arXiv subjects

Kento Yasuda

Publications and source records attributed to Kento Yasuda.

At least 19 recordsLinked to original sources

arXiv2026

Geometric formulation of state-dependent Langevin dynamics using scalar free energy

Stochastic dynamics with state-dependent diffusion are widely used for Brownian motion in confined, anisotropic, and hydrodynamically coupled systems. The conventional Langevin formulation includes a spurious drift associated with multiplicative noise, but its free energy generally does not transform as a scalar, meaning that the covariance is not explicit. Here, we formulate a geometrically consistent Langevin equation by introducing a scalar free energy and using the diffusion tensor as a metric on configuration space. The spurious drift is then expressed as a Christoffel contribution of the diffusion metric. While our formulation is equivalent to the conventional one through the relation between the non-scalar and scalar free energies, it makes the coordinate covariance explicit. We demonstrate its consistency in representative examples of state-dependent diffusion arising from coordinate transformations, geometrical confinement, and projection from curved to flat spaces.

cond-mat.soft↗

arXiv2026

Covariant Onsager and Onsager-Machlup principles for active and inertial dynamics

The Onsager principle provides a variational route to the phenomenological equations of dissipative dynamics through the minimization of the Rayleighian. We develop a covariant formulation of the Onsager principle for active and inertial systems, ensuring geometric consistency under coordinate transformations. To further incorporate thermal fluctuations, we formulate the Onsager-Machlup principle for active and inertial systems by considering the Onsager-Machlup functional and the corresponding path probability for stochastic trajectories. Requiring that the path probability obeys the detailed fluctuation theorem, we show that the extended Onsager-Machlup theory is consistent with stochastic thermodynamics. The extended OP and OMP offer a unified and useful variational framework for deriving the dynamical equations of active and inertial systems.

cond-mat.soft↗

arXiv2026

Most probable path and invariant sets in noise-induced transition to turbulence

Turbulence transition often arises from a subcritical transition between bistable states characterized by invariant sets of deterministic dynamical systems, and such transitions can be triggered by system noise as rare events. In this study, we employ the Onsager-Machlup (OM) formulation of stochastic dynamics to examine the Hamilton equations governing the most probable transition paths (MPPs). We introduce an effective potential function, termed the OM potential, which depends on the noise strength. Focusing on the Dauchot-Manneville model as a minimal system with an edge state, we comprehensively analyze the MPP between laminar and turbulent states for different transition times. We find that the MPPs cross the separatrix at nearly the same point regardless of the transition time, and the obtained OM action values suggest that the transition to turbulence occurs more frequently than the transition to the laminar state. Moreover, we numerically demonstrate that the noise-induced transition paths follow the OM potential landscape and its bifurcation diagram, indicating that the qualitative behavior of the MPPs is determined by the OM potential. Our methodology formulated in general dynamical systems provides a theoretical basis for predicting noise-induced transitions among invariant sets of the dynamics.

physics.flu-dyn↗

arXiv2025

Neural optimization of the most probable paths of 3D active Brownian particles

We develop a variational neural-network framework to determine the most probable path (MPP) of a 3D active Brownian particle (ABP) by directly minimizing the Onsager-Machlup integral (OMI). To obtain the OMI, we use the Onsager-Machlup variational principle for active systems and construct the Rayleighian of the ABP by including its active power. This approach reveals geometric transitions of the MPP from in-plane I- and U-shaped paths to 3D helical paths as the final time and net displacement are varied. We also demonstrate that the initial and final boundary conditions have a significant impact on the MPPs. Our results show that neural optimization combined with the Onsager-Machlup variational principle provides an efficient and versatile framework for exploring optimal transition pathways in active and nonequilibrium systems.

cond-mat.soft↗

arXiv2025

Demon's variational principle for informational active matter

The interplay between information, dissipation, and control is reshaping our understanding of thermodynamics in feedback-regulated systems. We develop the informational Onsager-Machlup principle, a generalized variational framework that unifies energetic, dissipative, and informational contributions within a single formalism. This framework introduces a conditioned Onsager-Machlup integral to quantify path entropy under specified memory states and enables the derivation of cumulant generating functions for arbitrary observables in systems with measurement and feedback. Our formulation is consistent with stochastic thermodynamics and information thermodynamics. Applying this principle to a minimal model of an information-driven swimmer, we obtain analytical expressions for the mean velocity and higher-order cumulants in the single-measurement case. For repeated measurements and the steady state, we derive approximate analytical expressions by using a Gaussian closure for the distribution of measured velocities. Our analytical expression shows good agreement with numerical results, except for cases of extreme drag asymmetry.

cond-mat.soft↗

arXiv2025

Thermally driven two-sphere microswimmer with internal feedback control

We discuss the locomotion of a thermally driven elastic two-sphere microswimmer with internal feedback control that is realized by the position-dependent friction coefficients. In our model, the two spheres are in equilibrium with independent heat baths having different temperatures, causing a heat flow between the two spheres. We generally show that the average velocity of the microswimmer is nonzero when the friction coefficients are position-dependent. Using the method of stochastic thermodynamics, we obtain the entropy production rate and discuss the efficiency of the two-sphere microswimmer. The proposed self-propulsion mechanism highlights the importance of information in active matter and can be a fundamental process in various biological systems.

