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Kaizhang Wang

Publications and source records attributed to Kaizhang Wang.

2 recordsLinked to original sources

Disconnectivity in Multistationarity Regions of Cascade of Goldbeter--Koshland Loops

Dynamics of reaction networks is often modelled by parameterised polynomials and describing the set of parameters for which the system attains multiple positive equilibrium states is a challenging problem. In the full parameter space, determined by the reaction rate constants and the total concentrations, the existing methods can give an upper bound on the number of connected components of regions that enable multistationarity and this can give sufficient condition to establish path connectivity of these regions. In this article, we focus on cascade network of Goldbeter-Koshland loops and show that for this network, with $n\geq 2$ phosphorylation sites and at least one shared phosphatase for dephosphorylation, the region in the space of reaction rates is connected while it may not be true in the full parameter space. We explicitly show that there is a gap between the upper and lower bound for the number of connected regions for the case when $n=2$.

q-bio.QM

Hopf Bifurcations of Reaction Networks with Zero-One Stoichiometric Coefficients

For the reaction networks with zero-one stoichiometric coefficients (or simply zero-one networks), we prove that if a network admits a Hopf bifurcation, then the rank of the stoichiometric matrix is at least four. As a corollary, we show that if a zero-one network admits a Hopf bifurcation, then it contains at least four species and five reactions. As applications, we show that there exist rank-four subnetworks, which have the capacity for Hopf bifurcations/oscillations, in two biologically significant networks: the MAPK cascades and the ERK network. We provide a computational tool for computing all four-species, five-reaction, zero-one networks that have the capacity for Hopf bifurcations.

q-bio.MN