arXiv subjects

Junde Li

Publications and source records attributed to Junde Li.

14 recordsLinked to original sources

arXiv2026

ELUCID-DESI II. Revealing dark matter mass, tidal, and velocity (MTV) fields using galaxy group phase information

We introduce a novel method for reconstructing the cosmic mass, tidal, and velocity (MTV) fields over the redshift range $0 < z < 0.6$ using the phase information of galaxy groups. This approach replaces the explicit theoretical bias correction typically needed to relate galaxy groups to the underlying dark matter density field with a simulation-calibrated statistical mapping, reducing a major source of systematic uncertainty and making the method directly applicable to spectroscopic redshift surveys such as the DESI Bright Galaxy Survey (BGS). We evaluate the performance of our MTV reconstruction pipeline with mock redshift surveys that include a comprehensive set of observational selection effects. The galaxy groups used as tracers are identified with an extended halo-based group finder applied to the DESI mock galaxy catalogue with an apparent magnitude limit of $m_z < 19.65$, yielding a galaxy number comparable to that of the DESI BGS faint sample ($m_r < 20.175$). Our tests show that the reconstructed velocities are accurate and unbiased, with a residual dispersion of $\sim 120\ \mathrm{km\,s^{-1}}$ across the redshift bins. The recovered velocity field allows us to shift galaxy groups to their real-space positions, thereby correcting for the Kaiser effect. By iteratively applying this Kaiser correction to the galaxy groups, we further reconstruct the tidal field and the mass-density distribution. The reconstruction is stable with respect to the grid resolution. Overall, our results demonstrate that this group-based phase-space reconstruction provides a robust pathway to recovering the dark matter MTV fields, with strong prospects for application to DESI BGS data.

astro-ph.CO↗

arXiv2026

What can galaxy clustering really tell us about the galaxy-halo connections?

Subhalo abundance matching (SHAM) is a commonly used framework for modeling the galaxy-halo connection. Yet, its standard implementation has difficulty reproducing the observed galaxy clustering with high accuracy (e.g., $\chi^2/\mathrm{dof} \approx 1$). To overcome this issue, we propose a novel CS-SHAM framework, in which central and satellite galaxies are independently matched to main and satellite subhalos in simulations. Within this scheme, we introduce three free parameters to explicitly characterize the satellite fraction, $f_{\mathrm{sat}}$, as a function of stellar mass or absolute magnitude. To evaluate the performance of CS-SHAM, we apply it to two sets of mock galaxy catalogs built with the conventional SHAM method but using different subhalo mass proxies, $M_{\mathrm{peak}}$ and $V_{\mathrm{peak}}$, as well as two additional galaxy samples generated from a SAM and from TNG-300. We demonstrate that CS-SHAM reliably reproduces galaxy clustering whether $M_{\mathrm{peak}}$ or $V_{\mathrm{peak}}$ is used as the subhalo mass proxy. We also find that the models are unable to place robust constraints on $f_{\mathrm{sat}}$ if different mass proxies are employed. Indeed, within the CS-SHAM framework the halo occupation distribution (HOD) and conditional luminosity or stellar mass function (CLF/CSMF) are accurately recovered. Furthermore, we demonstrate for the first time that galaxy clustering constrains the HOD and CLF/CSMF primarily for relatively massive halos. Because the halo bias is nearly constant for low-mass halos, galaxy clustering is generally not very sensitive to the satellite population residing in these low-mass systems.

astro-ph.GA↗

arXiv2026

ELUCID-DESI I: A Parallel MPI Implementation of the Initial Condition Solver for Large-Scale Reconstruction Simulations

