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Kenichi Soga

Publications and source records attributed to Kenichi Soga.

18 recordsLinked to original sources

Long-term marine acoustic and seismic monitoring using distributed acoustic sensing and deep learning

The ocean remains one of the least instrumented parts of Earth, and many geophysical, biological, and anthropogenic signals go undetected for lack of instrumentation. Distributed acoustic sensing (DAS) can transform submarine fiber-optic cables into dense seafloor sensor arrays, but extracting diverse signals from massive DAS recordings remains challenging. Here we present DASNet, a deep learning framework that detects, classifies, and picks arrival times of diverse marine signals in continuous DAS data. Applied to nearly four years of Seafloor Fiber-Optic Array in Monterey Bay recordings, DASNet identifies more than 620,000 events. These detections reveal local earthquakes; distant earthquake- and volcanic-eruption-generated T-waves from the southwestern Pacific and mid-ocean ridge systems; more than 510,000 blue and fin whale calls with seasonal and interannual variability consistent with hydrophone records; and vessel traffic near the cable. Together, these results show that submarine fiber-optic cables combined with deep learning enable scalable, high-resolution ocean monitoring.

physics.geo-ph

An elasto-viscoplastic thixotropic model for fresh concrete capturing flow-rest transition

The flow properties of fresh concrete are critical in the construction industry, as they directly affect casting quality and the durability of the final structure. Although non-Newtonian fluid models, such as the Bingham model, are widely used to model these flow properties, they often fail to capture key phenomena, including flow stoppage, and frequently rely on non-physical regularization or stabilization techniques to mitigate numerical instabilities at low shear rates. To address these limitations, this study proposes an elasto-viscoplastic constitutive model within the continuum mechanics framework, which treats fresh concrete as a solid-like material with a rate-dependent yield stress. The model inherently captures the transition from elastic response to viscous flow following Bingham rheology, and vice versa, enabling accurate prediction of flow cessation without ad-hoc criteria. Additionally, a thixotropy evolution law is incorporated to account for the time-dependent behavior resulting from physical flocculation and shear-induced deflocculation. The proposed model is implemented within the Material Point Method (MPM), whose Lagrangian formulation facilitates tracking of history-dependent variables and robust simulation of large deformation flows. Numerical examples demonstrate the model's effectiveness in reproducing a range of typical concrete flow scenarios, offering a more physically consistent numerical tool for optimizing concrete construction processes and minimizing defects.

cond-mat.soft

Transition Frequencies and Dynamic Amplification of Buried Lifelines: A Semi-Analytical Timoshenko Beam on Winkler Foundation Model

Underground lifelines, such as pipelines and tunnels, are susceptible to ground vibrations from seismic events, traffic, and other dynamic sources. Accurate prediction of their response is essential for ensuring structural safety and operability. This study introduces a semi-analytical model for transverse vibration analysis of buried lifelines, formulated using the Timoshenko beam theory on elastic foundation. The closed-form analytical solutions revealed that the vibration spectrum comprises four parts, separated by three transition frequencies. At each transition, the oscillatory characteristics of the modes change as a function of the system properties, leading to marked variations in dynamic amplification. The model's validity is confirmed through case studies of buried steel pipelines of varying lengths and operating conditions, showing excellent agreement with finite element simulations. A subsequent parametric study quantifies the influence of key factors - including soil stiffness and system length - on dynamic performance. The proposed method provides a computationally efficient and physically transparent framework for capturing complex vibration phenomena beyond simplified travelling-wave approaches, offering valuable guidance for the design and resilience assessment of underground lifeline systems subjected to various dynamic loads.

physics.class-ph

Absorbing boundary conditions in material point method adopting perfectly matched layer theory

This study focuses on solving the numerical challenges of imposing absorbing boundary conditions for dynamic simulations in the material point method (MPM). To attenuate elastic waves leaving the computational domain, the current work integrates the Perfectly Matched Layer (PML) theory into the implicit MPM framework. The proposed approach introduces absorbing particles surrounding the computational domain that efficiently absorb outgoing waves and reduce reflections, allowing for accurate modeling of wave propagation and its further impact on geotechnical slope stability analysis. The study also includes several benchmark tests to validate the effectiveness of the proposed method, such as several types of impulse loading and symmetric and asymmetric base shaking. The conducted numerical tests also demonstrate the ability to handle large deformation problems, including the failure of elasto-plastic soils under gravity and dynamic excitations. The findings extend the capability of MPM in simulating continuous analysis of earthquake-induced landslides, from shaking to failure.

