arXiv subjects

Krishna P. Ramachandran

Publications and source records attributed to Krishna P. Ramachandran.

2 recordsLinked to original sources

arXiv2026

Optimal information transmission in a sequential model for cell division

In proliferating cell populations, adaptive changes to biochemical reactions can change a cell's division time, which in turn can change the population size. However, biochemical reactions are subject to noise, and therefore the conditions for optimal information transmission from the molecular to the population scale are poorly understood. Here, we model cell proliferation as a Bellman-Harris branching process with age-dependent division times. We identify a class of division time distributions, built from a series of Markovian steps, for which the population size distribution at all times is hierarchically calculable. We use this feature to characterize the amount of influence that a given reaction step has on the population size via the mutual information. We find that information transmission is optimal for a characteristic number of steps until division: too few and the population size is unpredictable; too many and any given step has vanishing influence on the population size. Our work reveals the potential tradeoffs involved in adaptive decision making at the sub-cellular, cellular and population scales.

physics.bio-ph↗

arXiv2025

Near-critical gene expression in embryonic boundary precision

Embryonic development relies on the formation of sharp, precise gene expression boundaries. In the fruit fly Drosophila melanogaster, boundary formation has been proposed to occur at a dynamical critical point. Yet, in the paradigmatic case of the hunchback (hb) gene, evidence suggests that boundary formation occurs in a bistable regime, not at the dynamical critical point. We develop a minimal model for hb expression and identify a single parameter that tunes the system from its monostable regime to its bistable regime, crossing the critical point in between. We find that boundary precision is maximized when the system is weakly bistable--near, but not at, the critical point--optimally negotiating the tradeoff between two key effects of bistability: sharpening the boundary and amplifying its noise. Incorporating the diffusion of Hb proteins into our model, we show that boundary precision is maximized simultaneously at an optimal degree of bistability and an optimal diffusion strength. Our work elucidates design principles of precise boundary formation and has general implications for pattern formation in multicellular systems.

physics.bio-ph↗