arXiv subjects

K. B. Blyuss

Publications and source records attributed to K. B. Blyuss.

36 records · Page 2Linked to original sources

arXiv2015

Time-delayed models of gene regulatory networks

In this review we discuss different mathematical models of gene regulatory networks as relevant to the onset and development of cancer. After discussion of alternative modelling approaches, we use a paradigmatic two-gene network to focus on the role played by time delays in the dynamics of gene regulatory networks. We contrast the dynamics of the reduced model arising in the limit of fast mRNA dynamics with that of the full model. The review concludes with the discussion of some open problems.

q-bio.MN↗

arXiv2014

Synchronization of networks of oscillators with distributed delay coupling

This paper studies the stability of synchronized states in networks where couplings between nodes are characterized by some distributed time delay, and develops a generalized master stability function approach. Using a generic example of Stuart-Landau oscillators, it is shown how the stability of synchronized solutions in networks with distributed delay coupling can be determined through a semi-analytic computation of Floquet exponents. The analysis of stability of fully synchronized and of cluster or splay states is illustrated for several practically important choices of delay distributions and network topologies.

nlin.CD↗

arXiv2013

Analysis of symmetries in models of multi-strain infections

In mathematical studies of the dynamics of multi-strain diseases caused by antigenically diverse pathogens, there is a substantial interest in analytical insights. Using the example of a generic model of multi-strain diseases with cross-immunity between strains, we show that a significant understanding of the stability of steady states and possible dynamical behaviours can be achieved when the symmetry of interactions between strains is taken into account. Techniques of equivariant bifurcation theory allow one to identify the type of possible symmetry-breaking Hopf bifurcation, as well as to classify different periodic solutions in terms of their spatial and temporal symmetries. The approach is also illustrated on other models of multi-strain diseases, where the same methodology provides a systematic understanding of bifurcation scenarios and periodic behaviours. The results of the analysis are quite generic, and have wider implications for understanding the dynamics of a large class of models of multi-strain diseases.

nlin.CD↗

arXiv2013

Time delay control of symmetry-breaking primary and secondary oscillation death

We show that oscillation death as a specific type of oscillation suppression, which implies symmetry breaking, can be controlled by introducing time-delayed coupling. In particular, we demonstrate that time delay influences the stability of an inhomogeneous steady state, providing the opportunity to modulate the threshold for oscillation death. Additionally, we find a novel type of oscillation death representing a secondary bifurcation of an inhomogeneous steady state.

nlin.CD↗

arXiv2012

Symmetry breaking in a model of antigenic variation with immune delay

Effects of immune delay on symmetric dynamics are investigated within a model of antigenic variation in malaria. Using isotypic decomposition of the phase space, stability problem is reduced to the analysis of a cubic transcendental equation for the eigenvalues. This allows one to identify periodic solutions with different symmetries arising at a Hopf bifurcation. In the case of small immune delay, the boundary of the Hopf bifurcation is found in a closed form in terms of system parameters. For arbitrary values of the time delay, general expressions for the critical time delay are found, which indicate bifurcation to an odd or even periodic solution. Numerical simulations of the full system are performed to illustrate different types of dynamical behaviour. The results of this analysis are quite generic and can be used to study within-host dynamics of many infectious diseases.

nlin.CD↗

arXiv2012

The role of tunable activation thresholds in the dynamics of autoimmunity

It has been known for some time that human autoimmune diseases can be triggered by viral infections. Several possible mechanisms of interactions between a virus and immune system have been analysed, with a prevailing opinion being that the onset of autoimmunity can in many cases be attributed to "molecular mimicry", where linear peptide epitopes, processed from viral proteins, mimic normal host self proteins, thus leading to a cross-reaction of immune response against virus with host cells. In this paper we present a mathematical model for the dynamics of an immune response to a viral infection and autoimmunity, which takes into account T cells with different activation thresholds. We show how the infection can be cleared by the immune system, as well as how it can lead to a chronic infection or recurrent infection with relapses and remissions. Numerical simulations of the model are performed to illustrate various dynamical regimes, as well as to analyse the potential impact of treatment of autoimmune disease in the chronic and recurrent states. The results provide good qualitative agreement with available data on immune responses to viral infections and progression of autoimmune diseases.

