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Kai Yang

Publications and source records attributed to Kai Yang.

At least 163 records · Page 9Linked to original sources

Provably Convergent Federated Trilevel Learning

Trilevel learning, also called trilevel optimization (TLO), has been recognized as a powerful modelling tool for hierarchical decision process and widely applied in many machine learning applications, such as robust neural architecture search, hyperparameter optimization, and domain adaptation. Tackling TLO problems has presented a great challenge due to their nested decision-making structure. In addition, existing works on TLO face the following key challenges: 1) they all focus on the non-distributed setting, which may lead to privacy breach; 2) they do not offer any non-asymptotic convergence analysis which characterizes how fast an algorithm converges. To address the aforementioned challenges, this paper proposes an asynchronous federated trilevel optimization method to solve TLO problems. The proposed method utilizes $μ$-cuts to construct a hyper-polyhedral approximation for the TLO problem and solve it in an asynchronous manner. We demonstrate that the proposed $μ$-cuts are applicable to not only convex functions but also a wide range of non-convex functions that meet the $μ$-weakly convex assumption. Furthermore, we theoretically analyze the non-asymptotic convergence rate for the proposed method by showing its iteration complexity to obtain $ε$-stationary point is upper bounded by $\mathcal{O}(\frac{1}{ε^2})$. Extensive experiments on real-world datasets have been conducted to elucidate the superiority of the proposed method, e.g., it has a faster convergence rate with a maximum acceleration of approximately 80$\%$.

cs.LG↗

Robust Beamforming for Downlink Multi-Cell Systems: A Bilevel Optimization Perspective

Utilization of inter-base station cooperation for information processing has shown great potential in enhancing the overall quality of communication services (QoS) in wireless communication networks. Nevertheless, such cooperations require the knowledge of channel state information (CSI) at base stations (BSs), which is assumed to be perfectly known. However, CSI errors are inevitable in practice which necessitates beamforming techniques that can achieve robust performance in the presence of channel estimation errors. Existing approaches relax the robust beamforming design problems into semidefinite programming (SDP), which can only achieve a solution that is far from being optimal. To this end, this paper views robust beamforming design problems from a bilevel optimization perspective. In particular, we focus on maximizing the worst-case weighted sum-rate (WSR) in the downlink multi-cell multi-user multiple-input single-output (MISO) system considering bounded CSI errors. We first reformulate this problem into a bilevel optimization problem and then develop an efficient algorithm based on the cutting plane method. A distributed optimization algorithm has also been developed to facilitate the parallel processing in practical settings. Numerical results are provided to confirm the effectiveness of the proposed algorithm in terms of performance and complexity, particularly in the presence of CSI uncertainties.

cs.IT↗

Surveys of clumps, cores, and condensations in Cygnus-X:Searching for circumstellar disks

To investigate whether disk-mediated accretion is the primary mechanism in high-mass star formation, we have established a survey of a large sample of massive dense cores within a giant molecular cloud. We used high angular resolution ($\sim 1.8''$) observations with SMA to study the dust emission and molecular line emission of about 50 massive dense cores in Cygnus-X. At a typical distance of 1.4 kpc for Cygnus-X, these massive dense cores are resolved into $\sim 2000$ au condensations. We combined the CO outflow emission and gas kinematics traced by several high-density tracers to search for disk candidates. We extracted hundreds of dust condensations from the SMA 1.3 mm dust continuum emission. The CO data show bipolar or unipolar outflow signatures toward 49 dust condensations. Among them, only 27 sources are detected in dense gas tracers, which reveals the gas kinematics, and nine sources show evidence of rotating envelopes, suggesting the existence of embedded accretion disks. The position-velocity diagrams along the velocity gradient of all rotating condensations suggest that four condensations are possible to host Keplerian-like disks. A detailed investigation of the 27 sources detected in dense gas tracers suggests that the nine disk candidates are at earlier evolutionary stages compared to the remaining 18 sources. Non-detection of rotating disks in our sample may be due to several factors, including an unknown inclination angle of the rotation axis and an early evolutionary stage of the central source, and the latter could be important, considering that young and powerful outflows could confuse the observational evidence for rotation. The detection rate of disk candidates in our sample is 1/3, which confirms that disk accretion is a viable mechanism for high-mass star formation, although it may not be the only one.

