arXiv subjects

Junwei Su

Publications and source records attributed to Junwei Su.

30 records · Page 2Linked to original sources

arXiv2024

Heta: Distributed Training of Heterogeneous Graph Neural Networks

Heterogeneous Graph Neural Networks (HGNNs) leverage diverse semantic relationships in Heterogeneous Graphs (HetGs) and have demonstrated remarkable learning performance in various applications. However, current distributed GNN training systems often overlook unique characteristics of HetGs, such as varying feature dimensions and the prevalence of missing features among nodes, leading to suboptimal performance or even incompatibility with distributed HGNN training. We introduce Heta, a framework designed to address the communication bottleneck in distributed HGNN training. Heta leverages the inherent structure of HGNNs - independent relation-specific aggregations for each relation, followed by a cross-relation aggregation - and advocates for a novel Relation-Aggregation-First computation paradigm. It performs relation-specific aggregations within graph partitions and then exchanges partial aggregations. This design, coupled with a new graph partitioning method that divides a HetG based on its graph schema and HGNN computation dependency, substantially reduces communication overhead. Heta further incorporates an innovative GPU feature caching strategy that accounts for the different cache miss-penalties associated with diverse node types. Comprehensive evaluations of various HGNN models and large heterogeneous graph datasets demonstrate that Heta outperforms state-of-the-art systems like DGL and GraphLearn by up to 5.8x and 2.3x in end-to-end epoch time, respectively.

cs.DC↗

arXiv2024

MSPipe: Efficient Temporal GNN Training via Staleness-Aware Pipeline

Memory-based Temporal Graph Neural Networks (MTGNNs) are a class of temporal graph neural networks that utilize a node memory module to capture and retain long-term temporal dependencies, leading to superior performance compared to memory-less counterparts. However, the iterative reading and updating process of the memory module in MTGNNs to obtain up-to-date information needs to follow the temporal dependencies. This introduces significant overhead and limits training throughput. Existing optimizations for static GNNs are not directly applicable to MTGNNs due to differences in training paradigm, model architecture, and the absence of a memory module. Moreover, they do not effectively address the challenges posed by temporal dependencies, making them ineffective for MTGNN training. In this paper, we propose MSPipe, a general and efficient framework for MTGNNs that maximizes training throughput while maintaining model accuracy. Our design addresses the unique challenges associated with fetching and updating node memory states in MTGNNs by integrating staleness into the memory module. However, simply introducing a predefined staleness bound in the memory module to break temporal dependencies may lead to suboptimal performance and lack of generalizability across different models and datasets. To solve this, we introduce an online pipeline scheduling algorithm in MSPipe that strategically breaks temporal dependencies with minimal staleness and delays memory fetching to obtain fresher memory states. Moreover, we design a staleness mitigation mechanism to enhance training convergence and model accuracy. We provide convergence analysis and prove that MSPipe maintains the same convergence rate as vanilla sample-based GNN training. Experimental results show that MSPipe achieves up to 2.45x speed-up without sacrificing accuracy, making it a promising solution for efficient MTGNN training.

cs.LG↗

arXiv2024

On the Limitation and Experience Replay for GNNs in Continual Learning

Continual learning seeks to empower models to progressively acquire information from a sequence of tasks. This approach is crucial for many real-world systems, which are dynamic and evolve over time. Recent research has witnessed a surge in the exploration of Graph Neural Networks (GNN) in Node-wise Graph Continual Learning (NGCL), a practical yet challenging paradigm involving the continual training of a GNN on node-related tasks. Despite recent advancements in continual learning strategies for GNNs in NGCL, a thorough theoretical understanding, especially regarding its learnability, is lacking. Learnability concerns the existence of a learning algorithm that can produce a good candidate model from the hypothesis/weight space, which is crucial for model selection in NGCL development. This paper introduces the first theoretical exploration of the learnability of GNN in NGCL, revealing that learnability is heavily influenced by structural shifts due to the interconnected nature of graph data. Specifically, GNNs may not be viable for NGCL under significant structural changes, emphasizing the need to manage structural shifts. To mitigate the impact of structural shifts, we propose a novel experience replay method termed Structure-Evolution-Aware Experience Replay (SEA-ER). SEA-ER features an innovative experience selection strategy that capitalizes on the topological awareness of GNNs, alongside a unique replay strategy that employs structural alignment to effectively counter catastrophic forgetting and diminish the impact of structural shifts on GNNs in NGCL. Our extensive experiments validate our theoretical insights and the effectiveness of SEA-ER.

cs.LG↗

arXiv2024

On the Topology Awareness and Generalization Performance of Graph Neural Networks

