arXiv subjects

Konstantinos Perrakis

Publications and source records attributed to Konstantinos Perrakis.

6 recordsLinked to original sources

arXiv2024

Bayesian Cluster Weighted Gaussian Models

We introduce a novel class of Bayesian mixtures for normal linear regression models which incorporates a further Gaussian random component for the distribution of the predictor variables. The proposed cluster-weighted model aims to encompass potential heterogeneity in the distribution of the response variable as well as in the multivariate distribution of the covariates for detecting signals relevant to the underlying latent structure. Of particular interest are potential signals originating from: (i) the linear predictor structures of the regression models and (ii) the covariance structures of the covariates. We model these two components using a lasso shrinkage prior for the regression coefficients and a graphical-lasso shrinkage prior for the covariance matrices. A fully Bayesian approach is followed for estimating the number of clusters, by treating the number of mixture components as random and implementing a trans-dimensional telescoping sampler. Alternative Bayesian approaches based on overfitting mixture models or using information criteria to select the number of components are also considered. The proposed method is compared against EM type implementation, mixtures of regressions and mixtures of experts. The method is illustrated using a set of simulation studies and a biomedical dataset.

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arXiv2022

Regularized joint mixture models

Regularized regression models are well studied and, under appropriate conditions, offer fast and statistically interpretable results. However, large data in many applications are heterogeneous in the sense of harboring distributional differences between latent groups. Then, the assumption that the conditional distribution of response Y given features X is the same for all samples may not hold. Furthermore, in scientific applications, the covariance structure of the features may contain important signals and its learning is also affected by latent group structure. We propose a class of mixture models for paired data (X, Y) that couples together the distribution of X (using sparse graphical models) and the conditional Y | X (using sparse regression models). The regression and graphical models are specific to the latent groups and model parameters are estimated jointly (hence the name "regularized joint mixtures"). This allows signals in either or both of the feature distribution and regression model to inform learning of latent structure and provides automatic control of confounding by such structure. Estimation is handled via an expectation-maximization algorithm, whose convergence is established theoretically. We illustrate the key ideas via empirical examples. An R package is available at https://github.com/k-perrakis/regjmix.

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arXiv2020

Bayesian inference for transportation origin-destination matrices: the Poisson-inverse Gaussian and other Poisson mixtures

In this paper we present Poisson mixture approaches for origin-destination (OD) modeling in transportation analysis. We introduce covariate-based models which incorporate different transport modeling phases and also allow for direct probabilistic inference on link traffic based on Bayesian predictions. Emphasis is placed on the Poisson-inverse Gaussian as an alternative to the commonly-used Poisson-gamma and Poisson-lognormal models. We present a first full Bayesian formulation and demonstrate that the Poisson-inverse Gaussian is particularly suited for OD analysis due to desirable marginal and hierarchical properties. In addition, the integrated nested Laplace approximation (INLA) is considered as an alternative to Markov chain Monte Carlo and the two methodologies are compared under specific modeling assumptions. The case study is based on 2001 Belgian census data and focuses on a large, sparsely-distributed OD matrix containing trip information for 308 Flemish municipalities.

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arXiv2019

Variations of Power-Expected-Posterior Priors in Normal Regression Models

The power-expected-posterior (PEP) prior is an objective prior for Gaussian linear models, which leads to consistent model selection inference, under the M-closed scenario, and tends to favor parsimonious models. Recently, two new forms of the PEP prior were proposed which generalize its applicability to a wider range of models. The properties of these two PEP variants within the context of the normal linear model are examined thoroughly, focusing on the prior dispersion and on the consistency of the induced model selection procedure. Results show that both PEP variants have larger variances than the unit-information g-prior and that they are M-closed consistent as the limiting behavior of the corresponding marginal likelihoods matches that of the BIC. The consistency under the M-open case, using three different model misspecification scenarios is further investigated.

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arXiv2019

Scalable Bayesian regression in high dimensions with multiple data sources

Applications of high-dimensional regression often involve multiple sources or types of covariates. We propose methodology for this setting, emphasizing the "wide data" regime with large total dimensionality p and sample size n<<p. We focus on a flexible ridge-type prior with shrinkage levels that are specific to each data type or source and that are set automatically by empirical Bayes. All estimation, including setting of shrinkage levels, is formulated mainly in terms of inner product matrices of size n x n. This renders computation efficient in the wide data regime and allows scaling to problems with millions of features. Furthermore, the proposed procedures are free of user-set tuning parameters. We show how sparsity can be achieved by post-processing of the Bayesian output via constrained minimization of a certain Kullback-Leibler divergence. This yields sparse solutions with adaptive, source-specific shrinkage, including a closed-form variant that scales to very large p. We present empirical results from a simulation study based on real data and a case study in Alzheimer's disease involving millions of features and multiple data sources.

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arXiv2017

Power-Expected-Posterior Priors for Generalized Linear Models

The power-expected-posterior (PEP) prior provides an objective, automatic, consistent and parsimonious model selection procedure. At the same time it resolves the conceptual and computational problems due to the use of imaginary data. Namely, (i) it dispenses with the need to select and average across all possible minimal imaginary samples, and (ii) it diminishes the effect that the imaginary data have upon the posterior distribution. These attributes allow for large sample approximations, when needed, in order to reduce the computational burden under more complex models. In this work we generalize the applicability of the PEP methodology, focusing on the framework of generalized linear models (GLMs), by introducing two new PEP definitions which are in effect applicable to any general model setting. Hyper-prior extensions for the power parameter that regulates the contribution of the imaginary data are introduced. We further study the validity of the predictive matching and of the model selection consistency, providing analytical proofs for the former and empirical evidence supporting the latter. For estimation of posterior model and inclusion probabilities we introduce a tuning-free Gibbs-based variable selection sampler. Several simulation scenarios and one real life example are considered in order to evaluate the performance of the proposed methods compared to other commonly used approaches based on mixtures of g-priors. Results indicate that the GLM-PEP priors are more effective in the identification of sparse and parsimonious model formulations.

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