astro-ph.GA↗

Molecular deuterations in massive Starless Clump Candidates

Deuterated molecules are valuable probes for investigating the evolution and the kinematics in the earliest stages of star formation. In this study, we conduct a comprehensive investigation by performing a single point survey of 101 starless clump candidates, and carrying out on-the-fly (OTF) observations of 11 selected sources, focusing on deuterated molecular lines using the IRAM 30-m telescope. In the single-point observation, we make 46 detections for DCO$^{+}$ J=1$-$0, 12 for DCN J=1$-$0, 51 for DNC J=1$-$0, 7 for N$_{2}$D$^{+}$ J=1$-$0, 20 for DCO$^{+}$ J=2$-$1, and 10 for DCN J=2$-$1. The starless clump candidates (SCCs) with deuterated molecule detections exhibit lower median kinetic temperatures and narrower H$_{2}$CO (1$_{(0,1)}$$-$0$_{(0,0)}$) median full width at half maximum (FWHM) compared to those without such detections, while simultaneously displaying similar median values of 1.1mm intensity, mass, and distance. Furthermore, our OTF observations reveal that deuterated molecules predominantly have peaks near the 1.1mm continuum peaks, with the DCO$^{+}$ J=1$-$0 emission demonstrating higher intensity in the deuterated peak region compared to the DCN and DNC J=1$-$0 emissions. Additionally, the majority of emissions from deuterated molecules and $^{13}$C$-$isotopologues exhibit peak positions close to those of the 1.1mm continuum peaks. By analyzing the 20"$\times$20" regions with strongest deuterated emissions in the OTF observations, we estimated deuterated abundances of 0.004$-$0.045, 0.011$-$0.040, and 0.004$-$0.038 for D$_{\rm frac}$(HCN), D$_{\rm frac}$(HCO$^{+}$), and D$_{\rm frac}$(HNC), respectively. The differential detection of deuterated molecular lines in our OTF observations could be attributed to variations in critical densities and formation pathways.

astro-ph.GA↗

Surveys of clumps, cores, and condensations in Cygnus-X: SMA observations of SiO (5$-$4)

The SiO emissions are usually used to trace high-velocity outflow shocks in star-forming regions. However, several studies have found low-velocity and widespread SiO emissions not associated with outflows in molecular clouds. We aim to detect and characterize the SiO emissions in massive dense cores (MDCs), and explore the properties of the central sources of SiO emission. We present high-angular-resolution ($\sim$1.5$^{\prime\prime}$) observations of the SiO (5$-$4) line made with the Submillimeter Array towards a sample of 48 MDCs in the Cygnus-X star-forming complex. We studied the SiO emission structures, including their morphologies, kinematics, and energetics, and investigated their relationship with the evolution of the central sources. The SiO (5$-$4) emission is detected in 16 out of 48 MDCs. We identify 14 bipolar and 18 unipolar SiO (5$-$4) outflows associated with 29 dust condensations. Most outflows (24 out of 32) are associated with excess Spitzer 4.5 $μ$m emissions. We also find diffuse low-velocity ($Δ{v}$ $\le$ 1.2 km s$^{-1}$) SiO (5$-$4) emission closely surrounding the dust condensations in two MDCs, and suggest that it may originate from decelerated outflow shocks or large-scale shocks from global cloud collapse. We find that the SMA SiO (5$-$4) emission in MDCs is mostly associated with outflows. Probably due to the relatively high excitation of SiO (5$-$4) compared to SiO (2$-$1) and due to the spatial filtering effect, we do not detect large-scale low-velocity SiO (5$-$4) emission, but detect more compact low-velocity emission in close proximity to the dust condensations. We group the sources into different evolutionary stages based on the infrared emission, radio continuum emission, and gas temperature properties of the outflow central sources, and find that the 24 $μ$m luminosity tends to increase with evolution.

