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Junchao Li

Publications and source records attributed to Junchao Li.

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Science Edge Evaluation: SEE the Missing Step Toward Real Scientific Discovery

Large language models (LLMs) are increasingly involved in scientific discovery, yet it remains unclear whether they can support complex real laboratory science. Here we introduce Science Edge Evaluation (SEE), a multimodal benchmark of expert-curated questions grounded in peer-reviewed literature and experimental practice in chemistry, biology, and materials science. Evaluation of 19 multimodal large language models (MLLMs) shows that even the best-performing model reaches only 48.7% accuracy. Moreover, general-purpose models outperform science-specialized models on average. In the visual-agent evaluation, the use of tools increases the best accuracy to 52.7%. Tool use can expand the information available to models, but more information does not necessarily lead to reliable scientific reasoning. The key challenge is whether models can manage tool-derived information within the boundaries of the original experimental evidence. Together, these findings reveal that current MLLMs still cannot reliably make justified and evidence-bounded inferences from experimental results, which is an essential capability in real scientific discovery. Bridging this gap requires MLLMs to transition from explaining established scientific concepts to deriving novel and evidence-based insights from experimental data.

cs.AI

A Measurement Study of Cryptographic Misuse in Embodied AI Mobile Applications

Embodied AI (EAI) mobile applications are evolving from auxiliary user interfaces into active control-path components, directly linking mobile-side cryptographic security to cyber-physical trust. Despite this shift, existing security research predominantly focuses on embodied AI devices and cloud infrastructures, leaving the mobile control layer largely unexplored as a critical attack surface. To bridge this gap, we present the first large-scale measurement study of cryptographic misuse within the EAI mobile ecosystem. We construct EAIAppZoo, a benchmark of 507 real-world applications across six EAI domains, and employ an automated semantic-aware analysis pipeline to measure the prevalence and characteristics of five major cryptographic failure modes. Our measurement yields 12,975 misuse findings (with an evaluated precision of 80.74\%), revealing that these cryptographic failures are driven by EAI-specific engineering constraints rather than random developer errors. We uncover structural security trade-offs: latency-sensitive control paths systematically weaken transport protection, while the heavy reliance on offline device provisioning and legacy IoT SDKs exacerbates the local hardcoding of authentication credentials. Through real-world case studies, we demonstrate how these mobile-side cryptographic flaws bypass nominal network protections, enabling adversaries to intercept command channels and hijack the physical control of EAI entities. Ultimately, our findings highlight that mobile applications have become a fragile, yet overlooked, cryptographic trust boundary in cyber-physical systems.

cs.CR

The Role of Free-breathing GRASP MRI in Accurate Phase Matching with 4D-CT for Motion Representation in Liver Cancer Radiotherapy

Objective: To determine whether free-breathing golden-angle radial sparse parallel (GRASP) magnetic resonance imaging (MRI) can represent respiratory-induced organ motion in patients with liver malignancies undergoing stereotactic body radiation therapy (SBRT). Methods: A retrospective analysis of 54 patients undergoing liver SBRT was conducted. Four-dimensional computed tomography (4D-CT), the gold standard for motion assessment, was used to characterize liver tumor motion. Image fusion was performed between free-breathing GRASP MRI and each respiratory phase of 4D-CT using an in-house registration program, with fusion quality quantified by maximum cross-correlation coefficient (MCC). Validation involved two blinded radiation oncologists: one repeated image fusion using the Eclipse-built-in module, while the other evaluated clinical relevance on a five-point scale. Results: The 50% respiratory phase of 4D-CT achieved the highest fusion quality with GRASP MRI, showing no significant differences compared to the 30% (P = 0.106), 40% (P = 0.632), and 60% (P = 0.792) phases. In contrast, fusion quality declined significantly beyond the mid-respiratory window (30%-60%), with poor fusion at the 0%, 10%, 20%, 80%, and 90% phases (P < 0.001). Validation by radiation oncologists corroborated these findings, with the 50% phase achieving the highest score. Subjective scores remained above 4 for phases 30%-70%, while scores for the remaining phases fell below 4. Conclusion: Free-breathing GRASP MRI cannot independently represent organ motion across all respiratory phases; it accurately characterizes motion only within the mid-respiratory phases (30%-60%), with optimal performance at the 50% phase. When used as a delineation standard in liver SBRT, GRASP MRI should be combined with 4D-CT or dynamic imaging modalities to ensure comprehensive motion assessment and accurate target volume definition.

physics.med-ph

Reinforcement learning with timed constraints for robotics motion planning

Robotic systems operating in dynamic and uncertain environments increasingly require planners that satisfy complex task sequences while adhering to strict temporal constraints. Metric Interval Temporal Logic (MITL) offers a formal and expressive framework for specifying such time-bounded requirements; however, integrating MITL with reinforcement learning (RL) remains challenging due to stochastic dynamics and partial observability. This paper presents a unified automata-based RL framework for synthesizing policies in both Markov Decision Processes (MDPs) and Partially Observable Markov Decision Processes (POMDPs) under MITL specifications. MITL formulas are translated into Timed Limit-Deterministic Generalized B\"uchi Automata (Timed-LDGBA) and synchronized with the underlying decision process to construct product timed models suitable for Q-learning. A simple yet expressive reward structure enforces temporal correctness while allowing additional performance objectives. The approach is validated in three simulation studies: a $5 \times 5$ grid-world formulated as an MDP, a $10 \times 10$ grid-world formulated as a POMDP, and an office-like service-robot scenario. Results demonstrate that the proposed framework consistently learns policies that satisfy strict time-bounded requirements under stochastic transitions, scales to larger state spaces, and remains effective in partially observable environments, highlighting its potential for reliable robotic planning in time-critical and uncertain settings.