cond-mat.soft↗

arXiv2024

Ornstein-Uhlenbeck information swimmers with external and internal feedback controls

Using an underdamped active Ornstein-Uhlenbeck particle, we propose two information swimmer models having either external or internal feedback control and perform their numerical simulations. Depending on the velocity that is measured after every fixed time interval (measurement time), the friction coefficient is modified in the externally controlled model, whereas the persistence time for the activity is changed in the internally controlled one. In the steady state, both of these information swimmers acquire finite average velocities in the noisy environment, and the efficiency can be maximized by tuning the measurement time. The internally controlled swimmer can generally achieve a larger velocity and efficiency than the externally controlled one when the active fluctuation is large.

cond-mat.soft↗

arXiv2024

Statistical formulation of Onsager-Machlup variational principle

Onsager's variational principle (OVP) provides us with a systematic way to derive dynamical equations for various soft matter and active matter. By reformulating the Onsager-Machlup variational principle (OMVP), which is a time-global principle, we propose a new method to incorporate thermal fluctuations. To demonstrate the utility of the statistical formulation of OMVP (SOMVP), we obtain the diffusion constant of a Brownian particle embedded in a viscous fluid only by maximizing the modified Onsager-Machlup integral for the surrounding fluid. We also apply our formulation to a Brownian particle in a steady shear flow, which is a typical example of a non-equilibrium system. Possible extensions of our formulation to internally driven active systems are discussed.

cond-mat.soft↗

arXiv2024

Time-correlation functions of stochastic three-sphere micromachines

We discuss and compare the statistical properties of two stochastic three-sphere micromachines, i.e., odd micromachine and thermal micromachine. We calculate the steady state time-correlation functions for these micromachines and decompose them into the symmetric and antisymmetric parts. In both cases, the cross-correlation between the two spring extensions has an antisymmetric part, which is a direct consequence of the broken time-reversal symmetry. For the odd micromachine, the antisymmetric part of the correlation function is proportional to the odd elasticity, whereas it is proportional to the temperature difference between the two edge spheres for the thermal micromachine. The entropy production rate and the Green-Kubo relations for the two micromachines are also obtained. Comparing the results of the two models, we argue an effective odd elastic constant of the thermal micromachine. The effective odd elasticity of the thermal micromachine is proportional to the temperature difference among the spheres, which causes an internal heat flow and leads to directional locomotion in the presence of hydrodynamic interactions.

cond-mat.stat-mech↗

arXiv2023

Irreversibility of stochastic state transitions in Langevin systems with odd elasticity

Active microscopic objects, e.g., an enzyme molecule, are modeled by the Langevin system with the odd elasticity, in which energy injection from the substrate to the enzyme is described by the antisymmetric part of the elastic matrix. By applying the Onsager--Machlup integral and large deviation theory to the Langevin system with odd elasticity, we can calculate the cumulant generating function of the irreversibility of the state transition. For an $N$-component system, we obtain a formal expression of the cumulant generating function and demonstrate that the oddness $\lambda$, which quantifies the antisymmetric part of the elastic matrix, leads to higher-order cumulants that do not appear in a passive elastic system. To demonstrate the effect of the oddness under the concrete parameter, we analyze the simplest two-component system and obtain the optimal transition path and cumulant generating function. The cumulants obtained from expansion of the cumulant generating function increase monotonically with the oddness. This implies that the oddness causes the uncertainty of stochastic state transitions.

cond-mat.soft↗

arXiv2023

Emergence of odd elasticity in a microswimmer using deep reinforcement learning

We use the Deep Q-Network with reinforcement learning to investigate the emergence of odd elasticity in an elastic microswimmer model. For an elastic microswimmer, it is challenging to obtain the optimized dynamics due to the intricate elastohydrodynamic interactions. However, our machine-trained model adopts a novel transition strategy (the waiting behavior) to optimize the locomotion. For the trained microswimmers, we evaluate the performance of the cycles by the product of the loop area (called non-reciprocality) and the loop frequency, and show that the average swimming velocity is proportional to the performance. By calculating the force-displacement correlations, we obtain the effective odd elasticity of the microswimmer to characterize its non-reciprocal dynamics. This emergent odd elasticity is shown to be closely related to the loop frequency of the cyclic deformation. Our work demonstrates the utility of machine learning in achieving optimal dynamics for elastic microswimmers and introduces post-analysis methods to extract crucial physical quantities such as non-reciprocality and odd elasticity.