We present a highly scalable, MPI-parallelized framework for reconstructing the initial cosmic density field, designed to meet the computational demands of next-generation cosmological simulations, particularly the upcoming ELUCID-DESI simulation based on DESI BGS data. Building upon the Hamiltonian Monte Carlo approach and the FastPM solver, our code employs domain decomposition to efficiently distribute memory between nodes. Although communication overhead increases the per-step runtime of the MPI version by roughly a factor of eight relative to the shared-memory implementation, our scaling tests-spanning different particle numbers, core counts, and node layouts-show nearly linear scaling with respect to both the number of particles and the number of CPU cores. Furthermore, to significantly reduce computational costs during the initial burn-in phase, we introduce a novel ``guess'' module that rapidly generates a high-quality initial density field. The results of the simulation test confirm substantial efficiency gains: for $256^3$ particles, 53 steps ($\sim$ 54 core hours) are saved, accelerating convergence by a factor of $\sim$ 18; for $1024^3$, 106 steps ($\sim$7500 core hours), achieving a speedup factor of $\sim$ 3. The total core hour gain grows with the number of particles, rendering large-volume reconstructions computationally practical for upcoming surveys, including our planned ELUCID-DESI reconstruction simulation with $4096^3$ particles. We estimate that achieving convergence for this scale (targeting DESI-BGS data) requires about 800 HMCMC steps ($\sim$ 5 million core hours). Our initial guess module will save approximately 360 steps ($\sim$2.3 million core hours), reducing the total computational time by about 45\%.

astro-ph.GA↗

arXiv2025

Gamma Analytical Modeling Evolution (GAME) I: The physical implications of deriving the stellar mass functions from z=0 to z=8

The $\Gamma$ growth model is an effective parameterization employed across various scientific disciplines and scales to depict growth. It has been demonstrated that the cosmic star formation rate density (CSFRD) can also be described broadly by this pattern, i.e. $\frac{dM(T)}{dT} = M_{z,0}\, \times \frac{\beta^{\alpha}}{\Gamma(\alpha)} \, T^{\alpha-1} e^{-\beta \, T }$ M$_{\odot}$ Gyr$^{-1}$, where $M_{z,0}$ is the stellar mass at $z$ = 0, $\alpha = 3.0$, $\beta = 0.5 $ Gyr$^{-1}$ and $T$ describes time. We use the identical $\Gamma$ growth pattern given by the CSFRD to extend the present day (z = 0) stellar mass bins $M_{\ast}(T)$ of the Galaxy Stellar Mass Function (GSMF) and investigate if we are able to reproduce observations for the high redshift GSMFs. Surprisingly, our scheme describes successfully the evolution of the GSMF over 13.5 Gyrs, especially for objects with intermediate and low masses. We observe some deviations that manifest {\it solely} at very high redshifts ($z > 1.5$, i.e. more than 9.5 Gyr ago) and {\it specifically} for very small and exceedingly massive objects. We discuss the possible solutions (e.g. impacts of mergers) for these offsets. Our formalism suggests that the evolution of the GSMF is set by simple (few parameters) and physically motivated arguments. The parameters $\beta$ and $\alpha$ are theoretically consistent within a multi-scale context and are determined from the dynamical time scale ($\beta$) and the radial distribution of the accreting matter ($\alpha$). We demonstrate that both our formalism and state-of-the-art simulations are consistent with recent GSMFs derived from JWST data at high redshifts.

astro-ph.GA↗

arXiv2025

Dataset Distillation for Quantum Neural Networks

Training Quantum Neural Networks (QNNs) on large amount of classical data can be both time consuming as well as expensive. Higher amount of training data would require higher number of gradient descent steps to reach convergence. This, in turn would imply that the QNN will require higher number of quantum executions, thereby driving up its overall execution cost. In this work, we propose performing the dataset distillation process for QNNs, where we use a novel quantum variant of classical LeNet model containing residual connection and trainable Hermitian observable in the Parametric Quantum Circuit (PQC) of the QNN. This approach yields highly informative yet small number of training data at similar performance as the original data. We perform distillation for MNIST and Cifar-10 datasets, and on comparison with classical models observe that both the datasets yield reasonably similar post-inferencing accuracy on quantum LeNet (91.9% MNIST, 50.3% Cifar-10) compared to classical LeNet (94% MNIST, 54% Cifar-10). We also introduce a non-trainable Hermitian for ensuring stability in the distillation process and note marginal reduction of up to 1.8% (1.3%) for MNIST (Cifar-10) dataset.