cs.RO

Beyond Model Jailbreak: Systematic Dissection of the "Ten DeadlySins" in Embodied Intelligence

Embodied AI systems integrate language models with real world sensing, mobility, and cloud connected mobile apps. Yet while model jailbreaks have drawn significant attention, the broader system stack of embodied intelligence remains largely unexplored. In this work, we conduct the first holistic security analysis of the Unitree Go2 platform and uncover ten cross layer vulnerabilities the "Ten Sins of Embodied AI Security." Using BLE sniffing, traffic interception, APK reverse engineering, cloud API testing, and hardware probing, we identify systemic weaknesses across three architectural layers: wireless provisioning, core modules, and external interfaces. These include hard coded keys, predictable handshake tokens, WiFi credential leakage, missing TLS validation, static SSH password, multilingual safety bypass behavior, insecure local relay channels, weak binding logic, and unrestricted firmware access. Together, they allow adversaries to hijack devices, inject arbitrary commands, extract sensitive information, or gain full physical control.Our findings show that securing embodied AI requires far more than aligning the model itself. We conclude with system level lessons learned and recommendations for building embodied platforms that remain robust across their entire software hardware ecosystem.

cs.CR

Learning-based agricultural management in partially observable environments subject to climate variability

Agricultural management, with a particular focus on fertilization strategies, holds a central role in shaping crop yield, economic profitability, and environmental sustainability. While conventional guidelines offer valuable insights, their efficacy diminishes when confronted with extreme weather conditions, such as heatwaves and droughts. In this study, we introduce an innovative framework that integrates Deep Reinforcement Learning (DRL) with Recurrent Neural Networks (RNNs). Leveraging the Gym-DSSAT simulator, we train an intelligent agent to master optimal nitrogen fertilization management. Through a series of simulation experiments conducted on corn crops in Iowa, we compare Partially Observable Markov Decision Process (POMDP) models with Markov Decision Process (MDP) models. Our research underscores the advantages of utilizing sequential observations in developing more efficient nitrogen input policies. Additionally, we explore the impact of climate variability, particularly during extreme weather events, on agricultural outcomes and management. Our findings demonstrate the adaptability of fertilization policies to varying climate conditions. Notably, a fixed policy exhibits resilience in the face of minor climate fluctuations, leading to commendable corn yields, cost-effectiveness, and environmental conservation. However, our study illuminates the need for agent retraining to acquire new optimal policies under extreme weather events. This research charts a promising course toward adaptable fertilization strategies that can seamlessly align with dynamic climate scenarios, ultimately contributing to the optimization of crop management practices.

cs.LG

Model-free Motion Planning of Autonomous Agents for Complex Tasks in Partially Observable Environments

Motion planning of autonomous agents in partially known environments with incomplete information is a challenging problem, particularly for complex tasks. This paper proposes a model-free reinforcement learning approach to address this problem. We formulate motion planning as a probabilistic-labeled partially observable Markov decision process (PL-POMDP) problem and use linear temporal logic (LTL) to express the complex task. The LTL formula is then converted to a limit-deterministic generalized Büchi automaton (LDGBA). The problem is redefined as finding an optimal policy on the product of PL-POMDP with LDGBA based on model-checking techniques to satisfy the complex task. We implement deep Q learning with long short-term memory (LSTM) to process the observation history and task recognition. Our contributions include the proposed method, the utilization of LTL and LDGBA, and the LSTM-enhanced deep Q learning. We demonstrate the applicability of the proposed method by conducting simulations in various environments, including grid worlds, a virtual office, and a multi-agent warehouse. The simulation results demonstrate that our proposed method effectively addresses environment, action, and observation uncertainties. This indicates its potential for real-world applications, including the control of unmanned aerial vehicles (UAVs).

cs.AI

Intelligent Traffic Light via Policy-based Deep Reinforcement Learning

Intelligent traffic lights in smart cities can optimally reduce traffic congestion. In this study, we employ reinforcement learning to train the control agent of a traffic light on a simulator of urban mobility. As a difference from existing works, a policy-based deep reinforcement learning method, Proximal Policy Optimization (PPO), is utilized other than value-based methods such as Deep Q Network (DQN) and Double DQN (DDQN). At first, the obtained optimal policy from PPO is compared to those from DQN and DDQN. It is found that the policy from PPO performs better than the others. Next, instead of the fixed-interval traffic light phases, we adopt the light phases with variable time intervals, which result in a better policy to pass the traffic flow. Then, the effects of environment and action disturbances are studied to demonstrate the learning-based controller is robust. At last, we consider unbalanced traffic flows and find that an intelligent traffic light can perform moderately well for the unbalanced traffic scenarios, although it learns the optimal policy from the balanced traffic scenarios only.

cs.LG