arXiv subjects

Junhyeok Lee

Publications and source records attributed to Junhyeok Lee.

At least 37 records · Page 2Linked to original sources

arXiv2026

SciZoom: A Large-scale Benchmark for Hierarchical Scientific Summarization across the LLM Era

The explosive growth of AI research has created unprecedented information overload, increasing the demand for scientific summarization at multiple levels of granularity beyond traditional abstracts. While LLMs are increasingly adopted for summarization, existing benchmarks remain limited in scale, target only a single granularity, and predate the LLM era. Moreover, since the release of ChatGPT in November 2022, researchers have rapidly adopted LLMs for drafting manuscripts themselves, fundamentally transforming scientific writing, yet no resource exists to analyze how this writing has evolved. To bridge these gaps, we introduce SciZoom, a benchmark comprising 44,946 papers from four top-tier ML venues (NeurIPS, ICLR, ICML, EMNLP) spanning 2020 to 2025, explicitly stratified into Pre-LLM and Post-LLM eras. SciZoom provides three hierarchical summarization targets (Abstract, Contributions, and TL;DR) achieving compression ratios up to 600:1, enabling both multi-granularity summarization research and temporal mining of scientific writing patterns. Our linguistic analysis reveals striking shifts in phrase patterns (up to 10x for formulaic expressions) and rhetorical style (23% decline in hedging), suggesting that LLM-assisted writing produces more confident yet homogenized prose. SciZoom serves as both a challenging benchmark and a unique resource for mining the evolution of scientific discourse in the generative AI era. Our code and dataset are publicly available on GitHub (https://github.com/janghana/SciZoom) and Hugging Face (https://huggingface.co/datasets/hanjang/SciZoom), respectively.

cs.CL↗

arXiv2026

MMed-Bench-IR: A Heterogeneous Benchmark for Multilingual Medical Information Retrieval

Retrieval-augmented generation (RAG) in clinical settings increasingly requires multilingual retrieval against predominantly English evidence corpora. Multilingual medical retrieval demands three capabilities: cross-lingual alignment, concept discrimination, and evidence retrieval. However, existing benchmarks evaluate these only in isolation, leaving the interaction between biomedical expertise and multilingual coverage unmeasured. We introduce MMed-Bench-IR, a benchmark designed to disentangle these axes across 6 languages and three structurally heterogeneous tasks: (1) cross-lingual medical QA retrieval with 6,127 queries grounded in the Unified Medical Language System (UMLS), (2) concept discrimination over 4,975 confusion sets at three difficulty tiers, and (3) multilingual evidence retrieval for RAG with 2,040 quality-assured queries. The three tasks share zero concept and query overlap by design, ensuring that aggregate scores reflect genuine capability breadth. Evaluation of ten systems across six paradigm families reveals severe cross-lingual failure: biomedical encoders that score 0.818 nDCG@10 in English drop to 0.056 in Japanese, a gap that English-only benchmarks cannot detect.

cs.CL↗

arXiv2026

Hierarchical Perfusion Graphs for Tumor Heterogeneity Modeling in Glioma Molecular Subtyping

Precise molecular subtyping of gliomas, including isocitrate dehydrogenase (IDH) mutation and 1p/19q codeletion, directly guides surgical and therapeutic decisions, yet currently relies on invasive tissue sampling. Deep learning on structural MRI has emerged as a non-invasive alternative, but anatomy-only approaches cannot capture the hemodynamic signatures that distinguish molecular subtypes. Radiogenomics based on dynamic susceptibility contrast (DSC) MRI holds immense potential for non-invasively characterizing glioma molecular subtypes, yet clinical deployment has been hindered by inter-site variability and the limitations of voxel-wise analysis. We introduce HiPerfGNN, a framework that first learns discrete hemodynamic representations from raw time-intensity curves using a vector-quantized variational autoencoder (VQ-VAE). These quantized perfusion codes define coarse-level graph nodes representing functional tumor habitats, each of which is hierarchically subdivided into fine-level subregions guided by structural MRI. A hierarchical graph neural network then propagates information across scales for molecular prediction. On an internal cohort (n=475), the model achieved AUCs of 0.96 (IDH), 0.89 (1p/19q), and 0.84 (WHO grade), and maintained robust IDH performance (AUC 0.89) on an independent external cohort (n=397) without recalibration. Gradient-based saliency analysis confirms biologically grounded attention patterns aligned with known glioma pathophysiology. Our results demonstrate the added value of integrating perfusion dynamics into radiogenomic pipelines for glioma molecular subtyping. Code is available at https://github.com/janghana/HiPerfGNN.

