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Khalid Ferji

Publications and source records attributed to Khalid Ferji.

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PolySet: Restoring the Statistical Ensemble Nature of Polymers for Machine Learning

Machine-learning (ML) models in polymer science typically treat a polymer as a single, perfectly defined molecular graph, even though real materials consist of stochastic ensembles of chains with distributed lengths. This mismatch between physical reality and digital representation limits the ability of current models to capture polymer behaviour. Here we introduce PolySet, a framework that represents a polymer as a finite, weighted ensemble of chains sampled from an assumed molar-mass distribution. This ensemble-based encoding is independent of chemical detail, compatible with any molecular representation and illustrated here in the homopolymer case using a minimal language model. We show that PolySet retains higher-order distributional moments (such as Mz, Mz+1), enabling ML models to learn tail-sensitive properties with greatly improved stability and accuracy. By explicitly acknowledging the statistical nature of polymer matter, PolySet establishes a physically grounded foundation for future polymer machine learning, naturally extensible to copolymers, block architectures, and other complex topologies.

cs.LG

Tear of Lipid Membranes by Nanoparticles

Health concerns associated with the advent of nanotechnologies have risen sharply when it was found that particles of nanoscopic dimensions reach the cell lumina. Plasma and organelle lipid membranes, which are exposed to both the incoming and the engulfed nanoparticles, are the primary targets of possible disruptions. However, reported adhesion, invagination and embedment of nanoparticles (NPs) do not compromise the membrane integrity, precluding direct bilayer damage as a mechanism for toxicity. Here it is shown that a lipid membrane can be torn by small enough nanoparticles, thus unveiling mechanisms for how lipid membrane can be compromised by tearing from nanoparticles. Surprisingly, visualization by cryo transmission electron microscopy (cryo-TEM) of liposomes exposed to nanoparticles revealed also that liposomal laceration is prevented by particle abundance. Membrane destruction results thus from a subtle particle-membrane interplay that is here elucidated. This brings into a firmer molecular basis the theorized mechanisms of nanoparticle effects on lipid bilayers and paves the way for a better assessment of nanoparticle toxicity.

cond-mat.soft