arXiv subjects

Junyi Li

Publications and source records attributed to Junyi Li.

At least 73 records · Page 4Linked to original sources

arXiv2025

A Survey on Long Text Modeling with Transformers

Modeling long texts has been an essential technique in the field of natural language processing (NLP). With the ever-growing number of long documents, it is important to develop effective modeling methods that can process and analyze such texts. However, long texts pose important research challenges for existing text models, with more complex semantics and special characteristics. In this paper, we provide an overview of the recent advances on long texts modeling based on Transformer models. Firstly, we introduce the formal definition of long text modeling. Then, as the core content, we discuss how to process long input to satisfy the length limitation and design improved Transformer architectures to effectively extend the maximum context length. Following this, we discuss how to adapt Transformer models to capture the special characteristics of long texts. Finally, we describe four typical applications involving long text modeling and conclude this paper with a discussion of future directions. Our survey intends to provide researchers with a synthesis and pointer to related work on long text modeling.

cs.CL↗

arXiv2025

LongReD: Mitigating Short-Text Degradation of Long-Context Large Language Models via Restoration Distillation

Large language models (LLMs) have gained extended context windows through scaling positional encodings and lightweight continual pre-training. However, this often leads to degraded performance on short-text tasks, while the reasons for this degradation remain insufficiently explored. In this work, we identify two primary factors contributing to this issue: distribution drift in hidden states and attention scores, and catastrophic forgetting during continual pre-training. To address these challenges, we propose Long Context Pre-training with Restoration Distillation (LongReD), a novel approach designed to mitigate short-text performance degradation through minimizing the distribution discrepancy between the extended and original models. Besides training on long texts, LongReD distills the hidden state of selected layers from the original model on short texts. Additionally, LongReD also introduces a short-to-long distillation, aligning the output distribution on short texts with that on long texts by leveraging skipped positional indices. Experiments on common text benchmarks demonstrate that LongReD effectively preserves the model's short-text performance while maintaining comparable or even better capacity to handle long texts than baselines. Our code is available at https://github.com/RUCAIBox/LongReD.

cs.CL↗

arXiv2025

TokBench: Evaluating Your Visual Tokenizer before Visual Generation

In this work, we reveal the limitations of visual tokenizers and VAEs in preserving fine-grained features, and propose a benchmark to evaluate reconstruction performance for two challenging visual contents: text and face. Visual tokenizers and VAEs have significantly advanced visual generation and multimodal modeling by providing more efficient compressed or quantized image representations. However, while helping production models reduce computational burdens, the information loss from image compression fundamentally limits the upper bound of visual generation quality. To evaluate this upper bound, we focus on assessing reconstructed text and facial features since they typically: 1) exist at smaller scales, 2) contain dense and rich textures, 3) are prone to collapse, and 4) are highly sensitive to human vision. We first collect and curate a diverse set of clear text and face images from existing datasets. Unlike approaches using VLM models, we employ established OCR and face recognition models for evaluation, ensuring accuracy while maintaining an exceptionally lightweight assessment process requiring just 2GB memory and 4 minutes to complete. Using our benchmark, we analyze text and face reconstruction quality across various scales for different image tokenizers and VAEs. Our results show modern visual tokenizers still struggle to preserve fine-grained features, especially at smaller scales. We further extend this evaluation framework to video, conducting comprehensive analysis of video tokenizers. Additionally, we demonstrate that traditional metrics fail to accurately reflect reconstruction performance for faces and text, while our proposed metrics serve as an effective complement.

cs.CV↗

arXiv2025

Incentivizing Dual Process Thinking for Efficient Large Language Model Reasoning

Large reasoning models (LRMs) have demonstrated strong performance on complex reasoning tasks, but often suffer from overthinking, generating redundant content regardless of task difficulty. Inspired by the dual process theory in cognitive science, we propose Adaptive Cognition Policy Optimization (ACPO), a reinforcement learning framework that enables LRMs to achieve efficient reasoning through adaptive cognitive allocation and dynamic system switch. ACPO incorporates two key components: (1) introducing system-aware reasoning tokens to explicitly represent the thinking modes thereby making the model's cognitive process transparent, and (2) integrating online difficulty estimation and token length budget to guide adaptive system switch and reasoning during reinforcement learning. To this end, we propose a two-stage training strategy. The first stage begins with supervised fine-tuning to cold start the model, enabling it to generate reasoning paths with explicit thinking modes. In the second stage, we apply ACPO to further enhance adaptive system switch for difficulty-aware reasoning. Experimental results demonstrate that ACPO effectively reduces redundant reasoning while adaptively adjusting cognitive allocation based on task complexity, achieving efficient hybrid reasoning.

