arXiv subjects

Krishna S. Nayak

Publications and source records attributed to Krishna S. Nayak.

8 recordsLinked to original sources

arXiv2026

Feasibility of simultaneous EEG-fMRI at 0.55 T: Recording, Denoising, and Functional Mapping

Simultaneous recording of electroencephalography (EEG) and functional MRI (fMRI) can provide a more complete view of brain function by merging high temporal and spatial resolutions. This proof-of-concept study presents initial evidence for the feasibility of simultaneous EEG-fMRI at 0.55T in a visual task. We characterize the gradient and ballistocardiogram (BCG) artifacts inherent to this environment and demonstrate that the lower field strength suggests a reduction in the magnitude of the BCG artifact compared to high-field (1.5T, 3T, 7T) systems. This reduction shows promise for facilitating effective denoising while preserving signal integrity. Furthermore, we tested a multimodal integration pipeline that uses the EEG power envelope to compute a predictor of the hemodynamic BOLD response, demonstrating the potential for EEG-based estimation of neurovascular coupling in this environment. We demonstrate that combined EEG-fMRI at 0.55T is feasible and represents a promising environment for multimodal neuroimaging.

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arXiv2026

An Approach to Simultaneous Acquisition of Real-Time MRI Video, EEG, and Surface EMG for Articulatory, Brain, and Muscle Activity During Speech Production

Speech production is a complex process spanning neural planning, motor control, muscle activation, and articulatory kinematics. While the acoustic speech signal is the most accessible product of the speech production act, it does not directly reveal its causal neurophysiological substrates. We present the first simultaneous acquisition of real-time (dynamic) MRI, EEG, and surface EMG, capturing several key aspects of the speech production chain: brain signals, muscle activations, and articulatory movements. This multimodal acquisition paradigm presents substantial technical challenges, including MRI-induced electromagnetic interference and myogenic artifacts. To mitigate these, we introduce an artifact suppression pipeline tailored to this tri-modal setting. Once fully developed, this framework is poised to offer an unprecedented window into speech neuroscience and insights leading to brain-computer interface advances. The source code and data are available.

eess.AS↗

arXiv2025

A Feasibility Study of Task-Based fMRI at 0.55 T

0.55T MRI offers advantages compared to conventional field strengths, including reduced susceptibility artifacts and better compatibility with simultaneous EEG recordings. However, reliable task-based fMRI at 0.55T has not been significantly demonstrated. In this study, we establish a robust task-based fMRI protocol and analysis pipeline at 0.55T that achieves full brain coverage and results comparable to what is expected for activation extent and location. We attempted fMRI at 0.55T by combining EPI acquisition with custom analysis techniques. Finger-tapping and visual tasks were used, comparing 5- and 10-minute runs to enhance activation detection. The results show significant activations, demonstrating that high-quality task-based fMRI is achievable at 0.55T in single subjects. This study demonstrates that reliable task-based fMRI is feasible on 0.55T scanners, potentially broadening functional neuroimaging access in clinical and research settings where high-field MRI is unavailable or impractical, supporting broader diagnostic and research applications.

eess.IV↗

arXiv2021

A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images

Real-time magnetic resonance imaging (RT-MRI) of human speech production is enabling significant advances in speech science, linguistics, bio-inspired speech technology development, and clinical applications. Easy access to RT-MRI is however limited, and comprehensive datasets with broad access are needed to catalyze research across numerous domains. The imaging of the rapidly moving articulators and dynamic airway shaping during speech demands high spatio-temporal resolution and robust reconstruction methods. Further, while reconstructed images have been published, to-date there is no open dataset providing raw multi-coil RT-MRI data from an optimized speech production experimental setup. Such datasets could enable new and improved methods for dynamic image reconstruction, artifact correction, feature extraction, and direct extraction of linguistically-relevant biomarkers. The present dataset offers a unique corpus of 2D sagittal-view RT-MRI videos along with synchronized audio for 75 subjects performing linguistically motivated speech tasks, alongside the corresponding first-ever public domain raw RT-MRI data. The dataset also includes 3D volumetric vocal tract MRI during sustained speech sounds and high-resolution static anatomical T2-weighted upper airway MRI for each subject.

eess.SP↗

arXiv2021

Attention-gated convolutional neural networks for off-resonance correction of spiral real-time MRI

Spiral acquisitions are preferred in real-time MRI because of their efficiency, which has made it possible to capture vocal tract dynamics during natural speech. A fundamental limitation of spirals is blurring and signal loss due to off-resonance, which degrades image quality at air-tissue boundaries. Here, we present a new CNN-based off-resonance correction method that incorporates an attention-gate mechanism. This leverages spatial and channel relationships of filtered outputs and improves the expressiveness of the networks. We demonstrate improved performance with the attention-gate, on 1.5 Tesla spiral speech RT-MRI, compared to existing off-resonance correction methods.

