arXiv subjects

Kamal Choudhary

Publications and source records attributed to Kamal Choudhary.

At least 37 records · Page 2Linked to original sources

arXiv2025

ParquetDB: A Lightweight Python Parquet-Based Database

Traditional data storage formats and databases often introduce complexities and inefficiencies that hinder rapid iteration and adaptability. To address these challenges, we introduce ParquetDB, a Python-based database framework that leverages the Parquet file format's optimized columnar storage. ParquetDB offers efficient serialization and deserialization, native support for complex and nested data types, reduced dependency on indexing through predicate pushdown filtering, and enhanced portability due to its file-based storage system. Benchmarks show that ParquetDB outperforms traditional databases like SQLite and MongoDB in managing large volumes of data, especially when using data formats compatible with PyArrow. We validate ParquetDB's practical utility by applying it to the Alexandria 3D Materials Database, efficiently handling approximately 4.8 million complex and nested records. By addressing the inherent limitations of existing data storage systems and continuously evolving to meet future demands, ParquetDB has the potential to significantly streamline data management processes and accelerate research development in data-driven fields.

cs.DB↗

arXiv2025

CHIPS-FF: Evaluating Universal Machine Learning Force Fields for Material Properties

In this work, we introduce CHIPS-FF (Computational High-Performance Infrastructure for Predictive Simulation-based Force Fields), a universal, open-source benchmarking platform for machine learning force fields (MLFFs). This platform provides robust evaluation beyond conventional metrics such as energy, focusing on complex properties including elastic constants, phonon spectra, defect formation energies, surface energies, and interfacial and amorphous phase properties. Utilizing 16 graph-based MLFF models including ALIGNN-FF, CHGNet, MatGL, MACE, SevenNet, ORB, MatterSim and OMat24, the CHIPS-FF workflow integrates the Atomic Simulation Environment (ASE) with JARVIS-Tools to facilitate automated high-throughput simulations. Our framework is tested on a set of 104 materials, including metals, semiconductors and insulators representative of those used in semiconductor components, with each MLFF evaluated for convergence, accuracy, and computational cost. Additionally, we evaluate the force-prediction accuracy of these models for close to 2 million atomic structures. By offering a streamlined, flexible benchmarking infrastructure, CHIPS-FF aims to guide the development and deployment of MLFFs for real-world semiconductor applications, bridging the gap between quantum mechanical simulations and large-scale device modeling.

cond-mat.mtrl-sci↗

arXiv2025

Quantum Monte Carlo and density functional theory study of strain and magnetism in 2D 1T-VSe$_2$ with charge density wave states

Two-dimensional (2D) 1T-VSe$_2$ has prompted significant interest due to the discrepancies regarding alleged ferromagnetism (FM) at room temperature, charge density wave (CDW) states and the interplay between the two. We employed a combined Diffusion Monte Carlo (DMC) and density functional theory (DFT) approach to accurately investigate the magnetic properties, CDW states, and their response to strain in monolayer 1T-VSe$_2$. Our calculations show the delicate competition between various phases, revealing critical insights into the relationship between their energetic and structural properties. We performed classical Monte Carlo simulations informed by our DMC and DFT results, and found the magnetic transition temperature ($T_c$) of the undistorted (non-CDW) FM phase to be 228 K and the distorted (CDW) phase to be 68 K. Additionally, we studied the response of biaxial strain on the energetic stability and magnetic properties of various phases of 2D 1T-VSe$_2$ and found that small amounts of strain can increase the $T_c$, suggesting a promising route for engineering and enhancing magnetic behavior. Finally, we synthesized 1T-VSe$_2$ and performed Raman spectroscopy measurements, which were in close agreement with our calculated results, validating our computational approach. Our work emphasizes the role of highly accurate DMC methods in advancing the understanding of monolayer 1T-VSe$_2$ and provides a robust framework for future studies of 2D magnetic materials.

cond-mat.mtrl-sci↗

arXiv2025

A practical guide to machine learning interatomic potentials -- Status and future

The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years.

