arXiv subjects

Kirstine Berg-Sorensen

Publications and source records attributed to Kirstine Berg-Sorensen.

6 recordsLinked to original sources

arXiv2023

Charge stability and charge-state-based spin readout of shallow nitrogen-vacancy centers in diamond

Spin-based applications of the negatively charged nitrogen-vacancy (NV) center in diamonds require efficient spin readout. One approach is the spin-to-charge conversion (SCC), relying on mapping the spin states onto the neutral (NV$^0$) and negative (NV$^-$) charge states followed by a subsequent charge readout. With high charge-state stability, SCC enables extended measurement times, increasing precision and minimizing noise in the readout compared to the commonly used fluorescence detection. Nano-scale sensing applications, however, require shallow NV centers within a few $\si{\nano \meter}$ distance from the surface where surface related effects might degrade the NV charge state. In this article, we investigate the charge state initialization and stability of single NV centers implanted $\approx \SI{5}{\nano \meter}$ below the surface of a flat diamond plate. We demonstrate the SCC protocol on four shallow NV centers suitable for nano-scale sensing, obtaining a reduced readout noise of 5--6 times the spin-projection noise limit. We investigate the general applicability of SCC for shallow NV centers and observe a correlation between NV charge-state stability and readout noise. Coating the diamond with glycerol improves both charge initialization and stability. Our results reveal the influence of the surface-related charge environment on the NV charge properties and motivate further investigations to functionalize the diamond surface with glycerol or other materials for charge-state stabilization and efficient spin-state readout of shallow NV centers suitable for nano-scale sensing.

cond-mat.mes-hall↗

arXiv2020

Detection of biological signals from a live mammalian muscle using a diamond quantum sensor

The ability to perform noninvasive, non-contact measurements of electric signals produced by action potentials is essential in biomedicine. A key method to do this is to remotely sense signals by the magnetic field they induce. Existing methods for magnetic field sensing of mammalian tissue, used in techniques such as magnetoencephalography of the brain, require cryogenically cooled superconducting detectors. These have many disadvantages in terms of high cost, flexibility and limited portability as well as poor spatial and temporal resolution. In this work we demonstrate an alternative technique for detecting magnetic fields generated by the current from action potentials in living tissue using nitrogen vacancy centres in diamond. With 50pT/$\sqrt{Hz}$ sensitivity, we show the first measurements of sensing from mammalian tissue with a diamond sensor using mouse muscle optogenetically activated with blue light. We show these measurements can be performed in an ordinary, unshielded lab environment and that the signal can be easily recovered by digital signal processing techniques.

physics.bio-ph↗

arXiv2011

In vivo anomalous diffusion and weak ergodicity breaking of lipid granules

Combining extensive single particle tracking microscopy data of endogenous lipid granules in living fission yeast cells with analytical results we show evidence for anomalous diffusion and weak ergodicity breaking. Namely we demonstrate that at short times the granules perform subdiffusion according to the laws of continuous time random walk theory. The associated violation of ergodicity leads to a characteristic turnover between two scaling regimes of the time averaged mean squared displacement. At longer times the granule motion is consistent with fractional Brownian motion.

cond-mat.stat-mech↗

arXiv2006

Brownian Motion after Einstein: Some new applications and new experiments

The first half of this chapter describes the development in mathematical models of Brownian motion after Einstein's seminal papers and current applications to optical tweezers. This instrument of choice among single-molecule biophysicists is also an instrument of precision that requires an understanding of Brownian motion beyond Einstein's. This is illustrated with some applications, current and potential, and it is shown how addition of a controlled forced motion on the nano-scale of the tweezed object's thermal motion can improve the calibration of the instrument in general, and make it possible also in complex surroundings. The second half of the present chapter, starting with Sect. 9, describes the co-evolution of biological motility models with models of Brownian motion, including very recent results for how to derive cell-type-specific motility models from experimental cell trajectories.

physics.bio-ph↗

arXiv2006

Power Spectrum Analysis for Optical Tweezers, II: Laser Wavelength Dependence of Parasitic Filtering, and how to Achieve High Band-Width

In a typical optical tweezers detection system, the position of a trapped object is determined from laser light impinging on a quadrant photodiode. When the laser is infrared and the photodiode is of silicon, they can act together as an unintended low-pass filter. This parasitic effect is due to the high transparency of silicon to near-infrared light. A simple model that accounts for this phenomenon (Berg-Sorensen et al., J. Appl. Phys., 93, 3167-3176 (2003)) is here solved for frequencies up to 100 kHz, and for laser wavelengths between 750 and 1064 nm. The solution is applied to experimental data in the same range, and is demonstrated to give this detection system of optical tweezers a bandwidth, accuracy, and precision that is limited only by the data acquisition board's band-width and bandpass ripples, here 96.7 kHz, resp. 0.005 dB.

physics.ins-det↗

arXiv2006

Stepwise bending of DNA by a single TATA-box Binding Protein

The TATA-box Binding Protein (TBP) is required by all three eukaryotic RNA polymerases for the initiation of transcription from most promoters. TBP recognizes, binds to, and bends promoter sequences called ``TATA-boxes'' in the DNA. We present results from the study of individual Saccharomyces cerevisia TBPs interacting with single DNA molecules containing a TATA-box. Using video microscopy, we observed the Brownian motion of beads tethered by short surface-bound DNA. When TBP binds to and bends the DNA, the conformation of the DNA changes and the amplitude of Brownian motion of the tethered bead is reduced compared to that of unbent DNA. We detected individual binding and dissociation events and derived kinetic parameters for the process. Dissociation was induced by increasing the salt concentration or by directly pulling on the tethered bead using optical tweezers. In addition to the well-defined free and bound classes of Brownian motion, we observed another two classes of motion. These extra classes were identified with intermediate states on a three-step, linear binding pathway. Biological implications of the intermediate states are discussed.

physics.bio-ph↗