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Junping Shi

Publications and source records attributed to Junping Shi.

At least 19 recordsLinked to original sources

Dynamics of a coupled nonlocal PDE-ODE system with spatial memory: well-posedness, stability, and bifurcation analysis

Nonlocal aggregation-diffusion models, when coupled with a spatial map, can capture cognitive and memory-based influences on animal movement and population-level patterns. In this work, we study a one-dimensional reaction-diffusion-aggregation system in which a population's spatiotemporal dynamics are tightly linked to a separate, dynamically updating map. Depending on the local population density, the map amplifies and suppresses certain landscape regions and contributes to directed movement through a nonlocal spatial kernel. After establishing the well-posedness of the coupled PDE-ODE system, we perform a linear stability analysis to identify critical aggregation strengths. We then perform a rigorous bifurcation analysis to determine the precise solution behavior at a steady state near these critical thresholds, deciding whether the bifurcation is sub- or supercritical and the stability of the emergent branch. Based on our analytical findings, we highlight several interesting biological consequences. First, we observe that whether the spatial map functions as attractive or repulsive depends precisely on the map's relative excitation rate versus adaptory rate: when the excitatory effect is larger (smaller) than the adaptatory effect, the map is attractive (repulsive). Second, in the absence of growth dynamics, populations can only form a single aggregate. Therefore, the presence of intraspecific competition is necessary to drive multi-peaked aggregations, reflecting higher-frequency spatial patterns. Finally, we show how subcritical bifurcations can trigger abrupt shifts in average population abundance, suggesting a tipping-point phenomenon in which moderate changes in movement parameters can cause a sudden population decline.

math.AP

On determination of the bifurcation type for a free boundary problem modeling tumor growth

Many mathematical models in different disciplines involve the formulation of free boundary problems, where the domain boundaries are not predefined. These models present unique challenges, notably the nonlinear coupling between the solution and the boundary, which complicates the identification of bifurcation types. This paper mainly investigates the structure of symmetry-breaking bifurcations in a two-dimensional free boundary problem modeling tumor growth. By expanding the solution to a high order with respect to a small parameter and computing the bifurcation direction at each bifurcation point, we demonstrate that all the symmetry-breaking bifurcations occurred in the model, as established by the Crandall-Rabinowitz Bifurcation From Simple Eigenvalue Theorem, are pitchfork bifurcations. These findings reveal distinct behaviors between the two-dimensional and three-dimensional cases of the same model.

math.AP

Biological Aggregations from Spatial Memory and Nonlocal Advection

We investigate a nonlocal single-species reaction-diffusion-advection model that integrates the spatial memory of previously visited locations and nonlocal detection in space, resulting in a coupled PDE-ODE system reflective of several existing models found in spatial ecology. We prove the existence and uniqueness of a H\"older continuous weak solution in one spatial dimension under some general conditions, allowing for discontinuous kernels such as the top-hat detection kernel. A robust spectral and bifurcation analysis is also performed, providing the rigorous analytical study not yet found in the existing literature. In particular, the essential spectrum is shown to be entirely negative, and we classify the nature of the bifurcation near the critical values obtained via a linear stability analysis. A pseudo-spectral method is used to solve and plot the steady states near and far away from these critical values, complementing the analytical insights.

math.AP

Evolution of dispersal in advective patchy environments

We study a two-species competition model in a patchy advective environment, where the species are subject to both directional drift and undirectional random dispersal between patches and there are losses of individuals in the downstream end (e.g., due to the flow into a lake or ocean). The two competing species are assumed to have the same growth rates but different advection and random dispersal rates. We focus our studies on the properties of an associated eigenvalue problem which characterizes the extinction/persistence dynamics of the underlying patch population model. We also derive conditions on the advection and random dispersal rates under which a mutating species can or cannot invade the resident species.

math.DS

Global dynamics of a Lotka-Volterra competition patch model

The global dynamics of the two-species Lotka-Volterra competition patch model with asymmetric dispersal is classified under the assumptions of weak competition and the weighted digraph of the connection matrix is strongly connected and cycle-balanced. It is shown that in the long time, either the competition exclusion holds that one species becomes extinct, or the two species reach a coexistence equilibrium, and the outcome of the competition is determined by the strength of the inter-specific competition and the dispersal rates. Our main techniques in the proofs follow the theory of monotone dynamical system and a graph-theoretic approach based on the Tree-Cycle identity.

math.CA

Impacts of density-dependent predation, cannibalism and fishing in a stage-structured population model of the blue crab in Chesapeake Bay