cond-mat.mtrl-sci↗

arXiv2025

BenchQC: A Benchmarking Toolkit for Quantum Computation

The Variational Quantum Eigensolver (VQE) is a promising algorithm for quantum computing applications in chemistry and materials science, particularly in addressing the limitations of classical methods for complex systems. This study benchmarks the performance of the VQE for calculating ground-state energies of aluminum clusters (Al$^-$, Al$_2$, and Al$_3^-$) within a quantum-density functional theory (DFT) embedding framework, systematically varying key parameters -- (I) classical optimizers, (II) circuit types, (III) number of repetitions, (IV) simulator types, (V) basis sets, and (VI) noise models. Our findings demonstrate that certain optimizers achieve efficient and accurate convergence, while circuit choice and basis set selection significantly impact accuracy, with higher-level basis sets closely matching classical computation data from Numerical Python Solver (NumPy) and Computational Chemistry Comparison and Benchmark DataBase (CCCBDB). To evaluate the workflow under realistic conditions, we employed IBM noise models to simulate the effects of hardware noise. The results showed close agreement with CCCBDB benchmarks, with percent errors consistently below 0.2 percent. The results establish VQE's capability for reliable energy estimations and highlight the importance of optimizing quantum-DFT parameters to balance computational cost and precision. This work paves the way for broader VQE benchmarking on diverse chemical systems, with plans to make results accessible on Joint Automated Repository for Various Integrated Simulations (JARVIS) and develop a Python package to support the quantum chemistry and materials science communities in advancing quantum-enhanced discovery.

quant-ph↗

arXiv2025

Intrinsic Direct Air Capture

We present new metrics to evaluate solid sorbent materials for Direct Air Capture (DAC). These new metrics provide a theoretical upper bound on CO2 captured per energy as well as a theoretical upper limit on the purity of the captured CO2. These new metrics are based entirely on intrinsic material properties and are therefore agnostic to the design of the DAC system. These metrics apply to any adsorption-refresh cycle design. In this work we demonstrate the use of these metrics with the example of temperature-pressure swing refresh cycles. The main requirement for applying these metrics is to describe the equilibrium uptake (along with a few other materials properties) of each species in terms of the thermodynamic variables (e.g. temperature, pressure). We derive these metrics from thermodynamic energy balances. To apply these metrics on a set of examples, we first generated approximations of the necessary materials properties for 11 660 metal-organic framework materials (MOFs). We find that the performance of the sorbents is highly dependent on the path through thermodynamic parameter space. These metrics allow for: 1) finding the optimum materials given a particular refresh cycle, and 2) finding the optimum refresh cycles given a particular sorbent. Applying these metrics to the database of MOFs lead to the following insights: 1) start cold - the equilibrium uptake of CO2 diverges from that of N2 at lower temperatures, and 2) selectivity of CO2 vs other gases at any one point in the cycle does not matter - what matters is the relative change in uptake along the cycle.

cond-mat.mtrl-sci↗

arXiv2024

AtomGPT: Atomistic Generative Pre-trained Transformer for Forward and Inverse Materials Design

Large language models (LLMs) such as generative pretrained transformers (GPTs) have shown potential for various commercial applications, but their applicability for materials design remains underexplored. In this article, we introduce AtomGPT, a model specifically developed for materials design based on transformer architectures, to demonstrate the capability for both atomistic property prediction and structure generation. We show that a combination of chemical and structural text descriptions can efficiently predict material properties with accuracy comparable to graph neural network models, including formation energies, electronic bandgaps from two different methods and superconducting transition temperatures. Furthermore, we demonstrate that AtomGPT can generate atomic structures for tasks such as designing new superconductors, with the predictions validated through density functional theory calculations. This work paves the way for leveraging LLMs in forward and inverse materials design, offering an efficient approach to the discovery and optimization of materials.