q-bio.PE↗

arXiv2012

Amplitude and phase dynamics in oscillators with distributed-delay coupling

This paper studies the effects of distributed delay coupling on the dynamics in a system of non-identical coupled Stuart-Landau oscillators. For uniform and gamma delay distribution kernels, conditions for amplitude death are obtained in terms of average frequency, frequency detuning and parameters of the coupling, including coupling strength and phase, as well as the mean time delay and the width of the delay distribution. To gain further insight into the dynamics inside amplitude death regions, eigenvalues of the corresponding characteristic equations are computed numerically. Oscillatory dynamics of the system is also investigated using amplitude and phase representation. Various branches of phase-locked solutions are identified, and their stability is analysed for different types of delay distributions.

nlin.CD↗

arXiv2012

The effects of symmetry on the dynamics of antigenic variation

In the studies of dynamics of pathogens and their interactions with a host immune system, an important role is played by the structure of antigenic variants associated with a pathogen. Using the example of a model of antigenic variation in malaria, we show how many of the observed dynamical regimes can be explained in terms of the symmetry of interactions between different antigenic variants. The results of this analysis are quite generic, and have wider implications for understanding the dynamics of immune escape of other parasites, as well as for the dynamics of multi-strain diseases.

nlin.CD↗

arXiv2012

Amplitude death in systems of coupled oscillators with distributed-delay coupling

This paper studies the effects of coupling with distributed delay on the suppression of oscillations in a system of coupled Stuart-Landau oscillators. Conditions for amplitude death are obtained in terms of strength and phase of the coupling, as well as the mean time delay and the width of the delay distribution for uniform and gamma distributions. Analytical results are confirmed by numerical computation of the eigenvalues of the corresponding characteristic equations. These results indicate that larger widths of delay distribution increase the regions of amplitude death in the parameter space. In the case of a uniformly distributed delay kernel, for sufficiently large width of the delay distribution it is possible to achieve amplitude death for an arbitrary value of the average time delay, provided that the coupling strength has a value in the appropriate range. For a gamma distribution of delay, amplitude death is also possible for an arbitrary value of the average time delay, provided that it exceeds a certain value as determined by the coupling phase and the power law of the distribution. The coupling phase has a destabilizing effect and reduces the regions of amplitude death.

nlin.CD↗

arXiv2012

Control of spatiotemporal patterns in the Gray-Scott model

This paper studies the effects of a time-delayed feedback control on the appearance and development of spatiotemporal patterns in a reaction-diffusion system. Different types of control schemes are investigated, including single-species, diagonal, and mixed control. This approach helps to unveil different dynamical regimes, which arise from chaotic state or from traveling waves. In the case of spatiotemporal chaos, the control can either stabilize uniform steady states or lead to bistability between a trivial steady state and a propagating traveling wave. Furthermore, when the basic state is a stable traveling pulse, the control is able to advance stationary Turing patterns or yield the above-mentioned bistability regime. In each case, the stability boundary is found in the parameter space of the control strength and the time delay, and numerical simulations suggest that diagonal control fails to control the spatiotemporal chaos.

nlin.CD↗

arXiv2012

Asymptotic properties of the spectrum of neutral delay differential equations

Spectral properties and transition to instability in neutral delay differential equations are investigated in the limit of large delay. An approximation of the upper boundary of stability is found and compared to an analytically derived exact stability boundary. The approximate and exact stability borders agree quite well for the large time delay, and the inclusion of a time-delayed velocity feedback improves this agreement for small delays. Theoretical results are complemented by a numerically computed spectrum of the corresponding characteristic equations.

nlin.CD↗

arXiv2012

Control of unstable steady states in neutral time-delayed systems

We present an analysis of time-delayed feedback control used to stabilize an unstable steady state of a neutral delay differential equation. Stability of the controlled system is addressed by studying the eigenvalue spectrum of a corresponding characteristic equation with two time delays. An analytic expression for the stabilizing control strength is derived in terms of original system parameters and the time delay of the control. Theoretical and numerical results show that the interplay between the control strength and two time delays provides a number of regions in the parameter space where the time-delayed feedback control can successfully stabilize an otherwise unstable steady state.