astro-ph.GA↗

Design and trajectory tracking control of CuRobot: A Cubic Reversible Robot

In field environments, numerous robots necessitate manual intervention for restoration of functionality post a turnover, resulting in diminished operational efficiency. This study presents an innovative design solution for a reversible omnidirectional mobile robot denoted as CuRobot, featuring a cube structure, thereby facilitating uninterrupted omnidirectional movement even in the event of flipping. The incorporation of eight conical wheels at the cube vertices ensures consistent omnidirectional motion no matter which face of the cube contacts the ground. Additionally, a kinematic model is formulated for CuRobot, accompanied by the development of a trajectory tracking controller utilizing model predictive control. Through simulation experiments, the correlation between trajectory tracking accuracy and the robot's motion direction is examined. Furthermore, the robot's proficiency in omnidirectional mobility and sustained movement post-flipping is substantiated via both simulation and prototype experiments. This design reduces the inefficiencies associated with manual intervention, thereby increasing the operational robustness of robots in field environments.

cs.RO↗

Spatial distribution of NH2D in massive star-forming regions

To understand the relation between NH$_2$D and its physical environment, we mapped ortho-NH$_2$D $1_{11}^s-1_{01}^a$ at 85.9 GHz toward 24 Galactic late-stage massive star-forming regions with Institut de Radioastronomie Millim$ é$trique (IRAM) 30-m telescope. Ortho-NH$_2$D $1_{11}^s-1_{01}^a$ was detected in 18 of 24 sources. Comparing with the distribution of H$^{13}$CN 1-0 as a dense gas tracer and radio recombination line H42$α$, ortho-NH$_2$D $1_{11}^s-1_{01}^a$ present complex and diverse spatial distribution in these targets. 11 of the 18 targets, present a different distribution between ortho-NH$_2$D $1_{11}^s-1_{01}^a$ and H$^{13}$CN 1-0, while no significant difference between these two lines can be found in the other 7 sources, mainly due to limited spatial resolution and sensitivity. Moreover, with H42$α$ tracing massive young stellar objects, ortho-NH$_2$D $1_{11}^s-1_{01}^a$ seems to show a relatively weak emission near the massive young stellar objects.

astro-ph.GA↗

Structure design and coordinated motion analysis of bionic crocodile robot

Crocodiles, known as one of the oldest and most resilient species on Earth, have demonstrated remarkable locomotor abilities both on land and in water, evolving over millennia to adapt to diverse environments. In this paper, we draw inspiration from crocodiles and introduce a highly biomimetic crocodile robot equipped with multiple degrees of freedom and articulated trunk joints. This design is based on a comprehensive analysis of the structural and motion characteristics observed in real crocodiles. The bionic crocodile robot has the problem of limb-torso incoordination during movement, in order to solve this problem, we apply the D-H method for both forward and inverse kinematics analysis of the robot's legs and spine. Through a series of simulation experiments, we investigate the robot's stability of motion, fault tolerance, and adaptability to the environment in two motor pattern: with and without the involvement of the spine and tail in its movements. Experiment results demonstrate that the bionic crocodile robot exhibits superior motion performance when the spine and tail cooperate with the extremities. This research not only showcases the potential of biomimicry in robotics but also underscores the significance of understanding how nature's designs can inform and enhance our technological innovations.