cs.LG↗

arXiv2023

Random Relabeling for Efficient Machine Unlearning

Learning algorithms and data are the driving forces for machine learning to bring about tremendous transformation of industrial intelligence. However, individuals' right to retract their personal data and relevant data privacy regulations pose great challenges to machine learning: how to design an efficient mechanism to support certified data removals. Removal of previously seen data known as machine unlearning is challenging as these data points were implicitly memorized in training process of learning algorithms. Retraining remaining data from scratch straightforwardly serves such deletion requests, however, this naive method is not often computationally feasible. We propose the unlearning scheme random relabeling, which is applicable to generic supervised learning algorithms, to efficiently deal with sequential data removal requests in the online setting. A less constraining removal certification method based on probability distribution similarity with naive unlearning is further developed for logit-based classifiers.

cs.LG↗

arXiv2022

Energy-based Generative Models for Target-specific Drug Discovery

Drug targets are the main focus of drug discovery due to their key role in disease pathogenesis. Computational approaches are widely applied to drug development because of the increasing availability of biological molecular datasets. Popular generative approaches can create new drug molecules by learning the given molecule distributions. However, these approaches are mostly not for target-specific drug discovery. We developed an energy-based probabilistic model for computational target-specific drug discovery. Results show that our proposed TagMol can generate molecules with similar binding affinity scores as real molecules. GAT-based models showed faster and better learning relative to GCN baseline models.

cs.LG↗

arXiv2022

Approximate Quantum Random Access Memory Architectures

Quantum supremacy in many applications using well-known quantum algorithms rely on availability of data in quantum format. Quantum Random Access Memory (QRAM), an equivalent of classical Random Access Memory (RAM), fulfills this requirement. However, the existing QRAM proposals either require qutrit technology and/or incur access challenges. We propose an approximate Parametric Quantum Circuit (PQC) based QRAM which takes address lines as input and gives out the corresponding data in these address lines as the output. We present two applications of the proposed PQC-based QRAM namely, storage of binary data and storage of machine learning (ML) dataset for classification.

quant-ph↗

arXiv2022

Analysis of Power-Oriented Fault Injection Attacks on Spiking Neural Networks

Spiking Neural Networks (SNN) are quickly gaining traction as a viable alternative to Deep Neural Networks (DNN). In comparison to DNNs, SNNs are more computationally powerful and provide superior energy efficiency. SNNs, while exciting at first appearance, contain security-sensitive assets (e.g., neuron threshold voltage) and vulnerabilities (e.g., sensitivity of classification accuracy to neuron threshold voltage change) that adversaries can exploit. We investigate global fault injection attacks by employing external power supplies and laser-induced local power glitches to corrupt crucial training parameters such as spike amplitude and neuron's membrane threshold potential on SNNs developed using common analog neurons. We also evaluate the impact of power-based attacks on individual SNN layers for 0% (i.e., no attack) to 100% (i.e., whole layer under attack). We investigate the impact of the attacks on digit classification tasks and find that in the worst-case scenario, classification accuracy is reduced by 85.65%. We also propose defenses e.g., a robust current driver design that is immune to power-oriented attacks, improved circuit sizing of neuron components to reduce/recover the adversarial accuracy degradation at the cost of negligible area and 25% power overhead. We also present a dummy neuron-based voltage fault injection detection system with 1% power and area overhead.

cs.AI↗

arXiv2021

Scalable Variational Quantum Circuits for Autoencoder-based Drug Discovery

The de novo design of drug molecules is recognized as a time-consuming and costly process, and computational approaches have been applied in each stage of the drug discovery pipeline. Variational autoencoder is one of the computer-aided design methods which explores the chemical space based on existing molecular dataset. Quantum machine learning has emerged as an atypical learning method that may speed up some classical learning tasks because of its strong expressive power. However, near-term quantum computers suffer from limited number of qubits which hinders the representation learning in high dimensional spaces. We present a scalable quantum generative autoencoder (SQ-VAE) for simultaneously reconstructing and sampling drug molecules, and a corresponding vanilla variant (SQ-AE) for better reconstruction. The architectural strategies in hybrid quantum classical networks such as, adjustable quantum layer depth, heterogeneous learning rates, and patched quantum circuits are proposed to learn high dimensional dataset such as, ligand-targeted drugs. Extensive experimental results are reported for different dimensions including 8x8 and 32x32 after choosing suitable architectural strategies. The performance of quantum generative autoencoder is compared with the corresponding classical counterpart throughout all experiments. The results show that quantum computing advantages can be achieved for normalized low-dimension molecules, and that high-dimension molecules generated from quantum generative autoencoders have better drug properties within the same learning period.