physics.geo-ph

Mixed material point method formulation, stabilization, and validation for a unified analysis of free-surface and seepage flow

This paper presents a novel stabilized mixed material point method (MPM) designed for the unified modeling of free-surface and seepage flow. The unified formulation integrates the Navier-Stokes equation with the Darcy-Brinkman-Forchheimer equation, effectively capturing flows in both non-porous and porous domains. In contrast to the conventional Eulerian computational fluid dynamics (CFD) solver, which solves the velocity and pressure fields as unknown variables, the proposed method employs a monolithic displacement-pressure formulation adopted from the mixed-form updated-Lagrangian finite element method (FEM). To satisfy the discrete inf-sup stability condition, a stabilization strategy based on the variational multiscale method (VMS) is derived and integrated into the proposed formulation. Another distinctive feature is the implementation of blurred interfaces, which facilitate a seamless and stable transition of flows between free and porous domains, as well as across two distinct porous media. The efficacy of the proposed formulation is verified and validated through several benchmark cases in 1D, 2D, and 3D scenarios. Conducted numerical examples demonstrate enhanced accuracy and stability compared to analytical, experimental, and other numerical solutions.

math.NA

Application Potential of a Hybrid Ground Source Heat Pump Array for the UC Berkeley Campus Business and Law Node Energy System: A Preliminary Study

The current plan divides the UC Berkeley (UCB) campus energy system into five nodes, where the Business and Law node was studied because of an open field site for borehole installation. The Pacific Northwest National Laboratory's Commercial Prototype Building Models were used to estimate heating and cooling load requirements for UCB campus building types by considering model characteristics (for example, high base load from hospitals, high DHW in hotels) corresponding to the ASHRAE Standard 90.1-2013. Unscaled load profiles were created from the EnergyPlus building energy simulation and scaled with monitored peak load and annual energy use to generate the target node's hourly heating and cooling load profiles. An optimization problem was solved to design a hybrid GSHP system, where the objective function is the lifetime total cost of the system, and the optimization variables are the portion of heating and cooling loads covered by the GSHP system. Modelica models for air source and ground source heat pump systems were built for detailed case studies based on optimization results. In the Modelica model, the demand side is connected to the radiators in the building to transfer heat, and the source side is connected to GSHP, ASHP, or other heating and cooling facilities. The results demonstrate that an appropriate hybrid GSHP system can help reduce both borehole numbers and electricity consumption for the UCB campus site.

math.NA

Deformation Monitoring of Tunnel using Phase-based Motion Magnification and Optical Flow

During construction, continuous monitoring of underground tunnels can mitigate potential hazards and facilitate an in-depth understanding of the ground-tunnel interaction behavior. Traditional vision-based monitoring can directly capture an extensive range of motion but cannot separate the tunnel's vibration and deformation mode. Phase-based motion magnification is one of the techniques to magnify the motion in target frequency bands and identify system dynamics. Optical flow is a popular method of calculating the motion of image intensities in computer vision and has a much lower computational cost than Digital Image Correlation. This study combines PMM and OF to quantify the underground tunnel scene's magnified deformation mode pixel displacements. As motion magnification artifacts may lead to inaccurate quantification, the 2D Wiener filter is used to smooth the high-frequency content. With GPU acceleration, a dense OF algorithm computing each pixel's displacement is adopted to derive the whole scene motion. A validation experiment is conducted between the amplification motion and the actual motion of prisms preinstalled in the tunnel.