cs.RO↗

Towards Unified AI Drug Discovery with Multiple Knowledge Modalities

In recent years, AI models that mine intrinsic patterns from molecular structures and protein sequences have shown promise in accelerating drug discovery. However, these methods partly lag behind real-world pharmaceutical approaches of human experts that additionally grasp structured knowledge from knowledge bases and unstructured knowledge from biomedical literature. To bridge this gap, we propose KEDD, a unified, end-to-end, and multimodal deep learning framework that optimally incorporates both structured and unstructured knowledge for vast AI drug discovery tasks. The framework first extracts underlying characteristics from heterogeneous inputs, and then applies multimodal fusion for accurate prediction. To mitigate the problem of missing modalities, we leverage multi-head sparse attention and a modality masking mechanism to extract relevant information robustly. Benefiting from integrated knowledge, our framework achieves a deeper understanding of molecule entities, brings significant improvements over state-of-the-art methods on a wide range of tasks and benchmarks, and reveals its promising potential in assisting real-world drug discovery.

cs.LG↗

ASM: Adaptive Skinning Model for High-Quality 3D Face Modeling

The research fields of parametric face model and 3D face reconstruction have been extensively studied. However, a critical question remains unanswered: how to tailor the face model for specific reconstruction settings. We argue that reconstruction with multi-view uncalibrated images demands a new model with stronger capacity. Our study shifts attention from data-dependent 3D Morphable Models (3DMM) to an understudied human-designed skinning model. We propose Adaptive Skinning Model (ASM), which redefines the skinning model with more compact and fully tunable parameters. With extensive experiments, we demonstrate that ASM achieves significantly improved capacity than 3DMM, with the additional advantage of model size and easy implementation for new topology. We achieve state-of-the-art performance with ASM for multi-view reconstruction on the Florence MICC Coop benchmark. Our quantitative analysis demonstrates the importance of a high-capacity model for fully exploiting abundant information from multi-view input in reconstruction. Furthermore, our model with physical-semantic parameters can be directly utilized for real-world applications, such as in-game avatar creation. As a result, our work opens up new research direction for parametric face model and facilitates future research on multi-view reconstruction.

cs.CV↗

When Automated Assessment Meets Automated Content Generation: Examining Text Quality in the Era of GPTs

The use of machine learning (ML) models to assess and score textual data has become increasingly pervasive in an array of contexts including natural language processing, information retrieval, search and recommendation, and credibility assessment of online content. A significant disruption at the intersection of ML and text are text-generating large-language models such as generative pre-trained transformers (GPTs). We empirically assess the differences in how ML-based scoring models trained on human content assess the quality of content generated by humans versus GPTs. To do so, we propose an analysis framework that encompasses essay scoring ML-models, human and ML-generated essays, and a statistical model that parsimoniously considers the impact of type of respondent, prompt genre, and the ML model used for assessment model. A rich testbed is utilized that encompasses 18,460 human-generated and GPT-based essays. Results of our benchmark analysis reveal that transformer pretrained language models (PLMs) more accurately score human essay quality as compared to CNN/RNN and feature-based ML methods. Interestingly, we find that the transformer PLMs tend to score GPT-generated text 10-15\% higher on average, relative to human-authored documents. Conversely, traditional deep learning and feature-based ML models score human text considerably higher. Further analysis reveals that although the transformer PLMs are exclusively fine-tuned on human text, they more prominently attend to certain tokens appearing only in GPT-generated text, possibly due to familiarity/overlap in pre-training. Our framework and results have implications for text classification settings where automated scoring of text is likely to be disrupted by generative AI.

cs.CL↗

Lightning-Fast Dual-Layer Lossless Coding for Radiance Format High Dynamic Range Images

This paper proposes a fast dual-layer lossless coding for high dynamic range images (HDRIs) in the Radiance format. The coding, which consists of a base layer and a lossless enhancement layer, provides a standard dynamic range image (SDRI) without requiring an additional algorithm at the decoder and can losslessly decode the HDRI by adding the residual signals (residuals) between the HDRI and SDRI to the SDRI, if desired. To suppress the dynamic range of the residuals in the enhancement layer, the coding directly uses the mantissa and exponent information from the Radiance format. To further reduce the residual energy, each mantissa is modeled (estimated) as a linear function, i.e., a simple linear regression, of the encoded-decoded SDRI in each region with the same exponent. This is called simple linear regressive mantissa estimator. Experimental results show that, compared with existing methods, our coding reduces the average bitrate by approximately $1.57$-$6.68$ % and significantly reduces the average encoder implementation time by approximately $87.13$-$98.96$ %.