cond-mat.mtrl-sci↗

arXiv2024

Probing out-of-distribution generalization in machine learning for materials

Scientific machine learning (ML) endeavors to develop generalizable models with broad applicability. However, the assessment of generalizability is often based on heuristics. Here, we demonstrate in the materials science setting that heuristics based evaluations lead to substantially biased conclusions of ML generalizability and benefits of neural scaling. We evaluate generalization performance in over 700 out-of-distribution tasks that features new chemistry or structural symmetry not present in the training data. Surprisingly, good performance is found in most tasks and across various ML models including simple boosted trees. Analysis of the materials representation space reveals that most tasks contain test data that lie in regions well covered by training data, while poorly-performing tasks contain mainly test data outside the training domain. For the latter case, increasing training set size or training time has marginal or even adverse effects on the generalization performance, contrary to what the neural scaling paradigm assumes. Our findings show that most heuristically-defined out-of-distribution tests are not genuinely difficult and evaluate only the ability to interpolate. Evaluating on such tasks rather than the truly challenging ones can lead to an overestimation of generalizability and benefits of scaling.

cond-mat.mtrl-sci↗

arXiv2024

Data-driven Design of High Pressure Hydride Superconductors using DFT and Deep Learning

The observation of superconductivity in hydride-based materials under ultrahigh pressures (for example, H$_3$S and LaH$_{10}$) has fueled the interest in a more data-driven approach to discovering new high-pressure hydride superconductors. In this work, we performed density functional theory (DFT) calculations to predict the critical temperature ($T_c$) of over 900 hydride materials under a pressure range of (0 to 500) GPa, where we found 122 dynamically stable structures with a $T_c$ above MgB$_2$ (39 K). To accelerate screening, we trained a graph neural network (GNN) model to predict $T_c$ and demonstrated that a universal machine learned force-field can be used to relax hydride structures under arbitrary pressures, with significantly reduced cost. By combining DFT and GNNs, we can establish a more complete map of hydrides under pressure.

cond-mat.mtrl-sci↗

arXiv2024

InterMat: Accelerating Band Offset Prediction in Semiconductor Interfaces with DFT and Deep Learning

We introduce a computational framework (InterMat) to predict band offsets of semiconductor interfaces using density functional theory (DFT) and graph neural networks (GNN). As a first step, we benchmark OptB88vdW generalized gradient approximation (GGA) work functions and electron affinities for surfaces against experimental data with accuracies of 0.29 eV and 0.39 eV, respectively. Similarly, we evaluate band offset values using independent unit (IU) and alternate slab junction (ASJ) models leading to accuracies of 0.45 eV and 0.22 eV, respectively. We use bulk band structure calculations with the TBmBJ meta-GGA functional to correct for band gap underestimation when predicting conduction band properties. During ASJ structure generation, we use Zur algorithm along with a unified GNN force-field to tackle the conformation challenges of interface design. At present, we have 607 surface work functions calculated with DFT, from which we can compute 183921 IU band offsets as well as 593 directly calculated ASJ band offsets. Finally, as the space of all possible heterojunctions is too large to simulate with DFT, we develop generalized GNN models to quickly predict bulk band edges with an accuracy of 0.26 eV. We show how these models can be used to predict relevant quantities including ionization potentials, electron affinities, and IU-based band offsets. We establish simple rules using the above models to pre-screen potential semiconductor devices from a vast pool of nearly 1.4 trillion candidate interfaces. InterMat is available at website: https://github.com/usnistgov/intermat

cond-mat.mtrl-sci↗

arXiv2024

Developments and applications of the OPTIMADE API for materials discovery, design, and data exchange

The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a growing federation of databases, enhancing the accessibility and discoverability of materials and chemical data. Since the first release of the OPTIMADE specification (v1.0), the API has undergone significant development, leading to the upcoming v1.2 release, and has underpinned multiple scientific studies. In this work, we highlight the latest features of the API format, accompanying software tools, and provide an update on the implementation of OPTIMADE in contributing materials databases. We end by providing several use cases that demonstrate the utility of the OPTIMADE API in materials research that continue to drive its ongoing development.