cs.AI↗

arXiv2025

ManuSearch: Democratizing Deep Search in Large Language Models with a Transparent and Open Multi-Agent Framework

Recent advances in web-augmented large language models (LLMs) have exhibited strong performance in complex reasoning tasks, yet these capabilities are mostly locked in proprietary systems with opaque architectures. In this work, we propose \textbf{ManuSearch}, a transparent and modular multi-agent framework designed to democratize deep search for LLMs. ManuSearch decomposes the search and reasoning process into three collaborative agents: (1) a solution planning agent that iteratively formulates sub-queries, (2) an Internet search agent that retrieves relevant documents via real-time web search, and (3) a structured webpage reading agent that extracts key evidence from raw web content. To rigorously evaluate deep reasoning abilities, we introduce \textbf{ORION}, a challenging benchmark focused on open-web reasoning over long-tail entities, covering both English and Chinese. Experimental results show that ManuSearch substantially outperforms prior open-source baselines and even surpasses leading closed-source systems. Our work paves the way for reproducible, extensible research in open deep search systems. We release the data and code in https://github.com/RUCAIBox/ManuSearch

cs.CL↗

arXiv2025

Search-Based Interaction For Conversation Recommendation via Generative Reward Model Based Simulated User

Conversational recommendation systems (CRSs) use multi-turn interaction to capture user preferences and provide personalized recommendations. A fundamental challenge in CRSs lies in effectively understanding user preferences from conversations. User preferences can be multifaceted and complex, posing significant challenges for accurate recommendations even with access to abundant external knowledge. While interaction with users can clarify their true preferences, frequent user involvement can lead to a degraded user experience. To address this problem, we propose a generative reward model based simulated user, named GRSU, for automatic interaction with CRSs. The simulated user provides feedback to the items recommended by CRSs, enabling them to better capture intricate user preferences through multi-turn interaction. Inspired by generative reward models, we design two types of feedback actions for the simulated user: i.e., generative item scoring, which offers coarse-grained feedback, and attribute-based item critique, which provides fine-grained feedback. To ensure seamless integration, these feedback actions are unified into an instruction-based format, allowing the development of a unified simulated user via instruction tuning on synthesized data. With this simulated user, automatic multi-turn interaction with CRSs can be effectively conducted. Furthermore, to strike a balance between effectiveness and efficiency, we draw inspiration from the paradigm of reward-guided search in complex reasoning tasks and employ beam search for the interaction process. On top of this, we propose an efficient candidate ranking method to improve the recommendation results derived from interaction. Extensive experiments on public datasets demonstrate the effectiveness, efficiency, and transferability of our approach.

cs.IR↗

arXiv2025

MSNGO: multi-species protein function annotation based on 3D protein structure and network propagation

Motivation: In recent years, protein function prediction has broken through the bottleneck of sequence features, significantly improving prediction accuracy using high-precision protein structures predicted by AlphaFold2. While single-species protein function prediction methods have achieved remarkable success, multi-species protein function prediction methods are still in the stage of using PPI networks and sequence features. Providing effective cross-species label propagation for species with sparse protein annotations remains a challenging issue. To address this problem, we propose the MSNGO model, which integrates structural features and network propagation methods. Our validation shows that using structural features can significantly improve the accuracy of multi-species protein function prediction. Results: We employ graph representation learning techniques to extract amino acid representations from protein structure contact maps and train a structural model using a graph convolution pooling module to derive protein-level structural features. After incorporating the sequence features from ESM-2, we apply a network propagation algorithm to aggregate information and update node representations within a heterogeneous network. The results demonstrate that MSNGO outperforms previous multi-species protein function prediction methods that rely on sequence features and PPI networks. Availability: https://github.com/blingbell/MSNGO.

cs.LG↗

arXiv2025

Can Large Language Models Help Experimental Design for Causal Discovery?

