arXiv subjects

Junhao Liu

Publications and source records attributed to Junhao Liu.

At least 55 records · Page 3Linked to original sources

arXiv2025

The JCMT BISTRO Survey: Unveiling the Magnetic Fields around Galactic Center

We acquired 450 μm and 850 μm dust continuum polarization observations toward the inner region of the Central Molecular Zone (CMZ) as part of the B-Fields In Star-Forming Region Observations (BISTRO) survey using the POL-2 polarimeter on the James Clerk Maxwell Telescope. These observations encompassed three dense structures: the 20 km s{^{-1}} cloud (20MC), 50 km s{^{-1}} cloud (50MC), and circumnuclear disk (CND). Our aim is to investigate the magnetic field morphology and strength in the inner region of the CMZ using polarized dust continuum and the Davis-Chandrasekhar-Fermi method. The magnetic field morphology is highly ordered in all three dense regions. The plane-of-sky magnetic field strengths are {\sim}1 mG for the 20MC and the 50MC, and {\sim}2 mG for the CND. We compare the energy contributions of turbulence, gravity, and thermal motion with that of the magnetic field using the plasma β, mass-to-flux ratio, and Alfvén Mach number. The outcomes reveal the magnetic field stands out as the predominant factor within the inner region of the CMZ. The dominance of the magnetic field may explain the low star-forming rate in the CMZ. We further investigate the dust grain alignment efficiency by exploring the relationship between polarization fraction and total intensity. The results suggest that dust grains are well aligned with the magnetic fields.

astro-ph.GA↗

arXiv2025

ReX: A Framework for Incorporating Temporal Information in Model-Agnostic Local Explanation Techniques

Existing local model-agnostic explanation techniques are ineffective for machine learning models that consider inputs of variable lengths, as they do not consider temporal information embedded in these models. To address this limitation, we propose \textsc{ReX}, a general framework for incorporating temporal information in these techniques. Our key insight is that these techniques typically learn a model surrogate by sampling model inputs and outputs, and we can incorporate temporal information in a uniform way by only changing the sampling process and the surrogate features. We instantiate our approach on three popular explanation techniques: Anchors, LIME, and Kernel SHAP. To evaluate the effectiveness of \textsc{ReX}, we apply our approach to six models in three different tasks. Our evaluation results demonstrate that our approach 1) significantly improves the fidelity of explanations, making model-agnostic techniques outperform a state-of-the-art model-specific technique on its target model, and 2) helps end users better understand the models' behaviors.

cs.LG↗

arXiv2024

A Tale of Three: Magnetic Fields along the Orion Integral-Shaped Filament as Revealed by JCMT BISTRO survey

As part of the BISTRO survey, we present JCMT 850 $μ$m polarimetric observations towards the Orion Integral-Shaped Filament (ISF) that covers three portions known as OMC-1, OMC-2, and OMC-3. The magnetic field threading the ISF seen in the JCMT POL-2 map appears as a tale of three: pinched for OMC-1, twisted for OMC-2, and nearly uniform for OMC-3. A multi-scale analysis shows that the magnetic field structure in OMC-3 is very consistent at all the scales, whereas the field structure in OMC-2 shows no correlation across different scales. In OMC-1, the field retains its mean orientation from large to small scales, but shows some deviations at small scales. Histograms of relative orientations between the magnetic field and filaments reveal a bimodal distribution for OMC-1, a relatively random distribution for OMC-2, and a distribution with a predominant peak at 90$^\circ$ for OMC-3. Furthermore, the magnetic fields in OMC-1 and OMC-3 both appear to be aligned perpendicular to the fibers, which are denser structures within the filament, but the field in OMC-2 is aligned along with the fibers. All these suggest that gravity, turbulence, and magnetic field are each playing a leading role in OMC-1, 2, and 3, respectively. While OMC-2 and 3 have almost the same gas mass, density, and non-thermal velocity dispersion, there are on average younger and fewer young stellar objects in OMC-3, providing evidence that a stronger magnetic field will induce slower and less efficient star formation in molecular clouds.

astro-ph.GA↗

arXiv2024

Magnetic Fields in Massive Star-forming Regions (MagMaR). V. The Magnetic Field at the Onset of High-mass Star Formation

