arXiv subjects

Katja Seeliger

Publications and source records attributed to Katja Seeliger.

8 recordsLinked to original sources

arXiv2026

DOSE-I: A Multimodal Biosignal Dataset of Procedural Sedation for Endoscopy -- Technical Report

In this document, we describe characteristics and technical details of the multimodal biosignal dataset DOSE-I of procedural sedation for endoscopy published on zenodo. The DOSE-I dataset includes 78.5 hours of recording in 171 records ranging from 6.7 to 70.8 minutes (mean: 27.5, SD: 11.6) of 281 endoscopic procedures. 1129 (median: 6 per record) transitions of consciousness and 7328 (median: 39 per record) individual sedation depth labels were recorded. In addition to clinically annotated biosignals, the DOSE-I dataset provides detailed static data about the respective study subject and metadata about the respective recordings. To further support future research, we provide details about artifact detection and preprocessed pEEG features, too. C code used for this preprocessing is provided separately via Github.

eess.SP↗

arXiv2026

Neural network-based encoding in free-viewing fMRI with gaze-aware models

Representations learned by convolutional neural networks (CNNs) exhibit a remarkable resemblance to information processing patterns observed in the primate visual system on large neuroimaging datasets collected under diverse, naturalistic visual stimulation, but with instruction for participants to maintain central fixation. This viewing condition, however, diverges significantly from ecologically valid visual behaviour, suppresses activity in visually active regions, and imposes substantial cognitive load on the viewing task. We present a modification of the encoding model framework, adapting it for use with naturalistic vision datasets acquired under fully natural viewing conditions, without fixation, by incorporating eye-tracking data. Our gaze-aware encoding models were trained on the StudyForrest dataset, which features task-free naturalistic movie viewing. By combining eye-tracking data with the visual content of movie frames, we generate combined subject-wise gaze-stimulus specific feature time series. These time series are constructed by sampling only the locally and temporally relevant elements of the CNN feature map for each fixation. Our results demonstrate that gaze-aware encoding models match the performance of conventional encoding models with 112x fewer model parameters. Gaze-aware encoding models were especially beneficial for participants with more dynamic eye-movement patterns. Therefore, this approach opens the door to more ecologically valid models that can be built in more naturalistic settings, such as playing games or navigating virtual environments.

q-bio.NC↗

arXiv2025

CNeuroMod-THINGS, a densely-sampled fMRI dataset for visual neuroscience

Data-hungry neuro-AI modelling requires ever larger neuroimaging datasets. CNeuroMod-THINGS meets this need by capturing neural representations for a wide set of semantic concepts using well-characterized images in a new densely-sampled, large-scale fMRI dataset. Importantly, CNeuroMod-THINGS exploits synergies between two existing projects: the THINGS initiative (THINGS) and the Courtois Project on Neural Modelling (CNeuroMod). THINGS has developed a common set of thoroughly annotated images broadly sampling natural and man-made objects which is used to acquire a growing collection of large-scale multimodal neural responses. Meanwhile, CNeuroMod is acquiring hundreds of hours of fMRI data from a core set of participants during controlled and naturalistic tasks, including visual tasks like movie watching and videogame playing. For CNeuroMod-THINGS, four CNeuroMod participants each completed 33-36 sessions of a continuous recognition paradigm using approximately 4000 images from the THINGS stimulus set spanning 720 categories. We report behavioural and neuroimaging metrics that showcase the quality of the data. By bridging together large existing resources, CNeuroMod-THINGS expands our capacity to model broad slices of the human visual experience.

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arXiv2025

Neural encoding with affine feature response transforms

Current linearizing encoding models that predict neural responses to sensory input typically neglect neuroscience-inspired constraints that could enhance model efficiency and interpretability. To address this, we propose a new method called affine feature response transform (AFRT), which exploits the brain's retinotopic organization. Applying AFRT to encode multi-unit activity in areas V1, V4, and IT of the macaque brain, we demonstrate that AFRT reduces redundant computations and enhances the performance of current linearizing encoding models by segmenting each neuron's receptive field into an affine retinal transform, followed by a localized feature response. Remarkably, by factorizing receptive fields into a sequential affine component with three interpretable parameters (for shifting and scaling) and response components with a small number of feature weights per response, AFRT achieves encoding with orders of magnitude fewer parameters compared to unstructured models. We show that the retinal transform of each neuron's encoding agrees well with the brain's receptive field. Together, these findings suggest that this new subset within spatial transformer network can be instrumental in neural encoding models of naturalistic stimuli.