cond-mat.soft↗

arXiv2023

Odd elastohydrodynamics: non-reciprocal living material in a viscous fluid

Motility is a fundamental feature of living matter, encompassing single cells and collective behavior. Such living systems are characterized by non-conservativity of energy and a large diversity of spatio-temporal patterns. Thus, fundamental physical principles to formulate their behavior are not yet fully understood. This study explores a violation of Newton's third law in motile active agents, by considering non-reciprocal mechanical interactions known as odd elasticity. By extending the description of odd elasticity to a nonlinear regime, we present a general framework for the swimming dynamics of active elastic materials in low-Reynolds-number fluids, such as wave-like patterns observed in eukaryotic cilia and flagella. We investigate the non-local interactions within a swimmer using generalized material elasticity and apply these concepts to biological flagellar motion. Through simple solvable models and the analysis of {\it Chlamydomonas} flagella waveforms and experimental data for human sperm, we demonstrate the wide applicability of a non-local and non-reciprocal description of internal interactions within living materials in viscous fluids, offering a unified framework for active and living matter physics.

cond-mat.soft↗

arXiv2023

Generalized Three-Sphere Microswimmers

Among several models for microswimmers, the three-sphere microswimmer proposed by Najafi and Golestanian captures the essential mechanism for the locomotion of a microswimmer in a viscous fluid. Owing to its simplicity and flexibility, the original three-sphere model has been extended and generalized in various ways to discuss new swimming mechanisms of microswimmers. We shall provide a systematic and concise review of the various extensions of the three-sphere microswimmers that have been developed by the present authors. In particular, we shall discuss the following seven cases; elastic, thermal, odd, autonomous three-sphere microswimmers; two interacting ones; and those in viscoelastic and structured fluids. The well-known Purcell's scallop theorem can be generalized for stochastic three-sphere microswimmers and also for the locomotion in viscoelastic and structured fluids.

cond-mat.soft↗

arXiv2022

Odd elasticity of a catalytic micromachine

We perform numerical simulations of a model micromachine driven by catalytic chemical reactions. Our model includes a mechano-chemical coupling between the structural variables and the nonequilibrium variable describing the catalytic reactions. The time-correlation functions of the structural variables are calculated and further analyzed in terms of odd Langevin dynamics. We obtain the effective odd elastic constant that manifests the broken time-reversal symmetry of a catalytic micromachine. Within the simulation, we separately estimate the quantity called nonreciprocality and show that its behavior is similar to that of the odd elasticity.Our approach suggests a new method to extract the nonequilibrium properties of a micromachine only by measuring its structural dynamics.

cond-mat.soft↗

arXiv2022

Simulations of Odd Microswimmers

We perform numerical simulations of odd microswimmers consisting of three spheres and two odd springs. To describe the hydrodynamic interaction, both the Oseen-type and the Rotne-Prager-Yamakawa (RPY)-type mobilities are used. For the Oseen-type mobility, the simulation results quantitatively reproduce the asymptotic expression of the average velocity. For the RPY-type mobility, on the other hand, the average velocity is smaller than that of the Oseen-type mobility and the deviation is more pronounced for larger spheres. We also perform simulations of microswimmers having different sphere sizes and show that the average velocity becomes smaller than that of the equal size case. The size of the middle sphere plays an important role in determining the average velocity.

cond-mat.soft↗

arXiv2022

Onsager's variational principle for nonreciprocal systems with odd elasticity

Using Onsager's variational principle, we derive dynamical equations for a nonequilibrium active system with odd elasticity. The elimination of the extra variable that is coupled to the nonequilibrium driving force leads to the nonreciprocal set of equations for the material coordinates. The obtained nonreciprocal equations manifest the physical origin of the odd elastic constants that are proportional to the nonequilibrium force and the friction coefficients. Our approach offers a systematic and consistent way to derive nonreciprocal equations for active matter in which the time-reversal symmetry is broken.

cond-mat.soft↗

arXiv2022

Most probable path of an active Brownian particle

In this study, we investigate the transition path of a free active Brownian particle (ABP) on a two-dimensional plane between two given states. The extremum conditions for the most probable path connecting the two states are derived using the Onsager--Machlup integral and its variational principle. We provide explicit solutions to these extremum conditions and demonstrate their nonuniqueness through an analogy with the pendulum equation indicating possible multiple paths. The pendulum analogy is also employed to characterize the shape of the globally most probable path obtained by explicitly calculating the path probability for multiple solutions. We comprehensively examine a translation process of an ABP to the front as a prototypical example. Interestingly, the numerical and theoretical analyses reveal that the shape of the most probable path changes from an I to a U shape and to the $\ell$ shape with an increase in the transition process time. The Langevin simulation also confirms this shape transition. We also discuss further method applications for evaluating a transition path in rare events in active matter.

cond-mat.stat-mech↗

arXiv2022

Lateral response of a layered material with interlayer friction

We investigate the mechanical properties of a layered material with interlayer friction. We propose a model that contains lateral elasticity and interlayer friction to obtain the response function both in the Fourier and real spaces. By investigating how the internal deformation is laterally induced due to the applied surface displacement, we find that it is transmitted into the material with an apparent phase difference. We also obtain the effective complex modulus of the layered material and show that it exhibits an intermediate power-law behavior in the low-frequency regime. Our result can be used to estimate the internal deformation of layered materials that exist on various different scales.

cond-mat.soft↗