cs.CV

A barrier method for frictional contact on embedded interfaces

We present a barrier method for treating frictional contact on interfaces embedded in finite elements. The barrier treatment has several attractive features, including: (i) it does not introduce any additional degrees of freedom or iterative steps, (ii) it is free of inter-penetration, (iii) it avoids an ill-conditioned matrix system, and (iv) it allows one to control the solution accuracy directly. We derive the contact pressure from a smooth barrier energy function that is designed to satisfy the non-penetration constraint. Likewise, we make use of a smoothed friction law in which the stick-slip transition is described by a continuous function of the slip displacement. We discretize the formulation using the extended finite element method to embed interfaces inside elements, and devise an averaged surface integration scheme that effectively provides stable solutions without traction oscillations. Subsequently, we develop a way to tailor the parameters of the barrier method to embedded interfaces, such that the method can be used without parameter tuning. We verify and investigate the proposed method through numerical examples with varied levels of complexity. The numerical results demonstrate that the proposed method is remarkably robust for challenging frictional contact problems, while requiring low cost comparable to that of the penalty method.

math.NA

Micro-scale investigations of temperature-dependent Microbial-Induced Carbonate Precipitation (MICP) in the temperature range 4-50 °C

Microbially-Induced Carbonate Precipitation (MICP) involves a series of bio-geochemical reactions whereby microbes alter the surrounding aqueous environment and induce calcium carbonate precipitation. MICP has a broad range of applications, including in-situ soil stabilization. However, the reliability of this process is dependent on a number of environmental conditions. In particular, bacterial growth, bacterial activity, and precipitation kinetics all depend on temperature. Batch test and microfluidic chip experiments were performed in this study to investigate the effects of temperature on bacterial density and activity and the MICP processes occurring at different temperatures (4-50°C). Spatial and temporal variations in the formation and development of calcium carbonate precipitates, including their amount, type, growth rate, formation, and deformation characteristics, were monitored. Results show that different types of calcium carbonate precipitates with varying sizes and quantities were produced by varying the temperature. Low temperature (4°C) did not reduce bacterial activity, but limited the final amount of cementation; low temperature reduced bacterial growth and attachment ratio, as well as calcium carbonate precipitation rate. High temperature (50°C) conditions significantly reduced bacterial activity within a short period of time, whilst a repeated injection of bacteria before every two injections of cementation solution increased the final amount of cementation. The findings made from this paper provide insight into how MICP processes vary across a range of temperatures and could be valuable for optimising the MICP process for different applications.

physics.geo-ph

Liquefaction-Induced Dam Failure Simulation -- A Case for the Material Point Method

Seismic analysis of earthen dams is paramount to evaluate the risk of potential liquefaction and strain softening that can cause flow failure. Even though the current state of the art has moved away from the simplified empirical methods, modeling such large deformation flow failure remains a challenge especially in light of stress/strain history-dependent materials. The Material Point Method (MPM) describes the deformation of a continuum body discretized by a finite number of Lagrangian material points moving through an Eulerian background grid. The MPM is ideal for modeling large deformations with history-dependent constitutive models within the continuum framework. The upstream flow failure of the Lower San Fernando Dam during the 1971 San Fernando Earthquake is used in this paper to demonstrate the advantage of the MPM, where it successfully predicted the final deformed shape.

physics.geo-ph

An HPC-Based Hydrothermal Finite Element Simulator for Modeling Underground Response to Community-Scale Geothermal Energy Production

Geothermal heat, as renewable energy, shows great advantage with respect to its environmental impact due to its significantly lower CO2 emissions than conventional fossil fuel. Open and closed-loop geothermal heat pumps, which utilize shallow geothermal systems, are an efficient technology for cooling and heating buildings, especially in urban areas. Integrated use of geothermal energy technologies for district heating, cooling, and thermal energy storage can be applied to optimize the subsurface for communities to provide them with multiple sustainable energy and community resilience benefits. The utilization of the subsurface resources may lead to a variation in the underground environment, which might further impact local environmental conditions. However, very few simulators can handle such a highly complex set of coupled computations on a regional or city scale. We have developed high-performance computing (HPC) based hydrothermal finite element (FE) simulator that can simulate the subsurface and its hydrothermal conditions at a scale of tens of km. The HPC simulator enables us to investigate the subsurface thermal and hydrologic response to the built underground environment (such as basements and subways) at the community scale. In this study, a coupled hydrothermal simulator is developed based on the open-source finite element library deal.II. The HPC simulator was validated by comparing the results of a benchmark case study against COMSOL Multiphysics, in which Aquifer Thermal Energy Storage (ATES) is modeled and a process of heat injection into ATES is simulated. The use of an energy pile system at the Treasure Island redevelopment site (San Francisco, CA, USA) was selected as a case study to demonstrate the HPC capability of the developed simulator. The simulator is capable of modeling multiple city-scale geothermal scenarios in a reasonable amount of time.

