into reusable and extensible workflows for complex chemical systems, from model construction to property prediction.

physics.chem-ph

Temporal evolution of long-timescale periodicities in ULX NGC 5408 X-1

Context. NGC 5408 X-1 is one of the few ultraluminous X-ray sources with an extensive monitoring program in X-rays (a temporal baseline of 4.2 yr), making it one of the most suitable candidates to study the long-timescale quasi-periodic oscillations (QPOs). Aims. Previous timing analysis of the Swift data of NGC 5408 X-1 led to detection of multiple periodicities ranging from 2.6 d to 230 d. In this paper, we focus on the statistical significance and the temporal evolution of these periodicities. Methods. A time-series analysis technique in the time-frequency domain, the weighted wavelet Z-transform (WWZ), was employed to identify the periodicities and trace their variations with time. Results. Three periodic components were detected from the WWZ periodogram, corresponding to periods of 2.65$\pm$0.01 d, 115.4$\pm$14.4 d and 189.1$\pm$15.2 d. All three have statistical significance higher than 99.74%. The 2.65-d periodicity is quite stable in the majority of the light curve. The 115-d periodicity is the most prominent but appears variable. The 189-d periodicity is persistent across the whole time coverage. It shows a steadily decreasing trend from the beginning (193 d period) to the end (181 d period). Conclusions. The long-timescale periodicities in NGC 5408 X-1 are most likely of super-orbital origin, and are probably associated with the precession of a warped accretion disc. The disc may have been broken into two distinct planes with different precessing periods, i.e. the 189-d and 115-d periodicities corresponding to the outer and inner disc, respectively.

astro-ph.HE

Confirming the 115.5-day periodicity in the X-ray light curve of ULX NGC 5408 X-1

The Swift/XRT light curve of the ultraluminous X-ray (ULX) source NGC 5408 X-1 was re-analyzed with two new numerical approaches, Weighted Wavelet $Z$-transform (WWZ) and CLEANest, that are different from previous studies. Both techniques detected a prominent periodicity with a time scale of $115.5\pm1.5$ days, in excellent agreement with the detection of the same periodicity first reported by Strohmayer (2009). Monte Carlo simulation was employed to test the statisiticak confidence of the 115.5-day periodicity, yielding a statistical significance of $> 99.98%$ (or $>3.8σ$). The robust detection of the 115.5-day quasi-periodic oscillations (QPOs), if it is due to the orbital motion of the binary, would infer a mass of a few thousand $M_\odot$ for the central black hole, implying an intermediate-mass black hole in NGC 5408 X-1.

astro-ph.HE

Periodic Radio Variability in NRAO 530: Phase Dispersion Minimization Analysis

In this paper, a periodicity analysis of the radio light curves of the blazar NRAO 530 at 14.5, 8.0, and 4.8 GHz is presented employing an improved Phase Dispersion Minimization (PDM) technique. The result, which shows two persistent periodic components of $ \sim 6$ and $ \sim 10$ years at all three frequencies, is consistent with the results obtained with the Lomb-Scargle periodogram and weighted wavelet Z-transform algorithms. The reliability of the derived periodicities is confirmed by the Monte Carlo numerical simulations which show a high statistical confidence. (Quasi-)Periodic fluctuations of the radio luminosity of NRAO 530 might be associated with the oscillations of the accretion disk triggered by hydrodynamic instabilities of the accreted flow. \keywords{methods: statistical -- galaxies: active -- galaxies: quasar: individual: NRAO 530}

astro-ph.HE