cs.CV↗

arXiv2026

MEDLAYXPLAIN: Benchmarking the Expert-Lay Gap in Medical Vision-Language Models

Medical Vision-Language Models (Med-VLMs) achieve strong expert-level performance, yet their ability to generate patient-accessible descriptions remains underexplored. With the 21st Century Cures Act now mandating immediate patient access to diagnostic imaging results, evaluating whether Med-VLMs can bridge this Expert-Lay Gap is both urgent and clinically consequential for patient education and shared decision-making. To this end, we introduce MedLayXPlain, the first large-scale multimodal benchmark and evaluation framework for Medical Lay Language Generation (MLLG). MedLayXPlain-122K provides 122,789 region-grounded samples across 8 imaging modalities from 12 publicly available source datasets, each comprising a medical image with paired expert and lay captions anchored in a three-level Unified Medical Language System (UMLS) ontology hierarchy spanning 7 semantic groups, 43 semantic types, and 2,411 medical concepts. Lay captions are constructed via Hierarchical Ontology-Verified Refinement (HOVER), a three-step pipeline combining patient-centric vocabulary mapping, LLM-based constrained rewriting, and cross-model visual verification to enforce semantic equivalence while preventing hallucination. We further introduce MedLayEval, a lightweight 3B evaluator distilled from a 27B verifier that scores expert-lay alignment across five clinically grounded attributes, addressing the poor correlation between standard NLG metrics and clinical judgment. Benchmarking 33 VLMs on MedLayXPlain-122K reveals a systematic Expert-Lay Gap: medical VLMs achieve strong expert captioning but suffer significant lay-register degradation, while general-purpose VLMs produce more accessible language yet lack clinical precision, confirming that neither current paradigm adequately serves patient-facing communication.

cs.CV↗

arXiv2026

Motif-Video 2B: Technical Report

Training strong video generation models usually requires massive datasets, large parameter counts, and substantial compute. In this work, we ask whether strong text-to-video quality is possible at a much smaller budget: fewer than 10M clips and less than 100,000 H200 GPU hours. Our core claim is that part of the answer lies in how model capacity is organized, not only in how much of it is used. In video generation, prompt alignment, temporal consistency, and fine-detail recovery can interfere with one another when they are handled through the same pathway. Motif-Video 2B addresses this by separating these roles architecturally, rather than relying on scale alone. The model combines two key ideas. First, Shared Cross-Attention strengthens text control when video token sequences become long. Second, a three-part backbone separates early fusion, joint representation learning, and detail refinement. To make this design effective under a limited compute budget, we pair it with an efficient training recipe based on dynamic token routing and early-phase feature alignment to a frozen pretrained video encoder. Our analysis shows that later blocks develop clearer cross-frame attention structure than standard single-stream baselines. On VBench, Motif-Video~2B reaches 83.76\%, surpassing Wan2.1 14B while using 7$\times$ fewer parameters and substantially less training data. These results suggest that careful architectural specialization, combined with an efficiency-oriented training recipe, can narrow or exceed the quality gap typically associated with much larger video models.

cs.CV↗

arXiv2026

citecheck: An MCP Server for Automated Bibliographic Verification and Repair in Scholarly Manuscripts

Reference lists in scholarly manuscripts frequently contain errors, including incorrect identifiers, incomplete metadata, misattributed authors, and mismatches between preprint and published versions. These problems are tedious to repair manually and have become more visible in workflows that rely on large language models, which can fabricate or corrupt citations. We present citecheck, a TypeScript system and MCP server for automated bibliographic verification and repair in paper-like project folders. Given a manuscript file or workspace, citecheck selects the most likely paper artifact, extracts references from .bib, .tex, .md, .txt, or .docx, validates entries against PubMed, Crossref, arXiv, and Semantic Scholar, and returns structured correction proposals together with replacement-safety diagnostics. The current repository provides a working research prototype with multi-pass retrieval, manifestation-aware matching, policy-gated rewrite planning, and 47 passing tests covering repair behavior, malformed payload handling, transport failures, and MCP exposure. We position citecheck as infrastructure for agentic scholarly editing and as a practical guardrail against both traditional reference errors and LLM-induced citation hallucinations.

cs.DL↗

arXiv2026

Segmentation-before-Staining Improves Structural Fidelity in Virtual IHC-to-Multiplex IF Translation

