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Kripa Gowrishankar

Publications and source records attributed to Kripa Gowrishankar.

2 recordsLinked to original sources

Active remodeling of chromatin and implications for in-vivo folding

Recent high resolution experiments have provided a quantitative description of the statistical properties of interphase chromatin at large scales. These findings have stimulated a search for generic physical interactions that give rise to such specific statistical conformations. Here, we show that an active chromatin model of in-vivo folding, based on the interplay between polymer elasticity, confinement, topological constraints and active stresses arising from the (un)binding of ATP-dependent chromatin-remodeling proteins gives rise to steady state conformations consistent with these experiments. Our results lead us to conjecture that the chromatin conformation resulting from this active folding optimizes information storage by co-locating gene loci which share transcription resources.

physics.bio-ph

Nonequilibrium phase transitions in active contractile polar filaments

We study the patterning and fluctuations of a collection of active contractile polar filaments on a two dimensional substrate, using a continuum description in the presence of athermal noise, parameterised by an active temperature $T_A$. The steady states generically consist of arrays of inward pointing asters and show a continuous transition from a moving aster street to a stationary aster lattice. In contrast to its equilibrium counterpart, this active crystal shows true long range order at low $T_A$. On increasing $T_A$, the asters remodel with a distribution of lifetimes; concomitantly we find novel phase transitions characterised by polar and bond-orientational order.

cond-mat.soft