A complete understanding of the initial conditions of high-mass star formation and what processes determine multiplicity require the study of the magnetic field (B-field) in young, massive cores. Using ALMA 250 GHz polarization (0.3" = 1000 au) and ALMA 220 GHz high-angular resolution observations (0.05" = 160 au), we have performed a full energy analysis including the B-field at core scales and have assessed what influences the multiplicity inside a massive core previously believed to be in the prestellar phase. With 31 Msun, the G11.92 MM2 core has a young CS outflow with a dynamical time scale of a few thousand years. At high-resolution, the MM2 core fragments into a binary system with a projected separation of 505 au and a binary mass ratio of 1.14. Using the DCF method with an ADF analysis, we estimate in this core a B-field strength of 6.2 mG and a mass-to-flux ratio of 18. The MM2 core is strongly subvirialized with a virial parameter of 0.064, including the B-field. The high mass-to-flux ratio and low virial parameter indicate that this massive core is very likely undergoing runaway collapse, which is in direct contradiction with the core-accretion model. The MM2 core is embedded in a filament that has a velocity gradient consistent with infall. In line with clump-fed scenarios, the core can grow in mass at a rate of 1.9--5.6 x 10^-4 Msun/yr. In spite of the B-field having only a minor contribution to the total energy budget at core scales, it likely plays a more important role at smaller scales by setting the binary properties. Considering energy ratios and a fragmentation criterion at the core scale, the binary could have been formed by core fragmentation. The binary properties (separation and mass ratio), however, are also consistent with radiation-magnetohydrodynamic simulations with super-Alfvenic, supersonic (or sonic) turbulence that form binaries by disk fragmentation.

astro-ph.GA↗

arXiv2024

Single-Cell Omics Arena: A Benchmark Study for Large Language Models on Cell Type Annotation Using Single-Cell Data

Over the past decade, the revolution in single-cell sequencing has enabled the simultaneous molecular profiling of various modalities across thousands of individual cells, allowing scientists to investigate the diverse functions of complex tissues and uncover underlying disease mechanisms. Among all the analytical steps, assigning individual cells to specific types is fundamental for understanding cellular heterogeneity. However, this process is usually labor-intensive and requires extensive expert knowledge. Recent advances in large language models (LLMs) have demonstrated their ability to efficiently process and synthesize vast corpora of text to automatically extract essential biological knowledge, such as marker genes, potentially promoting more efficient and automated cell type annotations. To thoroughly evaluate the capability of modern instruction-tuned LLMs in automating the cell type identification process, we introduce SOAR, a comprehensive benchmarking study of LLMs for cell type annotation tasks in single-cell genomics. Specifically, we assess the performance of 8 instruction-tuned LLMs across 11 datasets, spanning multiple cell types and species. Our study explores the potential of LLMs to accurately classify and annotate cell types in single-cell RNA sequencing (scRNA-seq) data, while extending their application to multiomics data through cross-modality translation. Additionally, we evaluate the effectiveness of chain-of-thought (CoT) prompting techniques in generating detailed biological insights during the annotation process. The results demonstrate that LLMs can provide robust interpretations of single-cell data without requiring additional fine-tuning, advancing the automation of cell type annotation in genomics research.

cs.CL↗

arXiv2024

The magnetic field in quiescent star-forming filament G16.96+0.27

We present 850 μm thermal dust polarization observations with a resolution of 14.4"(~ 0.13 pc) towards an infrared dark cloud G16.96+0.27 using JCMT/POL-2. The average magnetic field orientation, which roughly agrees with the larger-scale magnetic field orientation traced by the Planck 353 GHz data, is approximately perpendicular to the filament structure. The estimated plane-of-sky magnetic field strength is ~ 96 μG and ~ 60 μG using two variants of the Davis-Chandrasekhar-Fermi methods. We calculate the virial and magnetic critical parameters to evaluate the relative importance of gravity, the magnetic field, and turbulence. The magnetic field and turbulence are both weaker than gravity, but magnetic fields and turbulence together are equal to gravity, suggesting that G16.96+0.27 is in a quasi-equilibrium state. The cloud-magnetic-field alignment is found to have a trend moving away from perpendicularity in the dense regions, which may serve as a tracer of potential fragmentation in such quiescent filaments.