quant-ph↗

arXiv2021

Drug Discovery Approaches using Quantum Machine Learning

Traditional drug discovery pipeline takes several years and cost billions of dollars. Deep generative and predictive models are widely adopted to assist in drug development. Classical machines cannot efficiently produce atypical patterns of quantum computers which might improve the training quality of learning tasks. We propose a suite of quantum machine learning techniques e.g., generative adversarial network (GAN), convolutional neural network (CNN) and variational auto-encoder (VAE) to generate small drug molecules, classify binding pockets in proteins, and generate large drug molecules, respectively.

cs.ET↗

arXiv2021

Large-scale Quantum Approximate Optimization via Divide-and-Conquer

Quantum Approximate Optimization Algorithm (QAOA) is a promising hybrid quantum-classical algorithm for solving combinatorial optimization problems. However, it cannot overcome qubit limitation for large-scale problems. Furthermore, the execution time of QAOA scales exponentially with the problem size. We propose a Divide-and-Conquer QAOA (DC-QAOA) to address the above challenges for graph maximum cut (MaxCut) problem. The algorithm works by recursively partitioning a larger graph into smaller ones whose MaxCut solutions are obtained with small-size NISQ computers. The overall solution is retrieved from the sub-solutions by applying the combination policy of quantum state reconstruction. Multiple partitioning and reconstruction methods are proposed/ compared. DC-QAOA achieves 97.14% approximation ratio (20.32% higher than classical counterpart), and 94.79% expectation value (15.80% higher than quantum annealing). DC-QAOA also reduces the time complexity of conventional QAOA from exponential to quadratic.

cs.ET↗

arXiv2021

Quantum Generative Models for Small Molecule Drug Discovery

Existing drug discovery pipelines take 5-10 years and cost billions of dollars. Computational approaches aim to sample from regions of the whole molecular and solid-state compounds called chemical space which could be on the order of 1060 . Deep generative models can model the underlying probability distribution of both the physical structures and property of drugs and relate them nonlinearly. By exploiting patterns in massive datasets, these models can distill salient features that characterize the molecules. Generative Adversarial Networks (GANs) discover drug candidates by generating molecular structures that obey chemical and physical properties and show affinity towards binding with the receptor for a target disease. However, classical GANs cannot explore certain regions of the chemical space and suffer from curse-of-dimensionality. A full quantum GAN may require more than 90 qubits even to generate QM9-like small molecules. We propose a qubit-efficient quantum GAN with a hybrid generator (QGAN-HG) to learn richer representation of molecules via searching exponentially large chemical space with few qubits more efficiently than classical GAN. The QGANHG model is composed of a hybrid quantum generator that supports various number of qubits and quantum circuit layers, and, a classical discriminator. QGAN-HG with only 14.93% retained parameters can learn molecular distribution as efficiently as classical counterpart. The QGAN-HG variation with patched circuits considerably accelerates our standard QGANHG training process and avoids potential gradient vanishing issue of deep neural networks. Code is available on GitHub https://github.com/jundeli/quantum-gan.

cs.ET↗

arXiv2020

Quantum-soft QUBO Suppression for Accurate Object Detection

Non-maximum suppression (NMS) has been adopted by default for removing redundant object detections for decades. It eliminates false positives by only keeping the image M with highest detection score and images whose overlap ratio with M is less than a predefined threshold. However, this greedy algorithm may not work well for object detection under occlusion scenario where true positives with lower detection scores are possibly suppressed. In this paper, we first map the task of removing redundant detections into Quadratic Unconstrained Binary Optimization (QUBO) framework that consists of detection score from each bounding box and overlap ratio between pair of bounding boxes. Next, we solve the QUBO problem using the proposed Quantum-soft QUBO Suppression (QSQS) algorithm for fast and accurate detection by exploiting quantum computing advantages. Experiments indicate that QSQS improves mean average precision from 74.20% to 75.11% for PASCAL VOC 2007. It consistently outperforms NMS and soft-NMS for Reasonable subset of benchmark pedestrian detection CityPersons.

cs.CV↗