Multiplex immunofluorescence (mIF) enables simultaneous single-cell quantification of multiple biomarkers within intact tissue architecture, yet its high reagent cost, multi-round staining protocols, and need for specialized imaging platforms limit routine clinical adoption. Virtual staining can synthesize mIF channels from widely available brightfield immunohistochemistry (IHC), but current translators optimize pixel-level fidelity without explicitly constraining nuclear morphology. In pathology, this gap is clinically consequential: subtle distortions in nuclei count, shape, or spatial arrangement propagate directly to quantification endpoints such as the Ki67 proliferation index, where errors of a few percent can shift treatment-relevant risk categories. This work introduces a supervision-free, architecture-agnostic conditioning strategy that injects a continuous cell probability map from a pretrained nuclei segmentation foundation model as an explicit input prior, together with a variance-preserving regularization term that matches local intensity statistics to maintain cell-level heterogeneity in synthesized fluorescence channels. The soft prior retains gradient-level boundary information lost by binary thresholding, providing a richer conditioning signal without task-specific tuning. Controlled experiments across Pix2Pix with U-Net and ResNet generators, deterministic regression U-Net, and conditional diffusion on two independent datasets demonstrate consistent improvements in nuclei count fidelity and perceptual quality, as the sole modifications. Code will be made publicly available upon acceptance.

cs.CV↗

arXiv2026

MaskVCT: Masked Voice Codec Transformer for Zero-Shot Voice Conversion With Increased Controllability via Multiple Guidances

We introduce MaskVCT, a zero-shot voice conversion (VC) model that offers multi-factor controllability through multiple classifier-free guidances (CFGs). While previous VC models rely on a fixed conditioning scheme, MaskVCT integrates diverse conditions in a single model. To further enhance robustness and control, the model can leverage continuous or quantized linguistic features to enhance intelligibility and speaker similarity, and can use or omit pitch contour to control prosody. These choices allow users to seamlessly balance speaker identity, linguistic content, and prosodic factors in a zero-shot VC setting. Extensive experiments demonstrate that MaskVCT achieves the best target speaker and accent similarities while obtaining competitive word and character error rates compared to existing baselines. Audio samples are available at https://maskvct.github.io/.

eess.AS↗

arXiv2026

Super Monotonic Alignment Search

Monotonic alignment search (MAS), introduced by Glow-TTS, is one of the most popular algorithm in text-to-speech to estimate unknown alignments between text and speech. Since this algorithm needs to search for the most probable alignment with dynamic programming by caching all possible paths, the time complexity of the algorithm is $O(T \times S)$, where $T$ is the length of text and $S$ is the length of speech representation. The authors of Glow-TTS run this algorithm on CPU, and while they mentioned it is difficult to parallelize, we found that MAS can be parallelized in text length dimension and CPU execution consumes an inordinate amount of time for inter-device copy. Therefore, we implemented a Triton kernel and PyTorch JIT script to accelerate MAS on GPU without inter-device copy. As a result, Super-MAS Triton kernel is up to 72 times faster in the extreme-length case. The code is available at https://github.com/supertone-inc/super-monotonic-align.

eess.AS↗

arXiv2025

Motif-2-12.7B-Reasoning: A Practitioner's Guide to RL Training Recipes

We introduce Motif-2-12.7B-Reasoning, a 12.7B parameter language model designed to bridge the gap between open-weight systems and proprietary frontier models in complex reasoning and long-context understanding. Addressing the common challenges of model collapse and training instability in reasoning adaptation, we propose a comprehensive, reproducible training recipe spanning system, data, and algorithmic optimizations. Our approach combines memory-efficient infrastructure for 64K-token contexts using hybrid parallelism and kernel-level optimizations with a two-stage Supervised Fine-Tuning (SFT) curriculum that mitigates distribution mismatch through verified, aligned synthetic data. Furthermore, we detail a robust Reinforcement Learning Fine-Tuning (RLFT) pipeline that stabilizes training via difficulty-aware data filtering and mixed-policy trajectory reuse. Empirical results demonstrate that Motif-2-12.7B-Reasoning achieves performance comparable to models with significantly larger parameter counts across mathematics, coding, and agentic benchmarks, offering the community a competitive open model and a practical blueprint for scaling reasoning capabilities under realistic compute constraints.

