arXiv subjects

Kasra Naftchi-Ardebili

Publications and source records attributed to Kasra Naftchi-Ardebili.

5 recordsLinked to original sources

arXiv2024

A deep-learning model for one-shot transcranial ultrasound simulation and phase aberration correction

Transcranial ultrasound (TUS) has emerged as a promising tool in clinical and research settings due to its potential to modulate neuronal activity, open the blood-brain barrier, facilitate targeted drug delivery via nanoparticles, and perform thermal ablation, all non-invasively. By delivering focused ultrasound waves to precise regions anywhere in the brain, TUS enables targeted energy deposition and is being explored in over fifty clinical trials as a treatment for conditions such as opioid addiction, Alzheimer's disease, dementia, epilepsy, and glioblastoma. However, effective TUS treatment requires careful ultrasound parameter design and precise computation of the focal spot's location and pressure, as skull heterogeneity increases the risk of off-target sonication or insufficient energy delivery to neural tissue. In clinical settings, this phase aberration correction must be computed within seconds. To achieve this, commercial devices often rely on faster methods, such as ray tracing, to predict the focus location and pressure. While computationally efficient, these methods may not always provide the high level of accuracy needed for optimal TUS delivery. We present TUSNet, the first end-to-end deep learning approach to solve for both the pressure field and phase aberration corrections without being bound to the inherent trade-off between accuracy and efficiency. TUSNet computes the 2D transcranial ultrasound pressure field and phase corrections within 21 milliseconds (over $1200\times$ faster than k-Wave, a MATLAB-based acoustic simulation package), achieving $98.3\%$ accuracy in estimating peak pressure magnitude at the focal spot with a mean positioning error of only $0.18$ mm compared to ground truth from k-Wave.

physics.med-ph↗

arXiv2024

Focal Volume, Acoustic Radiation Force, and Strain in Two-Transducer Regimes

Transcranial focused ultrasound stimulation (TUS) holds promise for non-invasive neural modulation in treating neurological disorders. Most clinically relevant targets are deep within the brain (near or at its geometric center), surrounded by other sensitive regions that need to be spared clinical intervention. However, in TUS, increasing frequency with the goal of improving spatial resolution reduces the effective penetration depth. We show that by using a pair of 1 MHz, orthogonally arranged transducers we improve the spatial resolution afforded by each of the transducers individually, by nearly 40 fold, achieving a sub-cubic millimeter target volume of $0.24\ mm^3$. We show that orthogonally placed transducers generate highly localized standing waves with Acoustic Radiation Force (ARF) arranged into periodic regions of compression and tension near the target. We further present an extended capability of the orthogonal setup, which is to impart selective pressures--either positive or negative, but not both--on the target. Lastly, we share our preliminary findings that strain can arise from both particle motion and ARF with the former reaching its maximum value at the focus, and the latter remaining null at the focus and reaching its maximum around the focus. As the field is investigating the mechanism of interaction in TUS by way of elucidating the mapping between ultrasound parameters and neural response, orthogonal transducers expand our toolbox by making it possible to conduct these investigations at much finer spatial resolutions, with localized and directed (compression vs. tension) ARF and the capability of applying selective pressures at the target.

physics.app-ph↗

arXiv2024

Biophysical effects and neuromodulatory dose of transcranial ultrasonic stimulation

Transcranial ultrasonic stimulation (TUS) has the potential to usher in a new era for human neuroscience by allowing spatially precise and high-resolution non-invasive targeting of both deep and superficial brain regions. Currently, fundamental research on the mechanisms of interaction between ultrasound and neural tissues is progressing in parallel with application-focused research. However, a major hurdle in the wider use of TUS is the selection of optimal parameters to enable safe and effective neuromodulation in humans. In this paper, we will discuss the major factors that determine both the safety and efficacy of TUS. We will discuss the thermal and mechanical biophysical effects of ultrasound, which underlie its biological effects, in the context of their relationships with tunable parameters. Based on this knowledge of biophysical effects, and drawing on concepts from radiotherapy, we propose a framework for conceptualising TUS dose.

physics.bio-ph↗

arXiv2024

Synthetic Skull CT Generation with Generative Adversarial Networks to Train Deep Learning Models for Clinical Transcranial Ultrasound

Deep learning offers potential for various healthcare applications, yet requires extensive datasets of curated medical images where data privacy, cost, and distribution mismatch across various acquisition centers could become major problems. To overcome these challenges, we propose a generative adversarial network (SkullGAN) to create large datasets of synthetic skull CT slices, geared towards training models for transcranial ultrasound. With wide ranging applications in treatment of essential tremor, Parkinson's, and Alzheimer's disease, transcranial ultrasound clinical pipelines can be significantly optimized via integration of deep learning. The main roadblock is the lack of sufficient skull CT slices for the purposes of training, which SkullGAN aims to address. Actual CT slices of 38 healthy subjects were used for training. The generated synthetic skull images were then evaluated based on skull density ratio, mean thickness, and mean intensity. Their fidelity was further analyzed using t-distributed stochastic neighbor embedding (t-SNE), Fréchet inception distance (FID) score, and visual Turing test (VTT) taken by four staff clinical radiologists. SkullGAN-generated images demonstrated similar quantitative radiological features to real skulls. t-SNE failed to separate real and synthetic samples from one another, and the FID score was 49. Expert radiologists achieved a 60\% mean accuracy on the VTT. SkullGAN makes it possible for researchers to generate large numbers of synthetic skull CT segments, necessary for training neural networks for medical applications involving the human skull, such as transcranial focused ultrasound, mitigating challenges with access, privacy, capital, time, and the need for domain expertise.

eess.IV↗

arXiv2011

Rank Restriction for the Variational Calculation of Two-electron Reduced Density Matrices of Many-electron Atoms and Molecules

Variational minimization of the ground-state energy as a function of the two-electron reduced density matrix (2-RDM), constrained by necessary $N$-representability conditions, provides a polynomial-scaling approach to studying strongly correlated molecules without computing the many-electron wavefunction. Here we introduce a new route to enhancing necessary conditions for $N$-representability through rank restriction of the 2-RDM. Rather than adding computationally more expensive $N$-representability conditions, we directly enhance the accuracy of two-particle (2-positivity) conditions through rank restriction, which removes degrees of freedom in the 2-RDM that are not sufficiently constrained. We select the rank of the particle-hole 2-RDM by deriving the ranks associated with model wavefunctions including both mean-field and antisymmetrized geminal power (AGP) wave functions. Because the 2-positivity conditions are exact for quantum systems with AGP ground states, the rank of the particle-hole 2-RDM from the AGP ansatz provides a minimum for its value in variational 2-RDM calculations of general quantum systems. To implement the rank-restricted conditions, we extend a first-order algorithm for large-scale semidefinite programming. The rank-restricted conditions significantly improve the accuracy of the energies; for example, the percentages of correlation energies recovered for HF, CO, and N$_{2}$ improve from 115.2%, 121.7%, and 121.5% without rank restriction to 97.8%, 101.1%, and 100.0% with rank restriction. Similar results are found at both equilibrium and non-equilibrium geometries. While more accurate, the rank-restricted $N$-representability conditions are less expensive computationally than the full-rank conditions.

quant-ph↗