arXiv subjects

Kirone Mallick

Publications and source records attributed to Kirone Mallick.

At least 55 records · Page 3Linked to original sources

arXiv2011

Recursive structures in the multispecies TASEP

We consider a multi-species generalization of the totally asymmetric simple exclusion process (TASEP) with the simple hopping rule: for x and yth-class particles (x yx occurs with a rate independent from the values x and y. P. A. Ferrari and J. Martin (2007) obtained the stationary state of this model thanks to a combinatorial algorithm, which was subsequently interpreted as a matrix product representation by Evans et al. (2009). This `matrix ansatz' shows that the stationary state of the multi-species TASEP with N classes of particles (N-TASEP) can be constructed algebraically by the action of an operator on the (N-1)-TASEP stationary state. Besides, Arita et al. (2009) analyzed the spectral structure of the Markov matrix: they showed that the set of eigenvalues of the N-TASEP contains those of the (N-1)-TASEP and that the various spectral inclusions can be encoded in a hierarchical set-theoretic structure known as the Hasse diagram. Inspired by these works, we define nontrivial operators that allow us to construct eigenvectors of the N-TASEP by lifting the eigenvectors of the (N-1)-TASEP. This goal is achieved by generalizing the matrix product representation and the Ferrari-Martin algorithm. In particular, we show that the matrix ansatz is not only a convenient tool to write the stationary state but in fact intertwines Markov matrices of different values of N.

cond-mat.stat-mech↗

arXiv2011

A field-theoretic approach to nonequilibrium work identities

We study nonequilibrium work relations for a space-dependent field with stochastic dynamics (Model A). Jarzynski's equality is obtained through symmetries of the dynamical action in the path integral representation. We derive a set of exact identities that generalize the fluctuation-dissipation relations to non-stationary and far-from-equilibrium situations. These identities are prone to experimental verification. Furthermore, we show that a well-studied invariance of the Langevin equation under supersymmetry, which is known to be broken when the external potential is time-dependent, can be partially restored by adding to the action a term which is precisely Jarzynski's work. The work identities can then be retrieved as consequences of the associated Ward-Takahashi identities.

cond-mat.stat-mech↗

arXiv2011

Some Exact Results for the Exclusion Process

The asymmetric simple exclusion process (ASEP) is a paradigm for non-equilibrium physics that appears as a building block to model various low-dimensional transport phenomena, ranging from intracellular traffic to quantum dots. We review some recent results obtained for the system on a periodic ring by using the Bethe Ansatz. We show that this method allows to derive analytically many properties of the dynamics of the model such as the spectral gap and the generating function of the current. We also discuss the solution of a generalized exclusion process with $N$-species of particles and explain how a geometric construction inspired from queuing theory sheds light on the Matrix Product Representation technique that has been very fruitful to derive exact results for the ASEP.

cond-mat.stat-mech↗

arXiv2010

Diffusion and Multiplication in Random Media

We investigate the evolution of a population of non-interacting particles which undergo diffusion and multiplication. Diffusion is assumed to be homogeneous, while multiplication proceeds with different rates reflecting the distribution of nutrients. We focus on the situation where the distribution of nutrients is a stationary quenched random variable, and show that the population exhibits a super-exponential growth whenever the nutrient distribution is unbounded. We elucidate a huge difference between the average and typical asymptotic growths and emphasize the role played by the spatial correlations in the nutrient distribution.

cond-mat.stat-mech↗

arXiv2010

Fluctuations in Polymer Translocation

We investigate a model of chaperone-assisted polymer translocation through a nanopore in a membrane. Translocation is driven by irreversible random sequential absorption of chaperone proteins that bind to the polymer on one side of the membrane. The proteins are larger than the pore and hence the backward motion of the polymer is inhibited. This mechanism rectifies Brownian fluctuations and results in an effective force that drags the polymer in a preferred direction. The translocated polymer undergoes an effective biased random walk and we compute the corresponding diffusion constant. Our methods allow us to determine the large deviation function which, in addition to velocity and diffusion constant, contains the entire statistics of the translocated length.