astro-ph.GA↗

arXiv2024

The JCMT BISTRO Survey: The Magnetic Fields of the IC 348 Star-forming Region

We present 850 $μ$m polarization observations of the IC 348 star-forming region in the Perseus molecular cloud as part of the B-fields In STar-forming Region Observation (BISTRO) survey. We study the magnetic properties of two cores (HH 211 MMS and IC 348 MMS) and a filamentary structure of IC 348. We find that the overall field tends to be more perpendicular than parallel to the filamentary structure of the region. The polarization fraction decreases with intensity, and we estimate the trend by power-law and the mean of the Rice distribution fittings. The power indices for the cores are much smaller than 1, indicative of possible grain growth to micron size in the cores. We also measure the magnetic field strengths of the two cores and the filamentary area separately by applying the Davis-Chandrasekhar-Fermi method and its alternative version for compressed medium. The estimated mass-to-flux ratios are 0.45-2.20 and 0.63-2.76 for HH 211 MMS and IC 348 MMS, respectively, while the ratios for the filament is 0.33-1.50. This result may suggest that the transition from subcritical to supercritical conditions occurs at the core scale ($\sim$ 0.05 pc) in the region. In addition, we study the energy balance of the cores and find that the relative strength of turbulence to the magnetic field tends to be stronger for IC 348 MMS than HH 211 MMS. The result could potentially explain the different configurations inside the two cores: a single protostellar system in HH 211 MMS and multiple protostars in IC 348 MMS.

astro-ph.GA↗

arXiv2024

Magnetic Fields in Massive Star-forming Regions (MagMaR): Unveiling an Hourglass Magnetic Field in G333.46-0.16 using ALMA

The contribution of the magnetic field to the formation of high-mass stars is poorly understood. We report the high-angular resolution ($\sim0.3^{\prime\prime}$, 870 au) map of the magnetic field projected on the plane of the sky (B$_\mathrm{POS}$) towards the high-mass star forming region G333.46$-$0.16 (G333), obtained with the Atacama Large Millimeter/submillimeter Array (ALMA) at 1.2 mm as part of the Magnetic Fields in Massive Star-forming Regions (MagMaR) survey. The B$_\mathrm{POS}$ morphology found in this region is consistent with a canonical ``hourglass'' which suggest a dynamically important field. This region is fragmented into two protostars separated by $\sim1740$ au. Interestingly, by analysing H$^{13}$CO$^{+}$ ($J=3-2$) line emission, we find no velocity gradient over the extend of the continuum which is consistent with a strong field. We model the B$_\mathrm{POS}$, obtaining a marginally supercritical mass-to-flux ratio of 1.43, suggesting an initially strongly magnetized environment. Based on the Davis-Chandrasekhar-Fermi method, the magnetic field strength towards G333 is estimated to be 5.7 mG. The absence of strong rotation and outflows towards the central region of G333 suggests strong magnetic braking, consistent with a highly magnetized environment. Our study shows that despite being a strong regulator, the magnetic energy fails to prevent the process of fragmentation, as revealed by the formation of the two protostars in the central region.

astro-ph.GA↗

arXiv2024

Negligible Normal Fluid in Superconducting State of Heavily Overdoped Bi$_2$Sr$_2$CaCu$_2$O$_{8+δ}$ Detected by Ultra-Low Temperature Angle-Resolved Photoemission Spectroscopy

In high temperature cuprate superconductors, it was found that in the overdoped region the superfluid density decreases with the increase of hole doping. One natural question is whether there exists normal fluid in the superconducting state in the overdoped region. In this paper, we have carried out high-resolution ultra-low temperature laser-based angle-resolved photoemission measurements on a heavily overdoped Bi2212 sample with a $T_{\mathrm{c}}$ of 48 K. We find that this heavily overdoped Bi2212 remains in the strong coupling regime with $2 \mathitΔ_0 / k_{\mathrm{B}} T_{\mathrm{c}}=5.8$. The single-particle scattering rate is very small along the nodal direction ($\sim$5 meV) and increases as the momentum moves from the nodal to the antinodal regions. A hard superconducting gap opening is observed near the antinodal region with the spectral weight at the Fermi level fully suppressed to zero. The normal fluid is found to be negligibly small in the superconducting state of this heavily overdoped Bi2212. These results provide key information to understand the high $T_\mathrm{c}$ mechanism in the cuprate superconductors.

