arXiv subjects

Junkun Chen

Publications and source records attributed to Junkun Chen.

29 records · Page 2Linked to original sources

arXiv2022

TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery

Machine learning has huge potential to revolutionize the field of drug discovery and is attracting increasing attention in recent years. However, lacking domain knowledge (e.g., which tasks to work on), standard benchmarks and data preprocessing pipelines are the main obstacles for machine learning researchers to work in this domain. To facilitate the progress of machine learning for drug discovery, we develop TorchDrug, a powerful and flexible machine learning platform for drug discovery built on top of PyTorch. TorchDrug benchmarks a variety of important tasks in drug discovery, including molecular property prediction, pretrained molecular representations, de novo molecular design and optimization, retrosynthsis prediction, and biomedical knowledge graph reasoning. State-of-the-art techniques based on geometric deep learning (or graph machine learning), deep generative models, reinforcement learning and knowledge graph reasoning are implemented for these tasks. TorchDrug features a hierarchical interface that facilitates customization from both novices and experts in this domain. Tutorials, benchmark results and documentation are available at https://torchdrug.ai. Code is released under Apache License 2.0.

cs.LG↗

arXiv2021

Improving Simultaneous Translation by Incorporating Pseudo-References with Fewer Reorderings

Simultaneous translation is vastly different from full-sentence translation, in the sense that it starts translation before the source sentence ends, with only a few words delay. However, due to the lack of large-scale, high-quality simultaneous translation datasets, most such systems are still trained on conventional full-sentence bitexts. This is far from ideal for the simultaneous scenario due to the abundance of unnecessary long-distance reorderings in those bitexts. We propose a novel method that rewrites the target side of existing full-sentence corpora into simultaneous-style translation. Experiments on Zh->En and Ja->En simultaneous translation show substantial improvements (up to +2.7 BLEU) with the addition of these generated pseudo-references.

cs.CL↗

arXiv2021

Fused Acoustic and Text Encoding for Multimodal Bilingual Pretraining and Speech Translation

Recently, representation learning for text and speech has successfully improved many language related tasks. However, all existing methods suffer from two limitations: (a) they only learn from one input modality, while a unified representation for both speech and text is needed by tasks such as end-to-end speech translation, and as a result,(b) they can not exploit various large-scale text and speech data and their performance is limited by the scarcity of parallel speech translation data.To address these problems, we propose a Fused Acoustic and Text Masked Language Model (FAT-MLM) which jointly learns a unified representation for both acoustic and text input from various types of corpora including parallel data for speech recognition and machine translation, and even pure speech and text data. Within this cross-modal representation learning framework, we further present an end-to-end model for Fused Acoustic and Text Speech Translation (FAT-ST). Experiments on three translation directions show that by fine-tuning from FAT-MLM, our proposed speech translation models substantially improve translation quality by up to +5.9 BLEU.

cs.CL↗

arXiv2021

RNNLogic: Learning Logic Rules for Reasoning on Knowledge Graphs

This paper studies learning logic rules for reasoning on knowledge graphs. Logic rules provide interpretable explanations when used for prediction as well as being able to generalize to other tasks, and hence are critical to learn. Existing methods either suffer from the problem of searching in a large search space (e.g., neural logic programming) or ineffective optimization due to sparse rewards (e.g., techniques based on reinforcement learning). To address these limitations, this paper proposes a probabilistic model called RNNLogic. RNNLogic treats logic rules as a latent variable, and simultaneously trains a rule generator as well as a reasoning predictor with logic rules. We develop an EM-based algorithm for optimization. In each iteration, the reasoning predictor is first updated to explore some generated logic rules for reasoning. Then in the E-step, we select a set of high-quality rules from all generated rules with both the rule generator and reasoning predictor via posterior inference; and in the M-step, the rule generator is updated with the rules selected in the E-step. Experiments on four datasets prove the effectiveness of RNNLogic.

cs.AI↗

arXiv2021

Direct Simultaneous Speech-to-Text Translation Assisted by Synchronized Streaming ASR

Simultaneous speech-to-text translation is widely useful in many scenarios. The conventional cascaded approach uses a pipeline of streaming ASR followed by simultaneous MT, but suffers from error propagation and extra latency. To alleviate these issues, recent efforts attempt to directly translate the source speech into target text simultaneously, but this is much harder due to the combination of two separate tasks. We instead propose a new paradigm with the advantages of both cascaded and end-to-end approaches. The key idea is to use two separate, but synchronized, decoders on streaming ASR and direct speech-to-text translation (ST), respectively, and the intermediate results of ASR guide the decoding policy of (but is not fed as input to) ST. During training time, we use multitask learning to jointly learn these two tasks with a shared encoder. En-to-De and En-to-Es experiments on the MuSTC dataset demonstrate that our proposed technique achieves substantially better translation quality at similar levels of latency.