cond-mat.stat-mech↗

arXiv2010

Fluctuation Relations for Quantum Markovian Dynamical System

We derive a general set of fluctuation relations for a nonequilibrium open quantum system described by a Lindblad master equation. In the special case of conservative Hamiltonian dynamics, these identities allow us to retrieve quantum versions of Jarzynski and Crooks relations. In the linear response regime, these fluctuation relations yield a fluctuation-dissipation theorem (FDT) valid for a stationary state arbitrarily far from equilibrium. For a closed system, this FDT reduces to the celebrated Callen-Welton-Kubo formula.

cond-mat.stat-mech↗

arXiv2010

Role of ATP-hydrolysis in the dynamics of a single actin filament

We study the stochastic dynamics of growth and shrinkage of single actin filaments taking into account insertion, removal, and ATP hydrolysis of subunits either according to the vectorial mechanism or to the random mechanism. In a previous work, we developed a model for a single actin or microtubule filament where hydrolysis occurred according to the vectorial mechanism: the filament could grow only from one end, and was in contact with a reservoir of monomers. Here we extend this approach in several ways, by including the dynamics of both ends and by comparing two possible mechanisms of ATP hydrolysis. Our emphasis is mainly on two possible limiting models for the mechanism of hydrolysis within a single filament, namely the vectorial or the random model. We propose a set of experiments to test the nature of the precise mechanism of hydrolysis within actin filaments.

q-bio.BM↗

arXiv2010

Transfer matrices for the totally asymmetric exclusion process

We consider the totally asymmetric simple exclusion process (TASEP) on a finite lattice with open boundaries. We show, using the recursive structure of the Markov matrix that encodes the dynamics, that there exist two transfer matrices $T_{L-1,L}$ and $\tilde{T}_{L-1,L}$ that intertwine the Markov matrices of consecutive system sizes: $\tilde{T}_{L-1,L}M_{L-1}=M_{L}T_{L-1,L}$. This semi-conjugation property of the dynamics provides an algebraic counterpart for the matrix-product representation of the steady state of the process.

cond-mat.stat-mech↗

arXiv2009

Exact results for an asymmetric annihilation process with open boundaries

We consider a nonequilibrium reaction-diffusion model on a finite one dimensional lattice with bulk and boundary dynamics inspired by Glauber dynamics of the Ising model. We show that the model has a rich algebraic structure that we use to calculate its properties. In particular, we show that the Markov dynamics for a system of a given size can be embedded in the dynamics of systems of higher sizes. This remark leads us to devise a technique we call the transfer matrix Ansatz that allows us to determine the steady state distribution and correlation functions. Furthermore, we show that the disorder variables satisfy very simple properties and we give a conjecture for the characteristic polynomial of Markov matrices. Lastly, we compare the transfer matrix Ansatz used here with the matrix product representation of the steady state of one-dimensional stochastic models.

cond-mat.stat-mech↗

arXiv2009

Influence of the Noise Spectrum on Stochastic Acceleration

We use an effective Markovian description to study the long-time behaviour of a nonlinear second order Langevin equation with Gaussian noise. When dissipation is neglected, the energy of the system grows as with time a power-law with an anomalous scaling exponent that depends both on the confining potential and on the high frequency distribution of the noise. The asymptotic expression of the Probability Distribution Function in phase space is calculated analytically. The results are extended to the case where small dissipative effects are taken into account.

nlin.CD↗

arXiv2009

Cumulants of the current in the weakly asymmetric exclusion process

We study the fluctuations of the total current for the partially asymmetric exclusion process in the scaling of a weak asymmetry (asymmetry of order the inverse of the size of the system) using Bethe Ansatz. Starting from the functional formulation of the Bethe equations, we obtain for all the cumulants of the current both the leading and next-to-leading contribution in the size of the system.

cond-mat.stat-mech↗

arXiv2008

Bethe Ansatz in the Bernoulli Matching Model of Random Sequence Alignment

For the Bernoulli Matching model of sequence alignment problem we apply the Bethe ansatz technique via an exact mapping to the 5--vertex model on a square lattice. Considering the terrace--like representation of the sequence alignment problem, we reproduce by the Bethe ansatz the results for the averaged length of the Longest Common Subsequence in Bernoulli approximation. In addition, we compute the average number of nucleation centers of the terraces.