eess.IV↗

Diagonally Reconstructed Channel Estimation for MIMO-AFDM with Inter-Doppler Interference in Doubly Selective Channels

On the heels of orthogonal time frequency space (OTFS) modulation, the recently discovered affine frequency division multiplexing (AFDM) is a promising waveform for the sixth-generation wireless network. In this paper, we study the widely-used embedded pilot-aided (EPA) channel estimation in multiple-input multiple-output AFDM (MIMO-AFDM) system with fractional Doppler shifts. We first formulate the vectorized input-output relationship of MIMO-AFDM, and theoretically prove that MIMO-AFDM can achieve full diversity in doubly selective channels. Then we illustrate the implementation of EPA channel estimation in MIMO-AFDM and unveil that serious inter-Doppler interference (IDoI) occurs if we try to estimate the channel gain, delay shift, and Doppler shift of each propagation path. To address this issue, the diagonal reconstructability of AFDM subchannel matrix is studied and a low-complexity embedded pilot-aided diagonal reconstruction (EPA-DR) channel estimation scheme is proposed. The EPA-DR scheme calculates the AFDM effective channel matrix directly without estimating the three channel parameters, eliminating the severe IDoI inherently. Since the effective channel matrix is necessary for MIMO-AFDM receive processing, we believe this is an important step to bring AFDM towards practical communication systems. Finally, we investigate the orthogonal resource allocation of affine frequency division multiple access (AFDMA) system. Simulation results validate the effectiveness of the proposed EPA-DR scheme.

cs.IT↗

BioMedGPT: Open Multimodal Generative Pre-trained Transformer for BioMedicine

Foundation models (FMs) have exhibited remarkable performance across a wide range of downstream tasks in many domains. Nevertheless, general-purpose FMs often face challenges when confronted with domain-specific problems, due to their limited access to the proprietary training data in a particular domain. In biomedicine, there are various biological modalities, such as molecules, proteins, and cells, which are encoded by the language of life and exhibit significant modality gaps with human natural language. In this paper, we introduce BioMedGPT, an open multimodal generative pre-trained transformer (GPT) for biomedicine, to bridge the gap between the language of life and human natural language. BioMedGPT allows users to easily ``communicate'' with diverse biological modalities through free text, which is the first of its kind. BioMedGPT aligns different biological modalities with natural language via a large generative language model, namely, BioMedGPT-LM. We publish BioMedGPT-10B, which unifies the feature spaces of molecules, proteins, and natural language via encoding and alignment. Through fine-tuning, BioMedGPT-10B outperforms or is on par with human and significantly larger general-purpose foundation models on the biomedical QA task. It also demonstrates promising performance in the molecule QA and protein QA tasks, which could greatly accelerate the discovery of new drugs and therapeutic targets. In addition, BioMedGPT-LM-7B is the first large generative language model based on Llama2 in the biomedical domain, therefore is commercial friendly. Both BioMedGPT-10B and BioMedGPT-LM-7B are open-sourced to the research community. In addition, we publish the datasets that are meticulously curated for the alignment of multi-modalities, i.e., PubChemQA and UniProtQA. All the models, codes, and datasets are available at \url{https://github.com/PharMolix/OpenBioMed}.