cond-mat.supr-con↗

arXiv2024

Hierarchical Context Pruning: Optimizing Real-World Code Completion with Repository-Level Pretrained Code LLMs

Some recently developed code large language models (Code LLMs) have been pre-trained on repository-level code data (Repo-Code LLMs), enabling these models to recognize repository structures and utilize cross-file information for code completion. However, in real-world development scenarios, simply concatenating the entire code repository often exceeds the context window limits of these Repo-Code LLMs, leading to significant performance degradation. In this study, we conducted extensive preliminary experiments and analyses on six Repo-Code LLMs. The results indicate that maintaining the topological dependencies of files and increasing the code file content in the completion prompts can improve completion accuracy; pruning the specific implementations of functions in all dependent files does not significantly reduce the accuracy of completions. Based on these findings, we proposed a strategy named Hierarchical Context Pruning (HCP) to construct completion prompts with high informational code content. The HCP models the code repository at the function level, maintaining the topological dependencies between code files while removing a large amount of irrelevant code content, significantly reduces the input length for repository-level code completion. We applied the HCP strategy in experiments with six Repo-Code LLMs, and the results demonstrate that our proposed method can significantly enhance completion accuracy while substantially reducing the length of input. Our code and data are available at https://github.com/Hambaobao/HCP-Coder.

cs.CL↗

arXiv2024

Marathon: A Race Through the Realm of Long Context with Large Language Models

With the advancement of large language models (LLMs) and the expansion of their context windows, existing long-context benchmarks fall short in effectively evaluating the models' comprehension and reasoning abilities in extended texts. Moreover, conventional benchmarks relying on F1 metrics often inaccurately score responses: they may undervalue correct answers that differ from the reference responses and overvalue incorrect ones that resemble the reference texts. In response to these limitations, we introduce Marathon, a novel evaluation benchmark that adopts a multiple-choice question format. It is specifically designed to overcome the constraints of previous benchmarks and provide a rapid, precise, and unbiased appraisal of the long-context comprehension skills of large language models. We conducted comprehensive evaluations on the Marathon benchmark with a range of state-of-the-art LLMs and assessed the effectiveness of various optimization strategies tailored for long-context generation. We anticipate that the Marathon benchmark and its associated leaderboard will enable a more precise and equitable evaluation of LLMs' capabilities in understanding and reasoning over extended contexts. Marathon is available at https://github.com/Hambaobao/Marathon.

cs.CL↗

arXiv2024

MagMar III -- Resisting the Pressure, Is the Magnetic Field Overwhelmed in NGC6334I?

We report on ALMA observations of polarized dust emission at 1.2 mm from NGC6334I, a source known for its significant flux outbursts. Between five months, our data show no substantial change in total intensity and a modest 8\% variation in linear polarization, suggesting a phase of stability or the conclusion of the outburst. The magnetic field, inferred from this polarized emission, displays a predominantly radial pattern from North-West to South-East with intricate disturbances across major cores, hinting at spiral structures. Energy analysis of CS$(J=5 \rightarrow 4)$ emission yields an outflow energy of approximately $3.5\times10^{45}$ ergs, aligning with previous interferometric studies. Utilizing the Davis-Chandrasekhar-Fermi method, we determined magnetic field strengths ranging from 1 to 11 mG, averaging at 1.9 mG. This average increases to 4 $\pm 1$ mG when incorporating Zeeman measurements. Comparative analyses using gravitational, thermal, and kinetic energy maps reveal that magnetic energy is significantly weaker, possibly explaining the observed field morphology. We also find that the energy in the outflows and the expanding cometary {\HII} region is also larger than the magnetic energy, suggesting that protostellar feedback maybe the dominant driver behind the injection of turbulence in NGC6334I at the scales sampled by our data. The gas in NGC6334I predominantly exhibits supersonic and trans-Alfvenic conditions, transitioning towards a super-Alfvenic regime, underscoring a diminished influence of the magnetic field with increasing gas density. These observations are in agreement with prior polarization studies at 220 GHz, enriching our understanding of the dynamic processes in high-mass star-forming regions.