Many computer vision and machine learning problems are modelled as learning tasks on graphs where graph neural networks GNNs have emerged as a dominant tool for learning representations of graph structured data A key feature of GNNs is their use of graph structures as input enabling them to exploit the graphs inherent topological properties known as the topology awareness of GNNs Despite the empirical successes of GNNs the influence of topology awareness on generalization performance remains unexplored, particularly for node level tasks that diverge from the assumption of data being independent and identically distributed IID The precise definition and characterization of the topology awareness of GNNs especially concerning different topological features are still unclear This paper introduces a comprehensive framework to characterize the topology awareness of GNNs across any topological feature Using this framework we investigate the effects of topology awareness on GNN generalization performance Contrary to the prevailing belief that enhancing the topology awareness of GNNs is always advantageous our analysis reveals a critical insight improving the topology awareness of GNNs may inadvertently lead to unfair generalization across structural groups which might not be desired in some scenarios Additionally we conduct a case study using the intrinsic graph metric the shortest path distance on various benchmark datasets The empirical results of this case study confirm our theoretical insights Moreover we demonstrate the practical applicability of our framework by using it to tackle the cold start problem in graph active learning

cs.LG↗

arXiv2024

Improving Implicit Regularization of SGD with Preconditioning for Least Square Problems

Stochastic gradient descent (SGD) exhibits strong algorithmic regularization effects in practice and plays an important role in the generalization of modern machine learning. However, prior research has revealed instances where the generalization performance of SGD is worse than ridge regression due to uneven optimization along different dimensions. Preconditioning offers a natural solution to this issue by rebalancing optimization across different directions. Yet, the extent to which preconditioning can enhance the generalization performance of SGD and whether it can bridge the existing gap with ridge regression remains uncertain. In this paper, we study the generalization performance of SGD with preconditioning for the least squared problem. We make a comprehensive comparison between preconditioned SGD and (standard \& preconditioned) ridge regression. Our study makes several key contributions toward understanding and improving SGD with preconditioning. First, we establish excess risk bounds (generalization performance) for preconditioned SGD and ridge regression under an arbitrary preconditions matrix. Second, leveraging the excessive risk characterization of preconditioned SGD and ridge regression, we show that (through construction) there exists a simple preconditioned matrix that can make SGD comparable to (standard \& preconditioned) ridge regression. Finally, we show that our proposed preconditioning matrix is straightforward enough to allow robust estimation from finite samples while maintaining a theoretical improvement. Our empirical results align with our theoretical findings, collectively showcasing the enhanced regularization effect of preconditioned SGD.

cs.LG↗

arXiv2024

PRES: Toward Scalable Memory-Based Dynamic Graph Neural Networks

Memory-based Dynamic Graph Neural Networks (MDGNNs) are a family of dynamic graph neural networks that leverage a memory module to extract, distill, and memorize long-term temporal dependencies, leading to superior performance compared to memory-less counterparts. However, training MDGNNs faces the challenge of handling entangled temporal and structural dependencies, requiring sequential and chronological processing of data sequences to capture accurate temporal patterns. During the batch training, the temporal data points within the same batch will be processed in parallel, while their temporal dependencies are neglected. This issue is referred to as temporal discontinuity and restricts the effective temporal batch size, limiting data parallelism and reducing MDGNNs' flexibility in industrial applications. This paper studies the efficient training of MDGNNs at scale, focusing on the temporal discontinuity in training MDGNNs with large temporal batch sizes. We first conduct a theoretical study on the impact of temporal batch size on the convergence of MDGNN training. Based on the analysis, we propose PRES, an iterative prediction-correction scheme combined with a memory coherence learning objective to mitigate the effect of temporal discontinuity, enabling MDGNNs to be trained with significantly larger temporal batches without sacrificing generalization performance. Experimental results demonstrate that our approach enables up to a 4x larger temporal batch (3.4x speed-up) during MDGNN training.

cs.LG↗

arXiv2024

Towards Robust Graph Incremental Learning on Evolving Graphs

Incremental learning is a machine learning approach that involves training a model on a sequence of tasks, rather than all tasks at once. This ability to learn incrementally from a stream of tasks is crucial for many real-world applications. However, incremental learning is a challenging problem on graph-structured data, as many graph-related problems involve prediction tasks for each individual node, known as Node-wise Graph Incremental Learning (NGIL). This introduces non-independent and non-identically distributed characteristics in the sample data generation process, making it difficult to maintain the performance of the model as new tasks are added. In this paper, we focus on the inductive NGIL problem, which accounts for the evolution of graph structure (structural shift) induced by emerging tasks. We provide a formal formulation and analysis of the problem, and propose a novel regularization-based technique called Structural-Shift-Risk-Mitigation (SSRM) to mitigate the impact of the structural shift on catastrophic forgetting of the inductive NGIL problem. We show that the structural shift can lead to a shift in the input distribution for the existing tasks, and further lead to an increased risk of catastrophic forgetting. Through comprehensive empirical studies with several benchmark datasets, we demonstrate that our proposed method, Structural-Shift-Risk-Mitigation (SSRM), is flexible and easy to adapt to improve the performance of state-of-the-art GNN incremental learning frameworks in the inductive setting.

cs.LG↗

arXiv2024

MTRGL:Effective Temporal Correlation Discerning through Multi-modal Temporal Relational Graph Learning