The blue crab (Callinectes sapidus) is a dominant ecological species of high commercial value. Spawning stock and recruitment of the Chesapeake Bay population declined by 80% in the 1990s. After severe management actions were implemented in 2008, female abundance rebounded to pre-1994 levels and stabilized. The stepwise decline in the early 1990s, followed by a consistently low level of abundance for 15 y and a jump to high abundance after 2008, suggested the existence of alternative stable states. Alternatively, high fishing pressure combined with low recruitment in 1992 could have triggered a proportional decline in the population, followed by a population increase in 2008 due to rigorous management actions that reduced fishing. We evaluated these alternatives with a stage-structured dynamic population model using ordinary differential equations. In addition, stock assessment models assume that fishing and mortality are independent of density. Hence, we also investigated the role of density-dependent predation, cannibalism and fishing in blue crab population dynamics. We conclude that for the blue crab population in Chesapeake Bay: (1) bistable positive states are not likely with biologically realistic parameter values; (2) hyperbolic (depensatory) fishing will not produce extinction at the range of population densities observed in the bay; and (3) crabs can survive a higher fishing rate under the more realistic assumption of sigmoidal (density-dependent) predation and cannibalism than under constant (density-independent) predation and cannibalism. These collectively indicate that the blue crab population in Chesapeake Bay is resilient to a range of biotic and abiotic disturbances.

q-bio.PE

Global stability of spatially nonhomogeneous steady state solution in a diffusive Holling-Tanner predator-prey model

The global stability of the nonhomogeneous positive steady state solution to a diffusive Holling-Tanner predator-prey model in a heterogeneous environment is proved by using a newly constructed Lyapunov function and estimates of nonconstant steady state solutions. The techniques developed here can be adapted for other spatially heterogeneous consumer-resource models.

math.AP

Effect of spatial average on the spatiotemporal pattern formation of reaction-diffusion systems

Some quantities in the reaction-diffusion models from cellular biology or ecology depend on the spatial average of density functions instead of local density functions. We show that such nonlocal spatial average can induce instability of constant steady state, which is different from classical Turing instability. For a general scalar equation with spatial average, the occurrence of the steady state bifurcation is rigorously proved, and the formula to determine the bifurcation direction and the stability of the bifurcating steady state is given. For the two-species model, spatially non-homogeneous time-periodic orbits could arise due to spatially non-homogeneous Hopf bifurcation from the constant equilibrium. Examples from a nonlocal cooperative Lotka-Volterra model and a nonlocal Rosenzweig-MacArthur predator-prey model are used to demonstrate the bifurcation of spatially non-homogeneous patterns.

math.AP

Model of Algal Growth Depending on Nutrients and Inorganic Carbon in a Poorly Mixed Water Column

In this paper, we establish a reaction-diffusion-advection partial differential equation model to describe the growth of algae depending on both nutrients and inorganic carbon in a poorly mixed water column. Nutrients from the water bottom and inorganic carbon from the water surface form an asymmetric resource supply mechanism on the algal growth. The existence and stability of semi-trivial steady state and coexistence steady state of the model are proved, and a threshold condition for the regime shift from extinction to survival of algae is established. The influence of environmental parameters on the vertical distribution of algae is investigated in the water column. It is shown that the vertical distribution of algae can exhibit many different profiles under the joint limitation of nutrients and inorganic carbon.

q-bio.PE

Existence and stability of steady state solutions of reaction-diffusion equations with nonlocal delay effect

A general reaction-diffusion equation with spatiotemporal delay and homogeneous Dirichlet boundary condition is considered. The existence and stability of positive steady state solutions are proved via studying an equivalent reaction-diffusion system without nonlocal and delay structure and applying local and global bifurcation theory. The global structure of the set of steady states is characterized according to type of nonlinearities and diffusion coefficient. Our general results are applied to diffusive logistic growth models and Nicholson's blowflies type models.

math.AP

Asymptotic profiles of the steady states for an SIS epidemic patch model with asymmetric connectivity matrix

The dynamics of an SIS epidemic patch model with asymmetric connectivity matrix is analyzed. It is shown that the basic reproduction number $R_0$ is strictly decreasing with respect to the dispersal rate of the infected individuals, and the model has a unique endemic equilibrium if $R_0>1$. The asymptotic profiles of the endemic equilibrium for small dispersal rates are characterized. In particular, it is shown that the endemic equilibrium converges to a limiting disease-free equilibrium as the dispersal rate of susceptible individuals tends to zero, and the limiting disease-free equilibrium has a positive number of susceptible individuals on each low-risk patch. Moreover a sufficient and necessary condition is found to guarantee that the limiting disease-free equilibrium has no positive number of susceptible individuals on each high-risk patch. Our results extend earlier results for symmetric connectivity matrix, and we also partially solve an open problem by Allen et al. (SIAM J. Appl. Math., 67: 1283-1309, 2007).