Designing proper experiments and selecting optimal intervention targets is a longstanding problem in scientific or causal discovery. Identifying the underlying causal structure from observational data alone is inherently difficult. Obtaining interventional data, on the other hand, is crucial to causal discovery, yet it is usually expensive and time-consuming to gather sufficient interventional data to facilitate causal discovery. Previous approaches commonly utilize uncertainty or gradient signals to determine the intervention targets. However, numerical-based approaches may yield suboptimal results due to the inaccurate estimation of the guiding signals at the beginning when with limited interventional data. In this work, we investigate a different approach, whether we can leverage Large Language Models (LLMs) to assist with the intervention targeting in causal discovery by making use of the rich world knowledge about the experimental design in LLMs. Specifically, we present Large Language Model Guided Intervention Targeting (LeGIT) -- a robust framework that effectively incorporates LLMs to augment existing numerical approaches for the intervention targeting in causal discovery. Across 4 realistic benchmark scales, LeGIT demonstrates significant improvements and robustness over existing methods and even surpasses humans, which demonstrates the usefulness of LLMs in assisting with experimental design for scientific discovery.

cs.AI↗

arXiv2025

Holistically Guided Monte Carlo Tree Search for Intricate Information Seeking

In the era of vast digital information, the sheer volume and heterogeneity of available information present significant challenges for intricate information seeking. Users frequently face multistep web search tasks that involve navigating vast and varied data sources. This complexity demands every step remains comprehensive, accurate, and relevant. However, traditional search methods often struggle to balance the need for localized precision with the broader context required for holistic understanding, leaving critical facets of intricate queries underexplored. In this paper, we introduce an LLM-based search assistant that adopts a new information seeking paradigm with holistically guided Monte Carlo tree search (HG-MCTS). We reformulate the task as a progressive information collection process with a knowledge memory and unite an adaptive checklist with multi-perspective reward modeling in MCTS. The adaptive checklist provides explicit sub-goals to guide the MCTS process toward comprehensive coverage of complex user queries. Simultaneously, our multi-perspective reward modeling offers both exploration and retrieval rewards, along with progress feedback that tracks completed and remaining sub-goals, refining the checklist as the tree search progresses. By striking a balance between localized tree expansion and global guidance, HG-MCTS reduces redundancy in search paths and ensures that all crucial aspects of an intricate query are properly addressed. Extensive experiments on real-world intricate information seeking tasks demonstrate that HG-MCTS acquires thorough knowledge collections and delivers more accurate final responses compared with existing baselines.

cs.IR↗

arXiv2025

Think More, Hallucinate Less: Mitigating Hallucinations via Dual Process of Fast and Slow Thinking

Large language models (LLMs) demonstrate exceptional capabilities, yet still face the hallucination issue. Typical text generation approaches adopt an auto-regressive generation without deliberate reasoning, which often results in untrustworthy and factually inaccurate responses. In this paper, we propose HaluSearch, a novel framework that incorporates tree search-based algorithms (e.g. MCTS) to enable an explicit slow thinking generation process for mitigating hallucinations of LLMs during inference. Specifically, HaluSearch frames text generation as a step-by-step reasoning process, using a self-evaluation reward model to score each generation step and guide the tree search towards the most reliable generation pathway for fully exploiting the internal knowledge of LLMs. To balance efficiency and quality, we introduce a hierarchical thinking system switch mechanism inspired by the dual process theory in cognitive science, which dynamically alternates between fast and slow thinking modes at both the instance and step levels, adapting to the complexity of questions and reasoning states. We conduct extensive experiments on both English and Chinese datasets and the results show that our approach significantly outperforms baseline approaches.

cs.CL↗

arXiv2024

RAG-Star: Enhancing Deliberative Reasoning with Retrieval Augmented Verification and Refinement

Existing large language models (LLMs) show exceptional problem-solving capabilities but might struggle with complex reasoning tasks. Despite the successes of chain-of-thought and tree-based search methods, they mainly depend on the internal knowledge of LLMs to search over intermediate reasoning steps, limited to dealing with simple tasks involving fewer reasoning steps. In this paper, we propose \textbf{RAG-Star}, a novel RAG approach that integrates the retrieved information to guide the tree-based deliberative reasoning process that relies on the inherent knowledge of LLMs. By leveraging Monte Carlo Tree Search, RAG-Star iteratively plans intermediate sub-queries and answers for reasoning based on the LLM itself. To consolidate internal and external knowledge, we propose an retrieval-augmented verification that utilizes query- and answer-aware reward modeling to provide feedback for the inherent reasoning of LLMs. Our experiments involving Llama-3.1-8B-Instruct and GPT-4o demonstrate that RAG-Star significantly outperforms previous RAG and reasoning methods.