cond-mat.mtrl-sci↗

arXiv2024

JARVIS-Leaderboard: A Large Scale Benchmark of Materials Design Methods

Lack of rigorous reproducibility and validation are major hurdles for scientific development across many fields. Materials science in particular encompasses a variety of experimental and theoretical approaches that require careful benchmarking. Leaderboard efforts have been developed previously to mitigate these issues. However, a comprehensive comparison and benchmarking on an integrated platform with multiple data modalities with both perfect and defect materials data is still lacking. This work introduces JARVIS-Leaderboard, an open-source and community-driven platform that facilitates benchmarking and enhances reproducibility. The platform allows users to set up benchmarks with custom tasks and enables contributions in the form of dataset, code, and meta-data submissions. We cover the following materials design categories: Artificial Intelligence (AI), Electronic Structure (ES), Force-fields (FF), Quantum Computation (QC) and Experiments (EXP). For AI, we cover several types of input data, including atomic structures, atomistic images, spectra, and text. For ES, we consider multiple ES approaches, software packages, pseudopotentials, materials, and properties, comparing results to experiment. For FF, we compare multiple approaches for material property predictions. For QC, we benchmark Hamiltonian simulations using various quantum algorithms and circuits. Finally, for experiments, we use the inter-laboratory approach to establish benchmarks. There are 1281 contributions to 274 benchmarks using 152 methods with more than 8 million data-points, and the leaderboard is continuously expanding. The JARVIS-Leaderboard is available at the website: https://pages.nist.gov/jarvis_leaderboard

cond-mat.mtrl-sci↗

arXiv2024

Efficient first principles based modeling via machine learning: from simple representations to high entropy materials

High-entropy materials (HEMs) have recently emerged as a significant category of materials, offering highly tunable properties. However, the scarcity of HEM data in existing density functional theory (DFT) databases, primarily due to computational expense, hinders the development of effective modeling strategies for computational materials discovery. In this study, we introduce an open DFT dataset of alloys and employ machine learning (ML) methods to investigate the material representations needed for HEM modeling. Utilizing high-throughput DFT calculations, we generate a comprehensive dataset of 84k structures, encompassing both ordered and disordered alloys across a spectrum of up to seven components and the entire compositional range. We apply descriptor-based models and graph neural networks to assess how material information is captured across diverse chemical-structural representations. We first evaluate the in-distribution performance of ML models to confirm their predictive accuracy. Subsequently, we demonstrate the capability of ML models to generalize between ordered and disordered structures, between low-order and high-order alloys, and between equimolar and non-equimolar compositions. Our findings suggest that ML models can generalize from cost-effective calculations of simpler systems to more complex scenarios. Additionally, we discuss the influence of dataset size and reveal that the information loss associated with the use of unrelaxed structures could significantly degrade the generalization performance. Overall, this research sheds light on several critical aspects of HEM modeling and offers insights for data-driven atomistic modeling of HEMs.

cond-mat.mtrl-sci↗

arXiv2023

Recent progress in the JARVIS infrastructure for next-generation data-driven materials design

The Joint Automated Repository for Various Integrated Simulations (JARVIS) infrastructure at the National Institute of Standards and Technology (NIST) is a large-scale collection of curated datasets and tools with more than 80000 materials and millions of properties. JARVIS uses a combination of electronic structure, artificial intelligence (AI), advanced computation and experimental methods to accelerate materials design. Here we report some of the new features that were recently included in the infrastructure such as: 1) doubling the number of materials in the database since its first release, 2) including more accurate electronic structure methods such as Quantum Monte Carlo, 3) including graph neural network-based materials design, 4) development of unified force-field, 5) development of a universal tight-binding model, 6) addition of computer-vision tools for advanced microscopy applications, 7) development of a natural language processing tool for text-generation and analysis, 8) debuting a large-scale benchmarking endeavor, 9) including quantum computing algorithms for solids, 10) integrating several experimental datasets and 11) staging several community engagement and outreach events. New classes of materials, properties, and workflows added to the database include superconductors, two-dimensional (2D) magnets, magnetic topological materials, metal-organic frameworks, defects, and interface systems. The rich and reliable datasets, tools, documentation, and tutorials make JARVIS a unique platform for modern materials design. JARVIS ensures openness of data and tools to enhance reproducibility and transparency and to promote a healthy and collaborative scientific environment.