cond-mat.stat-mech↗

arXiv2008

Statistical Properties of the Final State in One-dimensional Ballistic Aggregation

We investigate the long time behaviour of the one-dimensional ballistic aggregation model that represents a sticky gas of N particles with random initial positions and velocities, moving deterministically, and forming aggregates when they collide. We obtain a closed formula for the stationary measure of the system which allows us to analyze some remarkable features of the final `fan' state. In particular, we identify universal properties which are independent of the initial position and velocity distributions of the particles. We study cluster distributions and derive exact results for extreme value statistics (because of correlations these distributions do not belong to the Gumbel-Frechet-Weibull universality classes). We also derive the energy distribution in the final state. This model generates dynamically many different scales and can be viewed as one of the simplest exactly solvable model of N-body dissipative dynamics.

cond-mat.stat-mech↗

arXiv2008

Non-equilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis

We study the stochastic dynamics of growth and shrinkage of single actin filaments or microtubules taking into account insertion, removal, and ATP/GTP hydrolysis of subunits. The resulting phase diagram contains three different phases: a rapidly growing phase, an intermediate phase and a bound phase. We analyze all these phases, with an emphasis on the bound phase. We also discuss how hydrolysis affects force-velocity curves. The bound phase shows features of dynamic instability, which we characterize in terms of the time needed for the ATP/GTP cap to disappear as well as the time needed for the filament to reach a length of zero, i.e., (to collapse) for the first time. We obtain exact expressions for all these quantities, which we test using Monte Carlo simulations.

cond-mat.soft↗

arXiv2008

Asymptotic localization of stationary states in the nonlinear Schroedinger equation

The mapping of the Nonlinear Schroedinger Equation with a random potential on the Fokker-Planck equation is used to calculate the localization length of its stationary states. The asymptotic growth rates of the moments of the wave function and its derivative for the linear Schroedinger Equation in a random potential are computed analytically and resummation is used to obtain the corresponding growth rate for the nonlinear Schroedinger equation and the localization length of the stationary states.

cond-mat.stat-mech↗

arXiv2008

Stochastic bifurcations: a perturbative study

We study a noise-induced bifurcation in the vicinity of the threshold by using a perturbative expansion of the order parameter, called the Poincaré-Lindstedt expansion. Each term of this series becomes divergent in the long time limit if the power spectrum of the noise does not vanish at zero frequency. These divergencies have a physical consequence: they modify the scaling of all the moments of the order parameter near the threshold and lead to a multifractal behaviour. We derive this anomalous scaling behaviour analytically by a resummation of the Poincaré-Lindstedt series and show that the usual, deterministic, scalings are recovered when the noise has a low frequency cut-off. Our analysis reconciles apparently contradictory results found in the literature.

nlin.CD↗

arXiv2008

Matrix representation of the stationary measure for the multispecies TASEP

In this work we construct the stationary measure of the N species totally asymmetric simple exclusion process in a matrix product formulation. We make the connection between the matrix product formulation and the queueing theory picture of Ferrari and Martin. In particular, in the standard representation, the matrices act on the space of queue lengths. For N >2 the matrices in fact become tensor products of elements of quadratic algebras. This enables us to give a purely algebraic proof of the stationary measure which we present for N =3.

math.PR↗

arXiv2008

Current Fluctuations in the exclusion process and Bethe Ansatz

We use the Bethe Ansatz to derive analytical expressions for the current statistics in the asymmetric exclusion process with both forward and backward jumps. The Bethe equations are highly coupled and this fact has impeded their use to derive exact results for finite systems. We overcome this technical difficulty by a reformulation of the Bethe equations into a one variable polynomial problem, akin to the functional Bethe Ansatz. The perturbative solution of this equation leads to the cumulants of the current. We calculate here the first two orders and derive exact formulae for the mean value of the current and its fluctuations.

cond-mat.stat-mech↗