cs.AI↗

arXiv2025

Motif 2 12.7B technical report

We introduce Motif-2-12.7B, a new open-weight foundation model that pushes the efficiency frontier of large language models by combining architectural innovation with system-level optimization. Designed for scalable language understanding and robust instruction generalization under constrained compute budgets, Motif-2-12.7B builds upon Motif-2.6B with the integration of Grouped Differential Attention (GDA), which improves representational efficiency by disentangling signal and noise-control attention pathways. The model is pre-trained on 5.5 trillion tokens spanning diverse linguistic, mathematical, scientific, and programming domains using a curriculum-driven data scheduler that gradually changes the data composition ratio. The training system leverages the MuonClip optimizer alongside custom high-performance kernels, including fused PolyNorm activations and the Parallel Muon algorithm, yielding significant throughput and memory efficiency gains in large-scale distributed environments. Post-training employs a three-stage supervised fine-tuning pipeline that successively enhances general instruction adherence, compositional understanding, and linguistic precision. Motif-2-12.7B demonstrates competitive performance across diverse benchmarks, showing that thoughtful architectural scaling and optimized training design can rival the capabilities of much larger models.

cs.CL↗

arXiv2025

Lesion-Aware Post-Training of Latent Diffusion Models for Synthesizing Diffusion MRI from CT Perfusion

Image-to-Image translation models can help mitigate various challenges inherent to medical image acquisition. Latent diffusion models (LDMs) leverage efficient learning in compressed latent space and constitute the core of state-of-the-art generative image models. However, this efficiency comes with a trade-off, potentially compromising crucial pixel-level detail essential for high-fidelity medical images. This limitation becomes particularly critical when generating clinically significant structures, such as lesions, which often occupy only a small portion of the image. Failure to accurately reconstruct these regions can severely impact diagnostic reliability and clinical decision-making. To overcome this limitation, we propose a novel post-training framework for LDMs in medical image-to-image translation by incorporating lesion-aware medical pixel space objectives. This approach is essential, as it not only enhances overall image quality but also improves the precision of lesion delineation. We evaluate our framework on brain CT-to-MRI translation in acute ischemic stroke patients, where early and accurate diagnosis is critical for optimal treatment selection and improved patient outcomes. While diffusion MRI is the gold standard for stroke diagnosis, its clinical utility is often constrained by high costs and low accessibility. Using a dataset of 817 patients, we demonstrate that our framework improves overall image quality and enhances lesion delineation when synthesizing DWI and ADC images from CT perfusion scans, outperforming existing image-to-image translation models. Furthermore, our post-training strategy is easily adaptable to pre-trained LDMs and exhibits substantial potential for broader applications across diverse medical image translation tasks.

cs.CV↗

arXiv2025

Grouped Differential Attention

The self-attention mechanism, while foundational to modern Transformer architectures, suffers from a critical inefficiency: it frequently allocates substantial attention to redundant or noisy context. Differential Attention addressed this by using subtractive attention maps for signal and noise, but its required balanced head allocation imposes rigid constraints on representational flexibility and scalability. To overcome this, we propose Grouped Differential Attention (GDA), a novel approach that introduces unbalanced head allocation between signal-preserving and noise-control groups. GDA significantly enhances signal focus by strategically assigning more heads to signal extraction and fewer to noise-control, stabilizing the latter through controlled repetition (akin to GQA). This design achieves stronger signal fidelity with minimal computational overhead. We further extend this principle to group-differentiated growth, a scalable strategy that selectively replicates only the signal-focused heads, thereby ensuring efficient capacity expansion. Through large-scale pretraining and continual training experiments, we demonstrate that moderate imbalance ratios in GDA yield substantial improvements in generalization and stability compared to symmetric baselines. Our results collectively establish that ratio-aware head allocation and selective expansion offer an effective and practical path toward designing scalable, computation-efficient Transformer architectures.

cs.LG↗

arXiv2025

Domain-Specialized Interactive Segmentation Framework for Meningioma Radiotherapy Planning

Precise delineation of meningiomas is crucial for effective radiotherapy (RT) planning, directly influencing treatment efficacy and preservation of adjacent healthy tissues. While automated deep learning approaches have demonstrated considerable potential, achieving consistently accurate clinical segmentation remains challenging due to tumor heterogeneity. Interactive Medical Image Segmentation (IMIS) addresses this challenge by integrating advanced AI techniques with clinical input. However, generic segmentation tools, despite widespread applicability, often lack the specificity required for clinically critical and disease-specific tasks like meningioma RT planning. To overcome these limitations, we introduce Interactive-MEN-RT, a dedicated IMIS tool specifically developed for clinician-assisted 3D meningioma segmentation in RT workflows. The system incorporates multiple clinically relevant interaction methods, including point annotations, bounding boxes, lasso tools, and scribbles, enhancing usability and clinical precision. In our evaluation involving 500 contrast-enhanced T1-weighted MRI scans from the BraTS 2025 Meningioma RT Segmentation Challenge, Interactive-MEN-RT demonstrated substantial improvement compared to other segmentation methods, achieving Dice similarity coefficients of up to 77.6\% and Intersection over Union scores of 64.8\%. These results emphasize the need for clinically tailored segmentation solutions in critical applications such as meningioma RT planning. The code is publicly available at: https://github.com/snuh-rad-aicon/Interactive-MEN-RT

