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Klaus F. Kofoed

Publications and source records attributed to Klaus F. Kofoed.

2 recordsLinked to original sources

ImageCAS-X: a dataset and benchmark for coronary artery segmentation and centerline extraction in coronary CT angiography

Accurate segmentation of the coronary vessel lumen is a prerequisite for quantitative assessment of atherosclerotic plaque and perivascular adipose tissue in coronary computed tomography angiography (CCTA). Cardiologists rely on semi-automated methods for this task because manual vessel tracing and segmentation are labour-intensive. Although many automated methods have been proposed, their validation remains limited by the lack of large, high-quality publicly available datasets. We provide a new dataset of voxel-wise annotations of the vessel lumen and coronary segments, alongside centerlines, and mesh surfaces for 800 scans from the publicly available ImageCAS dataset. Using this dataset, we benchmark established lumen segmentation methods against inter-observer variability, stratifying performance by disease, image quality, coronary dominance, coronary segment, vessel diameter, and lumen attenuation. These labels allow segmentation accuracy to be described in anatomical and clinical context rather than reported as a single aggregate score. The dataset supports the development and validation of methods for lumen segmentation, plaque and perivascular quantification, and haemodynamic modelling.

cs.CV

A public cardiac CT dataset featuring the left atrial appendage

Despite the success of advanced segmentation frameworks such as TotalSegmentator (TS), accurate segmentations of the left atrial appendage (LAA), coronary arteries (CAs), and pulmonary veins (PVs) remain a significant challenge in medical imaging. In this work, we present the first open-source, anatomically coherent dataset of curated, high-resolution segmentations for these structures, supplemented with whole-heart labels produced by TS on the publicly available ImageCAS dataset consisting of 1000 cardiac computed tomography angiography (CCTA) scans. One purpose of the data set is to foster novel approaches to the analysis of LAA morphology. LAA segmentations on ImageCAS were generated using a state-of-the-art segmentation framework developed specifically for high resolution LAA segmentation. We trained the network on a large private dataset with manual annotations provided by medical readers guided by a trained cardiologist and transferred the model to ImageCAS data. CA labels were improved from the original ImageCAS annotations, while PV segmentations were refined from TS outputs. In addition, we provide a list of scans from ImageCAS that contains common data flaws such as step artefacts, LAAs extending beyond the scanner's field of view, and other types of data defects.

cs.CV