cs.CL↗

arXiv2024

REAR: A Relevance-Aware Retrieval-Augmented Framework for Open-Domain Question Answering

Considering the limited internal parametric knowledge, retrieval-augmented generation (RAG) has been widely used to extend the knowledge scope of large language models (LLMs). Despite the extensive efforts on RAG research, in existing methods, LLMs cannot precisely assess the relevance of retrieved documents, thus likely leading to misleading or even incorrect utilization of external knowledge (eg., retrieved documents). To address this issue, in this paper, we propose REAR, a RElevance-Aware Retrieval-augmented approach for open-domain question answering (QA). As the key motivation, we aim to enhance the self-awareness regarding the reliability of external knowledge for LLMs, so as to adaptively utilize external knowledge in RAG systems. Specially, we develop a novel architecture for LLM-based RAG systems, by incorporating a specially designed assessment module that precisely assesses the relevance of retrieved documents. Furthermore, we propose an improved training method based on bi-granularity relevance fusion and noise-resistant training. By combining the improvements in both architecture and training, our proposed REAR can better utilize external knowledge by effectively perceiving the relevance of retrieved documents. Experiments on four open-domain QA tasks show that REAR significantly outperforms previous a number of competitive RAG approaches. Our codes can be accessed at https://github.com/RUCAIBox/REAR.

cs.CL↗

arXiv2024

Exploring Context Window of Large Language Models via Decomposed Positional Vectors

Transformer-based large language models (LLMs) typically have a limited context window, resulting in significant performance degradation when processing text beyond the length of the context window. Extensive studies have been proposed to extend the context window and achieve length extrapolation of LLMs, but there is still a lack of in-depth interpretation of these approaches. In this study, we explore the positional information within and beyond the context window for deciphering the underlying mechanism of LLMs. By using a mean-based decomposition method, we disentangle positional vectors from hidden states of LLMs and analyze their formation and effect on attention. Furthermore, when texts exceed the context window, we analyze the change of positional vectors in two settings, i.e., direct extrapolation and context window extension. Based on our findings, we design two training-free context window extension methods, positional vector replacement and attention window extension. Experimental results show that our methods can effectively extend the context window length.

cs.CL↗

arXiv2024

Energy Extraction from a Kerr Black Hole via Magnetic Reconnection within the Plunging Region

Magnetic reconnection within a highly magnetized plasma has been seen as a viable mechanism to extract the energy from a rotating black hole, as it can generate negative energy plasmoids in the ergoregion. For a typical accreting black hole, the ergoregion is filled with bulk plasma plunging from the innermost-stable-circular orbit (ISCO). In this study, we present an analytical study of the energy extraction via magnetic reconnection process in the plunging region. In contrast to the toroidal plasma, where the magnetic field cannot be derived from the MHD scheme, the magnetic field in the plunging plasma was determined by the ideal-MHD condition. We derive the global magnetic field structure in a fast reconnection model, and we read the expressions for the energies of plasmoids ejected from the reconnection region, for general stationary and axisymmetric spacetimes. Then, we demonstrate the behaviors of ejected energies varying with the reconnection locations in the Kerr spacetime, and identify the region where a negative-energy plasmoid can be produced. We find that for a certain magnetization there exists a critical value of the black hole spin, beyond which the energy extraction can occur, and the energy extraction is most efficient for the near-extreme black hole. Moreover, we study the conditions necessary for a plasmoid with positive energy to escape to the infinity, a crucial requirement for effective energy extractions. Considering the escaping conditions, we provide the parameter space in the radius-spin plane in which the energy extraction mechanism is effective.

gr-qc↗

arXiv2024

Provably Faster Algorithms for Bilevel Optimization via Without-Replacement Sampling