cs.CE↗

Local Structure-aware Graph Contrastive Representation Learning

Traditional Graph Neural Network (GNN), as a graph representation learning method, is constrained by label information. However, Graph Contrastive Learning (GCL) methods, which tackle the label problem effectively, mainly focus on the feature information of the global graph or small subgraph structure (e.g., the first-order neighborhood). In the paper, we propose a Local Structure-aware Graph Contrastive representation Learning method (LS-GCL) to model the structural information of nodes from multiple views. Specifically, we construct the semantic subgraphs that are not limited to the first-order neighbors. For the local view, the semantic subgraph of each target node is input into a shared GNN encoder to obtain the target node embeddings at the subgraph-level. Then, we use a pooling function to generate the subgraph-level graph embeddings. For the global view, considering the original graph preserves indispensable semantic information of nodes, we leverage the shared GNN encoder to learn the target node embeddings at the global graph-level. The proposed LS-GCL model is optimized to maximize the common information among similar instances at three various perspectives through a multi-level contrastive loss function. Experimental results on five datasets illustrate that our method outperforms state-of-the-art graph representation learning approaches for both node classification and link prediction tasks.

cs.LG↗

MolFM: A Multimodal Molecular Foundation Model

Molecular knowledge resides within three different modalities of information sources: molecular structures, biomedical documents, and knowledge bases. Effective incorporation of molecular knowledge from these modalities holds paramount significance in facilitating biomedical research. However, existing multimodal molecular foundation models exhibit limitations in capturing intricate connections between molecular structures and texts, and more importantly, none of them attempt to leverage a wealth of molecular expertise derived from knowledge graphs. In this study, we introduce MolFM, a multimodal molecular foundation model designed to facilitate joint representation learning from molecular structures, biomedical texts, and knowledge graphs. We propose cross-modal attention between atoms of molecular structures, neighbors of molecule entities and semantically related texts to facilitate cross-modal comprehension. We provide theoretical analysis that our cross-modal pre-training captures local and global molecular knowledge by minimizing the distance in the feature space between different modalities of the same molecule, as well as molecules sharing similar structures or functions. MolFM achieves state-of-the-art performance on various downstream tasks. On cross-modal retrieval, MolFM outperforms existing models with 12.13% and 5.04% absolute gains under the zero-shot and fine-tuning settings, respectively. Furthermore, qualitative analysis showcases MolFM's implicit ability to provide grounding from molecular substructures and knowledge graphs. Code and models are available on https://github.com/BioFM/OpenBioMed.

q-bio.BM↗

Spectrum of linearized operator at ground states of a system of Klein-Gordon equations

Previously, the existence of ground state solutions of a family of systems of Klein-Gordon equations has been widely studied. In this article, we will study the linearized operator at the ground state and give a complete description of the spectrum for this operator in the radial case: the existence of a unique negative eigenvalue, no resonance at '1'(the bottom of the essential spectrum), no embedded eigenvalue in the essential spectrum and the spectral gap property (i.e., there is no eigenvalue in the interval (0,1]).

math.SP↗

Imaging Molecular Outflow in Massive Star-forming Regions with HNCO Lines

Protostellar outflows are considered a signpost of star formation. These outflows can cause shocks in the molecular gas and are typically traced by the line wings of certain molecules. HNCO (4--3) has been regarded as a shock tracer because of the high abundance in shocked regions. Here we present the first imaging results of HNCO (4--3) line wings toward nine sources in a sample of twenty three massive star-forming regions using the IRAM 30\,m telescope. We adopt the velocity range of the full width of HC$_{3}$N (10--9) and H$^{13}$CO$^+$ (1--0) emissions as the central emission values, beyond which the emission from HNCO (4--3) is considered to be from line wings. The spatial distributions of the red- and/or blue-lobes of HNCO (4--3) emission nicely associate with those lobes of HCO$^{+}$ (1--0) in most of the sources. High intensity ratios of HNCO (4--3) to HCO$^+$ (1--0) are obtained in the line wings. The derived column density ratios of HNCO to HCO$^+$ are consistent with those previously observed towards massive star-forming regions. These results provide direct evidence that HNCO could trace outflow in massive star-forming regions. This work also implies that the formation of some HNCO molecules is related to shock, either on the grain surface or within the shocked gas.

astro-ph.GA↗