cs.DC

Context-specific volume-delay curves by combining crowd-sourced traffic data with Automated Traffic Counters (ATC): a case study for London

Traffic congestion across the world has reached chronic levels. Despite many technological disruptions, one of the most fundamental and widely used functions within traffic modelling, the volume delay function, has seen little in the way of change since it was developed in the 1960's. Traditionally macroscopic methods have been employed to relate traffic volume to vehicular journey time. The general nature of these functions enables their ease of use and gives widespread applicability. However, they lack the ability to consider individual road characteristics (i.e. geometry, presence of traffic furniture, road quality and surrounding environment). This research investigates the feasibility to reconstruct the model using two different data sources, namely the traffic speed from Google Maps' Directions Application Programming Interface (API) and traffic volume data from automated traffic counters (ATC). Google's traffic speed data are crowd-sourced from the smartphone Global Positioning System (GPS) of road users, able to reflect real-time, context-specific traffic condition of a road. On the other hand, the ATCs enable the harvesting of the vehicle volume data over equally fine temporal resolutions (hourly or less). By combining them for different road types in London, new context-specific volume-delay functions can be generated. This method shows promise in selected locations with the generation of robust functions. In other locations it highlights the need to better understand other influencing factors, such as the presence of on road parking or weather events.

stat.AP

Enhancing strength of MICP-treated sandy soils: from micro to macro scale

Microbial-Induced Calcium carbonate (CaCO3) Precipitation (MICP) has been extensively studied for soil improvement in geotechnical engineering. The properties of calcium carbonate crystals such as size and quantity affect the strength of MICP-treated soil. This study demonstrates how the data from micro-scale microfluidic experiments that examine the effects of injection intervals and concentration of cementation solution on the properties of calcium carbonate crystals can be used to optimise the MICP treatment of macro-scale sand soil column experiments for effective strength enhancement. The micro-scale experiments reveal that, due to Ostwald ripening, longer injection intervals allow smaller crystals to dissolve and reprecipitate into larger crystals regardless of the concentration of cementation solution. By applying this finding in the macro-scale experiments, a treatment duration of 6 days, where injection intervals were 12 h, 24 h, and 48 h for cementation solution concentration of 0.25 M, 0.5 M and 1.0 M, respectively, was long enough to precipitate crystals large enough for effective strength enhancement. This was indicated by the fact that significantly higher soil strength and larger crystals were produced when treatment duration increased from 3 days to 6 days, but not when it increased from 6 days to 12 days.

physics.geo-ph

Effects of bacterial density on growth rate and characteristics of microbial-induced CaCO3 precipitates: a particle-scale experimental study

Microbial-Induced Carbonate Precipitation (MICP) has been explored for more than a decade as a promising soil improvement technique. However, it is still challenging to predict and control the growth rate and characteristics of CaCO3 precipitates, which directly affect the engineering performance of MICP-treated soils. In this study, we employ a microfluidics-based pore scale model to observe the effect of bacterial density on the growth rate and characteristics of CaCO3 precipitates during MICP processes occurring at the sand particle scale. Results show that the precipitation rate of CaCO3 increases with bacterial density in the range between 0.6e8 and 5.2e8 cells/ml. Bacterial density also affects both the size and number of CaCO3 crystals. A low bacterial density of 0.6e8 cells/ml produced 1.1e6 crystals/ml with an average crystal volume of 8,000 um3, whereas a high bacterial density of 5.2e8 cells/ml resulted in more crystals (2.0e7 crystals/ml) but with a smaller average crystal volume of 450 um3. The produced CaCO3 crystals were stable when the bacterial density was 0.6e8 cells/ml. When the bacterial density was 4-10 times higher, the crystals were first unstable and then transformed into more stable CaCO3 crystals. This suggests that bacterial density should be an important consideration in the design of MICP protocols.