cond-mat.mtrl-sci↗

arXiv2023

Approaches for Uncertainty Quantification of AI-predicted Material Properties: A Comparison

The development of large databases of material properties, together with the availability of powerful computers, has allowed machine learning (ML) modeling to become a widely used tool for predicting material performances. While confidence intervals are commonly reported for such ML models, prediction intervals, i.e., the uncertainty on each prediction, are not as frequently available. Here, we investigate three easy-to-implement approaches to determine such individual uncertainty, comparing them across ten ML quantities spanning energetics, mechanical, electronic, optical, and spectral properties. Specifically, we focused on the Quantile approach, the direct machine learning of the prediction intervals and Ensemble methods.

cond-mat.mtrl-sci↗

arXiv2023

Accelerating Defect Predictions in Semiconductors Using Graph Neural Networks

Here, we develop a framework for the prediction and screening of native defects and functional impurities in a chemical space of Group IV, III-V, and II-VI zinc blende (ZB) semiconductors, powered by crystal Graph-based Neural Networks (GNNs) trained on high-throughput density functional theory (DFT) data. Using an innovative approach of sampling partially optimized defect configurations from DFT calculations, we generate one of the largest computational defect datasets to date, containing many types of vacancies, self-interstitials, anti-site substitutions, impurity interstitials and substitutions, as well as some defect complexes. We applied three types of established GNN techniques, namely Crystal Graph Convolutional Neural Network (CGCNN), Materials Graph Network (MEGNET), and Atomistic Line Graph Neural Network (ALIGNN), to rigorously train models for predicting defect formation energy (DFE) in multiple charge states and chemical potential conditions. We find that ALIGNN yields the best DFE predictions with root mean square errors around 0.3 eV, which represents a prediction accuracy of 98 % given the range of values within the dataset, improving significantly on the state-of-the-art. Models are tested for different defect types as well as for defect charge transition levels. We further show that GNN-based defective structure optimization can take us close to DFT-optimized geometries at a fraction of the cost of full DFT. DFT-GNN models enable prediction and screening across thousands of hypothetical defects based on both unoptimized and partially-optimized defective structures, helping identify electronically active defects in technologically-important semiconductors.

cond-mat.mtrl-sci↗

arXiv2023

ChemNLP: A Natural Language Processing based Library for Materials Chemistry Text Data

In this work, we present the ChemNLP library that can be used for 1) curating open access datasets for materials and chemistry literature, developing and comparing traditional machine learning, transformers and graph neural network models for 2) classifying and clustering texts, 3) named entity recognition for large-scale text-mining, 4) abstractive summarization for generating titles of articles from abstracts, 5) text generation for suggesting abstracts from titles, 6) integration with density functional theory dataset for identifying potential candidate materials such as superconductors, and 7) web-interface development for text and reference query. We primarily use the publicly available arXiv and Pubchem datasets but the tools can be used for other datasets as well. Moreover, as new models are developed, they can be easily integrated in the library. ChemNLP is available at the websites: https://github.com/usnistgov/chemnlp and https://jarvis.nist.gov/jarvischemnlp.

cond-mat.mtrl-sci↗

arXiv2023

Inverse Design of Next-generation Superconductors Using Data-driven Deep Generative Models

Finding new superconductors with a high critical temperature ($T_c$) has been a challenging task due to computational and experimental costs. We present a diffusion model inspired by the computer vision community to generate new superconductors with unique structures and chemical compositions. Specifically, we used a crystal diffusion variational autoencoder (CDVAE) along with atomistic line graph neural network (ALIGNN) pretrained models and the Joint Automated Repository for Various Integrated Simulations (JARVIS) superconducting database of density functional theory (DFT) calculations to generate new superconductors with a high success rate. We started with a DFT dataset of $\approx$1000 superconducting materials to train the diffusion model. We used the model to generate 3000 new structures, which along with pre-trained ALIGNN screening results in 61 candidates. For the top candidates, we performed DFT calculations for validation. Such approaches go beyond the funnel-like materials design approaches and allow for the inverse design of next-generation materials.

cond-mat.supr-con↗