astro-ph.GA↗

arXiv2024

Magnetic field in mini starburst complex Sgr B2

We report the first arcsecond-resolution observations of the magnetic field in the mini starburst complex Sgr B2. SMA polarization observations revealed magnetic field morphology in three dense cores of Sgr B2 N(orth), M(ain), and S(outh). The total plane-of-sky magnetic field strengths in these cores are estimated to be 4.3-10.0 mG, 6.2-14.7 mG, and 1.9-4.5 mG derived from the angular dispersion function method after applying the correction factors of 0.21 and 0.5. Combining with analyses of the parsec-scale polarization data from SOFIA, we found that a magnetically supercritical condition is present from the cloud-scale ($\sim$10 pc) to core-scale ($\sim$0.2 pc) in Sgr B2, which is consistent with the burst of star formation activities in the region likely resulted from a multi-scale gravitational collapse from the cloud to dense cores.

astro-ph.GA↗

arXiv2024

One-Shot Learning as Instruction Data Prospector for Large Language Models

Contemporary practices in instruction tuning often hinge on enlarging data scaling without a clear strategy for ensuring data quality, inadvertently introducing noise that may compromise model performance. To address this challenge, we introduce \textsc{Nuggets}, a novel and efficient methodology that leverages one-shot learning to discern and select high-quality instruction data from extensive datasets. \textsc{Nuggets} assesses the potential of individual instruction examples to act as effective one-shot learning instances, thereby identifying those that can significantly improve performance across diverse tasks. \textsc{Nuggets} utilizes a scoring system based on the impact of candidate examples on the perplexity of a diverse anchor set, facilitating the selection of the most advantageous data for instruction tuning. Through comprehensive evaluations on two benchmarks, including MT-Bench and Alpaca-Eval, we show that instruction tuning with the top 1\% of examples curated by \textsc{Nuggets} substantially outperforms conventional methods employing the entire dataset.

cs.CL↗

arXiv2024

Dark Dragon Breaks Magnetic Chain: Dynamical Substructures of IRDC G28.34 Form in Supported Environments

We have comprehensively studied the multi-scale physical properties of the infrared dark cloud (IRDC) G28.34 (the Dragon cloud) with dust polarization and molecular line data from Planck, FCRAO-14m, JCMT, and ALMA. We find that the averaged magnetic fields of clumps tend to be either parallel with or perpendicular to the cloud-scale magnetic fields, while the cores in clump MM4 tend to have magnetic fields aligned with the clump fields. Implementing the relative orientation analysis (for magnetic fields, column density gradients, and local gravity), Velocity Gradient Technique (VGT), and modified Davis-Chandrasekhar-Fermi (DCF) analysis, we find that: G28.34 is located in a trans-to-sub-Alfvénic environment ($\mathcal{M}_{A}=0.74$ within $r=15$ pc); the magnetic field is effectively resisting gravitational collapse in large-scale diffuse gas, but is distorted by gravity within the cloud and affected by star formation activities in high-density regions; and the normalized mass-to-flux ratio tends to increase with increasing density and decreasing radius. Considering the thermal, turbulent, and magnetic supports, we find that the environmental gas of G28.34 is in a super-virial (supported) state, the infrared dark clumps may be in a near-equilibrium state, and core MM4-core4 is in a sub-virial (gravity-dominant) state. In summary, we suggest that magnetic fields dominate gravity and turbulence in the cloud environment at large scales, resulting in relatively slow cloud formation and evolution processes. Within the cloud, gravity could overwhelm magnetic fields and turbulence, allowing local dynamical star formation to happen.

astro-ph.GA↗

arXiv2024

Surveys of clumps, cores, and condensations in Cygnus X: Temperature and nonthermal velocity dispersion revealed by VLA NH3 observations