cs.CV↗

arXiv2025

CapSpeech: Enabling Downstream Applications in Style-Captioned Text-to-Speech

Recent advancements in generative artificial intelligence have significantly transformed the field of style-captioned text-to-speech synthesis (CapTTS). However, adapting CapTTS to real-world applications remains challenging due to the lack of standardized, comprehensive datasets and limited research on downstream tasks built upon CapTTS. To address these gaps, we introduce CapSpeech, a new benchmark designed for a series of CapTTS-related tasks, including style-captioned text-to-speech synthesis with sound events (CapTTS-SE), accent-captioned TTS (AccCapTTS), emotion-captioned TTS (EmoCapTTS), and text-to-speech synthesis for chat agent (AgentTTS). CapSpeech comprises over 10 million machine-annotated audio-caption pairs and nearly 0.36 million human-annotated audio-caption pairs. In addition, we introduce two new datasets collected and recorded by a professional voice actor and experienced audio engineers, specifically for the AgentTTS and CapTTS-SE tasks. Alongside the datasets, we conduct comprehensive experiments using both autoregressive and non-autoregressive models on CapSpeech. Our results demonstrate high-fidelity and highly intelligible speech synthesis across a diverse range of speaking styles. To the best of our knowledge, CapSpeech is the largest available dataset offering comprehensive annotations for CapTTS-related tasks. The experiments and findings further provide valuable insights into the challenges of developing CapTTS systems.

eess.AS↗

arXiv2025

Improving Test-Time Performance of RVQ-based Neural Codecs

The residual vector quantization (RVQ) technique plays a central role in recent advances in neural audio codecs. These models effectively synthesize high-fidelity audio from a limited number of codes due to the hierarchical structure among quantization levels. In this paper, we propose an encoding algorithm to further enhance the synthesis quality of RVQ-based neural codecs at test-time. Firstly, we point out the suboptimal nature of quantized vectors generated by conventional methods. We demonstrate that quantization error can be mitigated by selecting a different set of codes. Subsequently, we present our encoding algorithm, designed to identify a set of discrete codes that achieve a lower quantization error. We then apply the proposed method to pre-trained models and evaluate its efficacy using diverse metrics. Our experimental findings validate that our method not only reduces quantization errors, but also improves synthesis quality.

eess.AS↗

arXiv2025

Expanding Foundational Language Capabilities in Open-Source LLMs through a Korean Case Study

We introduce Llama-3-Motif, a language model consisting of 102 billion parameters, specifically designed to enhance Korean capabilities while retaining strong performance in English. Developed on the Llama 3 architecture, Llama-3-Motif employs advanced training techniques, including LlamaPro and Masked Structure Growth, to effectively scale the model without altering its core Transformer architecture. Using the MoAI platform for efficient training across hyperscale GPU clusters, we optimized Llama-3-Motif using a carefully curated dataset that maintains a balanced ratio of Korean and English data. Llama-3-Motif shows decent performance on Korean-specific benchmarks, outperforming existing models and achieving results comparable to GPT-4.

cs.CL↗

arXiv2025

Motif 2.6B Technical Report

Recent advancements in Large Language Models (LLMs) have revolutionized artificial intelligence, yet developing an effective foundational LLM that balances high performance with computational efficiency remains challenging, especially for emerging research groups. To address this gap, we introduce Motif-2.6B, a 2.6-billion-parameter foundation model designed to democratize advanced LLM capabilities. Motif-2.6B incorporates several innovative architectural enhancements, including Differential Attention and PolyNorm activation functions, which improve long-context comprehension, reduce hallucination, and enhance in-context learning capabilities. We rigorously tested multiple novel architectural components through extensive experimentation to determine the optimal architecture for Motif-2.6B. Comprehensive evaluations demonstrate that Motif-2.6B consistently meets or exceeds the performance of similarly sized state-of-the-art models across diverse benchmarks, showcasing its effectiveness, scalability, and real-world applicability. Through detailed experiments and tailored techniques, Motif-2.6B significantly advances the landscape of efficient, scalable, and powerful foundational LLMs, offering valuable insights and a robust foundation for future research and deployment.

cs.LG↗