nlin.CD↗

arXiv2012

Stability and bifurcations in a model of antigenic variation in malaria

We examine the properties of a recently proposed model for antigenic variation in malaria which incorporates multiple epitopes and both long-lasting and transient immune responses. We show that in the case of a vanishing decay rate for the long-lasting immune response, the system exhibits the so-called "bifurcations without parameters" due to the existence of a hypersurface of equilibria in the phase space. When the decay rate of the long-lasting immune response is different from zero, the hypersurface of equilibria degenerates, and a multitude of other steady states are born, many of which are related by a permutation symmetry of the system. The robustness of the fully symmetric state of the system was investigated by means of numerical computation of transverse Lyapunov exponents. The results of this exercise indicate that for a vanishing decay of long-lasting immune response, the fully symmetric state is not robust in the substantial part of the parameter space, and instead all variants develop their own temporal dynamics contributing to the overall time evolution. At the same time, if the decay rate of the long-lasting immune response is increased, the fully symmetric state can become robust provided the growth rate of the long-lasting immune response is rapid.

nlin.CD↗

arXiv2012

Stability and bifurcations in an epidemic model with varying immunity period

An epidemic model with distributed time delay is derived to describe the dynamics of infectious diseases with varying immunity. It is shown that solutions are always positive, and the model has at most two steady states: disease-free and endemic. It is proved that the disease-free equilibrium is locally and globally asymptotically stable. When an endemic equilibrium exists, it is possible to analytically prove its local and global stability using Lyapunov functionals. Bifurcation analysis is performed using DDE-BIFTOOL and traceDDE to investigate different dynamical regimes in the model using numerical continuation for different values of system parameters and different integral kernels.

nlin.CD↗

arXiv2002

Transverse instability and its long-term development for solitary waves of the (2+1)-Boussinesq equation

The stability properties of line solitary wave solutions of the (2+1)-dimensional Boussinesq equation with respect to transverse perturbations and their consequences are considered. A geometric condition arising from a multi-symplectic formulation of this equation gives an explicit relation between the parameters for transverse instability when the transverse wavenumber is small. The Evans function is then computed explicitly, giving the eigenvalues for transverse instability for all transverse wavenumbers. To determine the nonlinear and long time implications of transverse instability, numerical simulations are performed using pseudospectral discretization. The numerics confirm the analytic results, and in all cases studied, transverse instability leads to collapse.

nlin.CD↗

arXiv2002

Melnikov analysis for multi-symplectic PDEs

In this work the Melnikov method for perturbed Hamiltonian wave equations is considered in order to determine possible chaotic behaviour in the systems. The backbone of the analysis is the multi-symplectic formulation of the unperturbed PDE and its further reduction to travelling waves. In the multi-symplectic approach two separate symplectic operators are introduced for the spatial and temporal variables, which allow one to generalise the usual symplectic structure. The systems under consideration include perturbations of generalised KdV equation, nonlinear wave equation, Boussinesq equation. These equations are equivariant with respect to abelian subgroups of Euclidean group. It is assumed that the external perturbation preserves this symmetry. Travelling wave reduction for the above-mentioned systems results in a four-dimensional system of ODEs, which is considered for Melnikov type chaos. As a preliminary for the calculation of a Melnikov function, we prove the persistence of a fixed point for the perturbed Poincare map by using Lyapunov-Schmidt reduction. The framework sketched will be applied to the analysis of possible chaotic behaviour of travelling wave solutions for the above-mentioned PDEs within the multi-symplectic approach.

nlin.CD↗

arXiv2002

Chaotic behaviour of the solutions to a perturbed Korteweg-de Vries equation

Stationary wave solutions of the perturbed Korteweg-de Vries equation are considered in the presence of external hamiltonian perturbations. Conditions of their chaotic behaviour are studied with the help of Melnikov theory. For the homoclinic chaos Poincaré sections are constructed to demonstrate the complicated behaviour, and Lyapunov exponents are also numerically calculated.

nlin.CD↗

arXiv2000

Chaotic behaviour of nonlinear waves and solitons of perturbed Korteweg - de Vries equation

This paper considers properties of nonlinear waves and solitons of Korteweg-de Vries equation in the presence of external perturbation. For time-periodic hamiltonian perturbation the width of the stochastic layer is calculated. The conclusions about chaotic behaviour in long-period waves and solitons are inferred. Obtained theoretical results find experimental confirmation in experiments with the propagation of ion-acoustic waves in plasma.

patt-sol↗