math.DS

Spectral Monotonicity of Perturbed Quasi-positive Matrices with Applications in Population Dynamics

Threshold values in population dynamics can be formulated as spectral bounds of matrices, determining the dichotomy of population persistence and extinction. For a square matrix $\mu A + Q$, where $A$ is a quasi-positive matrix describing population dispersal among patches in a heterogeneous environment and $Q$ is a diagonal matrix encoding within-patch population dynamics, the monotonicy of its spectral bound with respect to dispersal speed/coupling strength/travel frequency $\mu$ is established via two methods. The first method is an analytic derivation utilizing a graph-theoretic approach based on Kirchhoff's Matrix-Tree Theorem; the second method employs Collatz-Wielandt formula from matrix theory and complex analysis arguments. It turns out that our established result is a slightly strengthen version of Karlin-Altenberg's Theorem, which has previously been discovered independently while investigating reduction principle in evolution biology and evolution dispersal in patchy landscapes. Nevertheless, our result provides a new and effective approach in stability analysis of complex biological systems in a heterogeneous environment. We illustrate this by applying our result to well-known ecological models of single species, predator-prey and competition, and an epidemiological model of susceptible-infected-susceptible (SIS) type. We successfully solve some open problems in the literature of population dynamics.

math.DS

Asymptotic profiles of basic reproduction number for epidemic spreading in heterogeneous environment

The effect of diffusion rates on the basic reproduction number of a general compartmental reaction-diffusion epidemic model in a heterogeneous environment is considered. It is shown when the diffusion rates tend to zero, the limit of the basic reproduction number is the maximum value of the local reproduction number on the spatial domain. On the other hand when the diffusion rates tend to infinity, the basic reproduction number tends to the spectral radius of the "average"~next generation matrix. These asymptotic limits of basic reproduction number hold for a class of general spatially heterogeneous compartmental epidemic models, and they are applied to a wide variety of examples.

math.DS

Dynamics of a Reaction-Diffusion Benthic-Drift Model with Strong Allee Effect Growth

The dynamics of a reaction-diffusion-advection benthic-drift population model that links changes in the flow regime and habitat availability with population dynamics is studied. In the model, the stream is divided into drift zone and benthic zone, and the population is divided into two interacting compartments, individuals residing in the benthic zone and individuals dispersing in the drift zone. The benthic population growth is assumed to be of strong Allee effect type. The influence of flow speed and individual transfer rates between zones on the population persistence and extinction is considered, and the criteria of population persistence or extinction are formulated and proved.

math.AP

Global dynamics of the diffusive Lotka-Volterra competition model with stage structure

The global asymptotic behavior of the classical diffusive Lotka-Volterra competition model with stage structure is studied. A complete classification of the global dynamics is given for the weak competition case. It is shown that under otherwise same conditions, the species with shorter maturation time prevails. The method is also applied to the global dynamics of another delayed competition models.

math.DS

Global stability of nonhomogeneous equilibrium solution for the diffusive Lotka-Volterra competition model

A diffusive Lotka-Volterra competition model is considered for the combined effect of spatial dispersal and spatial variations of resource on the population persistence and exclusion. First it is shown that in a two-species system in which the diffusion coefficients, resource functions and competition rates are all spatially heterogeneous, the positive equilibrium solution is globally asymptotically stable when it exists. Secondly the existence and global asymptotic stability of the positive and semi-trivial equilibrium solutions are obtained for the model with arbitrary number of species under the assumption of spatially heterogeneous resource distribution. A new Lyapunov functional method is developed to prove the global stability of a non-constant equilibrium solution in heterogeneous environment.

math.AP

Model of pattern formation in marsh ecosystems with nonlocal interactions

Smooth cordgrass Spartina alterniflora is a grass species commonly found in tidal marshes. It is an ecosystem engineer, capable of modifying the structure of its surrounding environment through various feedbacks. The scale-dependent feedback between marsh grass and sediment volume is particularly of interest. Locally, the marsh vegetation attenuates hydrodynamic energy, enhancing sediment accretion and promoting further vegetation growth. In turn, the diverted water flow promotes the formation of erosion troughs over longer distances. This scale-dependent feedback may explain the characteristic spatially varying marsh shoreline, commonly observed in nature. We propose a mathematical framework to model grass-sediment dynamics as a system of reaction-diffusion equations with an additional nonlocal term quantifying the short-range positive and long-range negative grass-sediment interactions. We use a Mexican-hat kernel function to model this scale-dependent feedback. We perform a steady state biharmonic approximation of our system and derive conditions for the emergence of spatial patterns, corresponding to a spatially varying marsh shoreline. We find that the emergence of such patterns depends on the spatial scale and strength of the scale-dependent feedback, specified by the width and amplitude of the Mexican-hat kernel function.

nlin.PS