q-bio.QM

Scalable and modular material point method for large-scale simulations

In this paper, we describe a new scalable and modular material point method (MPM) code developed for solving large-scale problems in continuum mechanics. The MPM is a hybrid Eulerian-Lagrangian approach, which uses both moving material points and computational nodes on a background mesh. The MPM has been successfully applied to solve large-deformation problems such as landslides, failure of slopes, concrete flows, etc. Solving these large-deformation problems result in the material points actively moving through the mesh. Developing an efficient parallelisation scheme for the MPM code requires dynamic load-balancing techniques for both the material points and the background mesh. This paper describes the data structures and algorithms employed to improve the performance and portability of the MPM code. An object-oriented programming paradigm is adopted to modularise the MPM code. The Unified Modelling Language (UML) diagram of the MPM code structure is shown in Figure 1.

physics.geo-ph

Modeling irregular boundaries using isoparametric elements in the Material Point Method

The Material Point Method (MPM) is a hybrid Eulerian-Lagrangian approach capable of simulating large deformation problems of history-dependent materials. While the MPM can represent complex and evolving material domains by using Lagrangian points, boundary conditions are often applied to the Eulerian nodes of the background mesh nodes. Hence, the use of a structured mesh may become prohibitively restrictive for modeling complex boundaries such as a landslide topography. We study the suitability of unstructured background mesh with isoparametric elements to model irregular boundaries in the MPM. An inverse mapping algorithm is used to transform the material points from the global coordinates to the local natural coordinates. Dirichlet velocity and frictional boundary conditions are applied in the local coordinate system at each boundary node. This approach of modeling complex boundary conditions is validated by modeling the dynamics of a gravity-driven rigid block sliding on an inclined plane. This method is later applied to a flume test of controlled debris flow on an inclined plane conducted by the United States Geological Survey (USGS).

physics.geo-ph

A microfluidic chip and its use in characterising the particle-scale behaviour of Microbial-Induced Carbonate Precipitation (MICP)

Microbial-Induced Carbonate Precipitation (MICP) is an innovative ground improvement technique which can enhance the strength and stiffness of soils, and can also control their hydraulic conductivity. These engineering properties of MICP-treated soils are affected by particle-scale behaviour of the precipitated carbonate, i.e. composition, amount and distribution, which are controlled by the MICP process occurring at the particle-scale. In this study, we designed and fabricated a microfluidic chip to improve our understanding of MICP at particle-scale by observing the behaviour of bacteria and CaCO3 crystals during this process. We found that bacteria became evenly distributed throughout the microfluidic chip after the injection of bacterial suspension, grew during bacterial settling, and detached during the injection of cementation solution. Bacteria aggregated during the cementation solution injection, and CaCO3 crystals formed at narrow pore throats or open pore bodies either during or after cementation solution injections.

physics.geo-ph

Mechanics of granular column collapse in fluid at varying slope angles

This paper investigates the effect of initial volume fraction on the runout characteristics of collapse of granular columns on slopes in fluid. Two-dimensional sub-grain scale numerical simulations are performed to understand the flow dynamics of granular collapse in fluid. The Discrete Element (DEM) technique is coupled with the Lattice Boltzmann Method (LBM), for fluid-grain interactions, to understand the evolution of submerged granular flows. The fluid phase is simulated using Multiple- Relaxation-Time LBM (LBM-MRT) for numerical stability. In order to simulate interconnected pore space in 2D, a reduction in the radius of the grains (hydrodynamic radius) is assumed during LBM computations. The collapse of granular column in fluid is compared with the dry cases to understand the effect of fluid on the runout behaviour. A parametric analysis is performed to assess the influence of the granular characteristics (initial packing) on the evolution of flow and run-out distances for slope angles of 0°, 2.5°, 5° and 7.5°. The granular flow dynamics is investigated by analysing the effect of hydroplaning, water entrainment and viscous drag on the granular mass. The mechanism of energy dissipation, shape of the flow front, water entrainment and evolution of packing density is used to explain the difference in the flow characteristics of loose and dense granular column collapse in fluid.

physics.geo-ph