In this study, we explore the synergy of deep learning and financial market applications, focusing on pair trading. This market-neutral strategy is integral to quantitative finance and is apt for advanced deep-learning techniques. A pivotal challenge in pair trading is discerning temporal correlations among entities, necessitating the integration of diverse data modalities. Addressing this, we introduce a novel framework, Multi-modal Temporal Relation Graph Learning (MTRGL). MTRGL combines time series data and discrete features into a temporal graph and employs a memory-based temporal graph neural network. This approach reframes temporal correlation identification as a temporal graph link prediction task, which has shown empirical success. Our experiments on real-world datasets confirm the superior performance of MTRGL, emphasizing its promise in refining automated pair trading strategies.

cs.LG↗

arXiv2023

CDMPP: A Device-Model Agnostic Framework for Latency Prediction of Tensor Programs

Deep Neural Networks (DNNs) have shown excellent performance in a wide range of machine learning applications. Knowing the latency of running a DNN model or tensor program on a specific device is useful in various tasks, such as DNN graph- or tensor-level optimization and device selection. Considering the large space of DNN models and devices that impede direct profiling of all combinations, recent efforts focus on building a predictor to model the performance of DNN models on different devices. However, none of the existing attempts have achieved a cost model that can accurately predict the performance of various tensor programs while supporting both training and inference accelerators. We propose CDMPP, an efficient tensor program latency prediction framework for both cross-model and cross-device prediction. We design an informative but efficient representation of tensor programs, called compact ASTs, and a pre-order-based positional encoding method, to capture the internal structure of tensor programs. We develop a domain-adaption-inspired method to learn domain-invariant representations and devise a KMeans-based sampling algorithm, for the predictor to learn from different domains (i.e., different DNN operators and devices). Our extensive experiments on a diverse range of DNN models and devices demonstrate that CDMPP significantly outperforms state-of-the-art baselines with 14.03% and 10.85% prediction error for cross-model and cross-device prediction, respectively, and one order of magnitude higher training efficiency. The implementation and the expanded dataset are available at https://github.com/joapolarbear/cdmpp.

cs.LG↗

arXiv2022

ABC: Aggregation before Communication, a Communication Reduction Framework for Distributed Graph Neural Network Training and Effective Partition

Graph Neural Networks(GNNs) are a family of neural models tailored for graph-structure data and have shown superior performance in learning representations for graph-structured data. However, training GNNs on large graphs remains challenging and a promising direction is distributed GNN training, which is to partition the input graph and distribute the workload across multiple machines. The key bottleneck of the existing distributed GNNs training framework is the across-machine communication induced by the dependency on the graph data and aggregation operator of GNNs. In this paper, we study the communication complexity during distributed GNNs training and propose a simple lossless communication reduction method, termed the Aggregation before Communication (ABC) method. ABC method exploits the permutation-invariant property of the GNNs layer and leads to a paradigm where vertex-cut is proved to admit a superior communication performance than the currently popular paradigm (edge-cut). In addition, we show that the new partition paradigm is particularly ideal in the case of dynamic graphs where it is infeasible to control the edge placement due to the unknown stochastic of the graph-changing process.

cs.LG↗

arXiv2022

Structure of Core-Periphery Communities

It has been experimentally shown that communities in social networks tend to have a core-periphery topology. However, there is still a limited understanding of the precise structure of core-periphery communities in social networks including the connectivity structure and interaction rates between agents. In this paper, we use a game-theoretic approach to derive a more precise characterization of the structure of core-periphery communities.

cs.SI↗

arXiv2020

Deep Learning System to Screen Coronavirus Disease 2019 Pneumonia

We found that the real time reverse transcription-polymerase chain reaction (RT-PCR) detection of viral RNA from sputum or nasopharyngeal swab has a relatively low positive rate in the early stage to determine COVID-19 (named by the World Health Organization). The manifestations of computed tomography (CT) imaging of COVID-19 had their own characteristics, which are different from other types of viral pneumonia, such as Influenza-A viral pneumonia. Therefore, clinical doctors call for another early diagnostic criteria for this new type of pneumonia as soon as possible.This study aimed to establish an early screening model to distinguish COVID-19 pneumonia from Influenza-A viral pneumonia and healthy cases with pulmonary CT images using deep learning techniques. The candidate infection regions were first segmented out using a 3-dimensional deep learning model from pulmonary CT image set. These separated images were then categorized into COVID-19, Influenza-A viral pneumonia and irrelevant to infection groups, together with the corresponding confidence scores using a location-attention classification model. Finally the infection type and total confidence score of this CT case were calculated with Noisy-or Bayesian function.The experiments result of benchmark dataset showed that the overall accuracy was 86.7 % from the perspective of CT cases as a whole.The deep learning models established in this study were effective for the early screening of COVID-19 patients and demonstrated to be a promising supplementary diagnostic method for frontline clinical doctors.

physics.med-ph↗