Bilevel Optimization has experienced significant advancements recently with the introduction of new efficient algorithms. Mirroring the success in single-level optimization, stochastic gradient-based algorithms are widely used in bilevel optimization. However, a common limitation in these algorithms is the presumption of independent sampling, which can lead to increased computational costs due to the complicated hyper-gradient formulation of bilevel problems. To address this challenge, we study the example-selection strategy for bilevel optimization in this work. More specifically, we introduce a without-replacement sampling based algorithm which achieves a faster convergence rate compared to its counterparts that rely on independent sampling. Beyond the standard bilevel optimization formulation, we extend our discussion to conditional bilevel optimization and also two special cases: minimax and compositional optimization. Finally, we validate our algorithms over both synthetic and real-world applications. Numerical results clearly showcase the superiority of our algorithms.

math.OC↗

arXiv2024

From Darcy flow to convective flow: pore-scale study of density-driven currents in porous media

We conducted a series of pore-scale numerical simulations on convective flow in porous media, with a fixed Schmidt number of 400 and a wide range of Rayleigh numbers. The porous media are modeled using regularly arranged square obstacles in a Rayleigh-Bénard (RB) system. As the Rayleigh number increases, the flow transitions from a Darcy-type regime to an RB-type regime, with the corresponding $Sh-Ra_D$ relationship shifting from sublinear scaling to the classical 0.3 scaling of RB convection. Here, $Sh$ and $Ra_D$ represent the Sherwood number and Rayleigh-Darcy number, respectively. For different porosities, the transition begins at approximately $Ra_D = 4000$, at which point the characteristic horizontal scale of the flow field is comparable to the size of a single obstacle unit. When the thickness of the concentration boundary layer is less than about one-sixth of the pore spacing, the flow finally enters the RB regime. In the Darcy regime, the scaling exponent of $Sh$ and $Ra_D$ decreases as porosity increases. Based on the Grossman-Lohse theory (J. Fluid Mech., vol. 407, 2000; Phys. Rev. Lett., vol. 86, 2001), we provide an explanation for the scaling laws in each regime and highlight the significant impact of mechanical dispersion effects within the boundary layer. Our findings provide some new insights into the validity range of the Darcy model.

physics.flu-dyn↗

arXiv2024

PartGLEE: A Foundation Model for Recognizing and Parsing Any Objects

We present PartGLEE, a part-level foundation model for locating and identifying both objects and parts in images. Through a unified framework, PartGLEE accomplishes detection, segmentation, and grounding of instances at any granularity in the open world scenario. Specifically, we propose a Q-Former to construct the hierarchical relationship between objects and parts, parsing every object into corresponding semantic parts. By incorporating a large amount of object-level data, the hierarchical relationships can be extended, enabling PartGLEE to recognize a rich variety of parts. We conduct comprehensive studies to validate the effectiveness of our method, PartGLEE achieves the state-of-the-art performance across various part-level tasks and obtain competitive results on object-level tasks. The proposed PartGLEE significantly enhances hierarchical modeling capabilities and part-level perception over our previous GLEE model. Further analysis indicates that the hierarchical cognitive ability of PartGLEE is able to facilitate a detailed comprehension in images for mLLMs. The model and code will be released at https://provencestar.github.io/PartGLEE-Vision/ .

cs.CV↗

arXiv2024

Mix-CPT: A Domain Adaptation Framework via Decoupling Knowledge Learning and Format Alignment

Adapting general large language models (LLMs) to specialized domains presents great challenges due to varied data distributions. This adaptation typically requires continual pre-training on massive domain-specific corpora to facilitate knowledge memorization, followed by training to apply this knowledge following human instructions and preferences. However, this method may result in inefficient knowledge memorization due to a lack of awareness of knowledge utilization and imposes substantial demands on LLMs to simultaneously learn knowledge utilization and format alignment with limited training samples. To facilitate the domain adaptation of LLM, we revise this process and propose a new domain adaptation framework including domain knowledge learning and general format alignment, called Mix-CPT. Specifically, we first conduct a knowledge mixture continual pre-training that concurrently focuses on knowledge memorization and utilization, allowing for mutual reinforcement. To avoid catastrophic forgetting during the continual pre-training process, we further incorporate a logit swap self-distillation constraint. Subsequently, leveraging the knowledge and capabilities acquired during continual pre-training, we efficiently perform instruction tuning and alignment with a few general training samples to achieve format alignment. Extensive experiments demonstrate that our proposed Mix-CPT framework can simultaneously improve the task-solving capabilities of LLMs on the target and general domains compared to the traditional adaptation methods.

cs.CL↗