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arXiv2025

Inverse receptive field attention for naturalistic image reconstruction from the brain

Visual perception in the brain largely depends on the organization of neuronal receptive fields. Although extensive research has delineated the coding principles of receptive fields, most studies have been constrained by their foundational assumptions. Moreover, while machine learning has successfully been used to reconstruct images from brain data, this approach faces significant challenges, including inherent feature biases in the model and the complexities of brain structure and function. In this study, we introduce an inverse receptive field attention (IRFA) model, designed to reconstruct naturalistic images from neurophysiological data in an end-to-end fashion. This approach aims to elucidate the tuning properties and representational transformations within the visual cortex. The IRFA model incorporates an attention mechanism that determines the inverse receptive field for each pixel, weighting neuronal responses across the visual field and feature spaces. This method allows for an examination of the dynamics of neuronal representations across stimuli in both spatial and feature dimensions. Our results show highly accurate reconstructions of naturalistic data, independent of pre-trained models. Notably, IRF models trained on macaque V1, V4, and IT regions yield remarkably consistent spatial receptive fields across different stimuli, while the features to which neuronal representations are selective exhibit significant variation. Additionally, we propose a data-driven method to explore representational clustering within various visual areas, further providing testable hypotheses.

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arXiv2022

The neuroconnectionist research programme

Artificial Neural Networks (ANNs) inspired by biology are beginning to be widely used to model behavioral and neural data, an approach we call neuroconnectionism. ANNs have been lauded as the current best models of information processing in the brain, but also criticized for failing to account for basic cognitive functions. We propose that arguing about the successes and failures of a restricted set of current ANNs is the wrong approach to assess the promise of neuroconnectionism. Instead, we take inspiration from the philosophy of science, and in particular from Lakatos, who showed that the core of scientific research programmes is often not directly falsifiable, but should be assessed by its capacity to generate novel insights. Following this view, we present neuroconnectionism as a cohesive large-scale research programme centered around ANNs as a computational language for expressing falsifiable theories about brain computation. We describe the core of the programme, the underlying computational framework and its tools for testing specific neuroscientific hypotheses. Taking a longitudinal view, we review past and present neuroconnectionist projects and their responses to challenges, and argue that the research programme is highly progressive, generating new and otherwise unreachable insights into the workings of the brain.

q-bio.NC↗

arXiv2018

Generalization of an Upper Bound on the Number of Nodes Needed to Achieve Linear Separability

An important issue in neural network research is how to choose the number of nodes and layers such as to solve a classification problem. We provide new intuitions based on earlier results by An et al. (2015) by deriving an upper bound on the number of nodes in networks with two hidden layers such that linear separability can be achieved. Concretely, we show that if the data can be described in terms of N finite sets and the used activation function f is non-constant, increasing and has a left asymptote, we can derive how many nodes are needed to linearly separate these sets. This will be an upper bound that depends on the structure of the data. This structure can be analyzed using an algorithm. For the leaky rectified linear activation function, we prove separately that under some conditions on the slope, the same number of layers and nodes as for the aforementioned activation functions is sufficient. We empirically validate our claims.

stat.ML↗

arXiv2017

Deep adversarial neural decoding

Here, we present a novel approach to solve the problem of reconstructing perceived stimuli from brain responses by combining probabilistic inference with deep learning. Our approach first inverts the linear transformation from latent features to brain responses with maximum a posteriori estimation and then inverts the nonlinear transformation from perceived stimuli to latent features with adversarial training of convolutional neural networks. We test our approach with a functional magnetic resonance imaging experiment and show that it can generate state-of-the-art reconstructions of perceived faces from brain activations.

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