The physical properties, evolution, and fragmentation of massive dense cores (MDCs, $\sim$ 0.1 pc) are fundamental pieces in our understanding of high-mass star formation. We aim to characterize the temperature, velocity dispersion, and fragmentation of the MDCs in the Cygnus X giant molecular cloud and to investigate the stability and dynamics of these cores. We present the Karl G. Jansky Very Large Array (VLA) observations of the NH$_3$ (J,K) = (1,1) and (2,2) inversion lines towards 35 MDCs in Cygnus X, from which we calculated the temperature and velocity dispersion. We extracted 202 fragments ($\sim$ 0.02 pc) from the NH$_3$ (1,1) moment-0 maps with the GAUSSCLUMPS algorithm. We analyzed the stability of the MDCs and their NH$_3$ fragments through evaluating the corresponding kinetic, gravitational potential, and magnetic energies and the virial parameters. The MDCs in Cygnus X have a typical mean kinetic temperature T$_K$ of $\sim$ 20 K. Our virial analysis shows that many MDCs are in subvirialized states, indicating that the kinetic energy is insufficient to support these MDCs against their gravity. The calculated nonthermal velocity dispersions of most MDCs are at transonic to mildly supersonic levels, and the bulk motions make only a minor contribution to the velocity dispersion. Regarding the NH$_3$ fragments, with T$_K$ $\sim$ 19 K, their nonthermal velocity dispersions are mostly trans-sonic to subsonic. Unless there is a strong magnetic field, most NH$_3$ fragments are probably not in virialized states. We also find that most of the NH$_3$ fragments are dynamically quiescent, while only a few are active due to star formation activity.

astro-ph.GA↗

arXiv2024

Filamentary Network and Magnetic Field Structures Revealed with BISTRO in the High-Mass Star-Forming Region NGC2264 : Global Properties and Local Magnetogravitational Configurations

We report 850 $μ$m continuum polarization observations toward the filamentary high-mass star-forming region NGC 2264, taken as part of the B-fields In STar forming Regions Observations (BISTRO) large program on the James Clerk Maxwell Telescope (JCMT). These data reveal a well-structured non-uniform magnetic field in the NGC 2264C and 2264D regions with a prevailing orientation around 30 deg from north to east. Field strengths estimates and a virial analysis for the major clumps indicate that NGC 2264C is globally dominated by gravity while in 2264D magnetic, gravitational, and kinetic energies are roughly balanced. We present an analysis scheme that utilizes the locally resolved magnetic field structures, together with the locally measured gravitational vector field and the extracted filamentary network. From this, we infer statistical trends showing that this network consists of two main groups of filaments oriented approximately perpendicular to one another. Additionally, gravity shows one dominating converging direction that is roughly perpendicular to one of the filament orientations, which is suggestive of mass accretion along this direction. Beyond these statistical trends, we identify two types of filaments. The type-I filament is perpendicular to the magnetic field with local gravity transitioning from parallel to perpendicular to the magnetic field from the outside to the filament ridge. The type-II filament is parallel to the magnetic field and local gravity. We interpret these two types of filaments as originating from the competition between radial collapsing, driven by filament self-gravity, and the longitudinal collapsing, driven by the region's global gravity.

astro-ph.SR↗

arXiv2024

The magnetic field in colliding filaments G202.3+2.5

We observe the magnetic field morphology towards a nearby star-forming filamentary cloud, G202.3+2.5, by the JCMT/POL-2 850 μm thermal dust polarization observation with an angular resolution of 14.4" (~0.053 pc). The average magnetic field orientation is found to be perpendicular to the filaments while showing different behaviors in the four subregions, suggesting various effects from filaments' collision in these subregions. With the kinematics obtained by N2H+ observation by IRAM, we estimate the plane-of-sky (POS) magnetic field strength by two methods, the classical Davis-Chandrasekhar-Fermi (DCF) method and the angular dispersion function (ADF) method, B_{pos,dcf} and B_{pos,adf} are ~90 μG and ~53 μG. We study the relative importance between the gravity (G), magnetic field (B) and turbulence (T) in the four subregions, find G > T > B, G >= T > B, G ~ T > B and T > G > B in the north tail, west trunk, south root and east wing, respectively. In addition, we investigate the projection effect on the DCF and ADF methods based on a similar simulation case and find the 3D magnetic field strength may be underestimated by a factor of ~3 if applying the widely-used statistical B_{pos}-to-B_{3D} factor when using DCF or ADF method, which may further underestimate/overestimate related parameters.

astro-ph.GA↗