cs.CL↗

arXiv2021

MAM: Masked Acoustic Modeling for End-to-End Speech-to-Text Translation

End-to-end Speech-to-text Translation (E2E-ST), which directly translates source language speech to target language text, is widely useful in practice, but traditional cascaded approaches (ASR+MT) often suffer from error propagation in the pipeline. On the other hand, existing end-to-end solutions heavily depend on the source language transcriptions for pre-training or multi-task training with Automatic Speech Recognition (ASR). We instead propose a simple technique to learn a robust speech encoder in a self-supervised fashion only on the speech side, which can utilize speech data without transcription. This technique termed Masked Acoustic Modeling (MAM), not only provides an alternative solution to improving E2E-ST, but also can perform pre-training on any acoustic signals (including non-speech ones) without annotation. We conduct our experiments over 8 different translation directions. In the setting without using any transcriptions, our technique achieves an average improvement of +1.1 BLEU, and +2.3 BLEU with MAM pre-training. Pre-training of MAM with arbitrary acoustic signals also has an average improvement with +1.6 BLEU for those languages. Compared with ASR multi-task learning solution, which replies on transcription during training, our pre-trained MAM model, which does not use transcription, achieves similar accuracy.

cs.CL↗

arXiv2020

VATEX: A Large-Scale, High-Quality Multilingual Dataset for Video-and-Language Research

We present a new large-scale multilingual video description dataset, VATEX, which contains over 41,250 videos and 825,000 captions in both English and Chinese. Among the captions, there are over 206,000 English-Chinese parallel translation pairs. Compared to the widely-used MSR-VTT dataset, VATEX is multilingual, larger, linguistically complex, and more diverse in terms of both video and natural language descriptions. We also introduce two tasks for video-and-language research based on VATEX: (1) Multilingual Video Captioning, aimed at describing a video in various languages with a compact unified captioning model, and (2) Video-guided Machine Translation, to translate a source language description into the target language using the video information as additional spatiotemporal context. Extensive experiments on the VATEX dataset show that, first, the unified multilingual model can not only produce both English and Chinese descriptions for a video more efficiently, but also offer improved performance over the monolingual models. Furthermore, we demonstrate that the spatiotemporal video context can be effectively utilized to align source and target languages and thus assist machine translation. In the end, we discuss the potentials of using VATEX for other video-and-language research.

cs.CV↗

arXiv2019

DropAttention: A Regularization Method for Fully-Connected Self-Attention Networks

Variants dropout methods have been designed for the fully-connected layer, convolutional layer and recurrent layer in neural networks, and shown to be effective to avoid overfitting. As an appealing alternative to recurrent and convolutional layers, the fully-connected self-attention layer surprisingly lacks a specific dropout method. This paper explores the possibility of regularizing the attention weights in Transformers to prevent different contextualized feature vectors from co-adaption. Experiments on a wide range of tasks show that DropAttention can improve performance and reduce overfitting.

cs.CL↗

arXiv2018

Exploring Shared Structures and Hierarchies for Multiple NLP Tasks

Designing shared neural architecture plays an important role in multi-task learning. The challenge is that finding an optimal sharing scheme heavily relies on the expert knowledge and is not scalable to a large number of diverse tasks. Inspired by the promising work of neural architecture search (NAS), we apply reinforcement learning to automatically find possible shared architecture for multi-task learning. Specifically, we use a controller to select from a set of shareable modules and assemble a task-specific architecture, and repeat the same procedure for other tasks. The controller is trained with reinforcement learning to maximize the expected accuracies for all tasks. We conduct extensive experiments on two types of tasks, text classification and sequence labeling, which demonstrate the benefits of our approach.

cs.AI↗

arXiv2018

Same Representation, Different Attentions: Shareable Sentence Representation Learning from Multiple Tasks

Distributed representation plays an important role in deep learning based natural language processing. However, the representation of a sentence often varies in different tasks, which is usually learned from scratch and suffers from the limited amounts of training data. In this paper, we claim that a good sentence representation should be invariant and can benefit the various subsequent tasks. To achieve this purpose, we propose a new scheme of information sharing for multi-task learning. More specifically, all tasks share the same sentence representation and each task can select the task-specific information from the shared sentence representation with attention mechanism. The query vector of each task's attention could be either static parameters or generated dynamically. We conduct extensive experiments on 16 different text classification tasks, which demonstrate the benefits of our architecture.

cs.CL↗

arXiv2018

Meta Multi-Task Learning for Sequence Modeling

Semantic composition functions have been playing a pivotal role in neural representation learning of text sequences. In spite of their success, most existing models suffer from the underfitting problem: they use the same shared compositional function on all the positions in the sequence, thereby lacking expressive power due to incapacity to capture the richness of compositionality. Besides, the composition functions of different tasks are independent and learned from scratch. In this paper, we propose a new sharing scheme of composition function across multiple tasks. Specifically, we use a shared meta-network to capture the meta-knowledge of semantic composition and generate the parameters of the task-specific semantic composition models. We conduct extensive experiments on two types of tasks, text classification and sequence tagging, which demonstrate the benefits of our approach. Besides, we show that the shared meta-knowledge learned by our proposed model can be regarded as off-the-shelf knowledge and easily transferred to new tasks.

cs.AI↗