eess.IV↗

arXiv2020

Robust Autocalibrated Structured Low-Rank EPI Ghost Correction

Purpose: We propose and evaluate a new structured low-rank method for EPI ghost correction called Robust Autocalibrated LORAKS (RAC-LORAKS). The method can be used to suppress EPI ghosts arising from the differences between different readout gradient polarities and/or the differences between different shots. It does not require conventional EPI navigator signals, and is robust to imperfect autocalibration data. Methods: Autocalibrated LORAKS is a previous structured low-rank method for EPI ghost correction that uses GRAPPA-type autocalibration data to enable high-quality ghost correction. This method works well when the autocalibration data is pristine, but performance degrades substantially when the autocalibration information is imperfect. RAC-LORAKS generalizes Autocalibrated LORAKS in two ways. First, it does not completely trust the information from autocalibration data, and instead considers the autocalibration and EPI data simultaneously when estimating low-rank matrix structure. And second, it uses complementary information from the autocalibration data to improve EPI reconstruction in a multi-contrast joint reconstruction framework. RAC-LORAKS is evaluated using simulations and in vivo data, including comparisons to state-of-the-art methods. Results: RAC-LORAKS is demonstrated to have good ghost elimination performance compared to state-of-the-art methods in several complicated EPI acquisition scenarios (including gradient-echo brain imaging, diffusion-encoded brain imaging, and cardiac imaging). Conclusion: RAC-LORAKS provides effective suppression of EPI ghosts and is robust to imperfect autocalibration data.

eess.IV↗

arXiv2019

Accuracy, Uncertainty, and Adaptability of Automatic Myocardial ASL Segmentation using Deep CNN

PURPOSE: To apply deep CNN to the segmentation task in myocardial arterial spin labeled (ASL) perfusion imaging and to develop methods that measure uncertainty and that adapt the CNN model to a specific false positive vs. false negative tradeoff. METHODS: The Monte Carlo dropout (MCD) U-Net was trained on data from 22 subjects and tested on data from 6 heart transplant recipients. Manual segmentation and regional myocardial blood flow (MBF) were available for comparison. We consider two global uncertainty measures, named Dice Uncertainty and MCD Uncertainty, which were calculated with and without the use of manual segmentation, respectively. Tversky loss function with a hyperparameter $β$ was used to adapt the model to a specific false positive vs. false negative tradeoff. RESULTS: The MCD U-Net achieved Dice coefficient of mean(std) = 0.91(0.04) on the test set. MBF measured using automatic segmentations was highly correlated to that measured using the manual segmentation ($R^2$ = 0.96). Dice Uncertainty and MCD Uncertainty were in good agreement ($R^2$ = 0.64). As $β$ increased, the false positive rate systematically decreased and false negative rate systematically increased. CONCLUSION: We demonstrate the feasibility of deep CNN for automatic segmentation of myocardial ASL, with good accuracy. We also introduce two simple methods for assessing model uncertainty. Finally, we demonstrate the ability to adapt the CNN model to a specific false positive vs. false negative tradeoff. These findings are directly relevant to automatic segmentation in quantitative cardiac MRI and are broadly applicable to automatic segmentation problems in diagnostic imaging.

cs.CV↗

arXiv2017

Tracer Kinetic Models as Temporal Constraints during DCE-MRI reconstruction

Purpose: To apply tracer kinetic models as temporal constraints during reconstruction of under-sampled dynamic contrast enhanced (DCE) MRI. Methods: A library of concentration v.s time profiles is simulated for a range of physiological kinetic parameters. The library is reduced to a dictionary of temporal bases, where each profile is approximated by a sparse linear combination of the bases. Image reconstruction is formulated as estimation of concentration profiles and sparse model coefficients with a fixed sparsity level. Simulations are performed to evaluate modeling error, and error statistics in kinetic parameter estimation in presence of noise. Retrospective under-sampling experiments are performed on a brain tumor DCE digital reference object (DRO) at different signal to noise levels (SNR=20-40) at (k-t) space under-sampling factor (R=20), and 12 brain tumor in- vivo 3T datasets at (R=20-40). The approach is compared against an existing compressed sensing based temporal finite-difference (tFD) reconstruction approach. Results: Simulations demonstrate that sparsity levels of 2 and 3 model the library profiles from the Patlak and extended Tofts-Kety (ETK) models, respectively. Noise sensitivity analysis showed equivalent kinetic parameter estimation error statistics from noisy concentration profiles, and model approximated profiles. DRO based experiments showed good fidelity in recovery of kinetic maps from 20-fold under- sampled data at SNRs between 10-30. In-vivo experiments demonstrated reduced bias and uncertainty in kinetic mapping with the proposed approach compared to tFD at R>=20. Conclusions: Tracer kinetic models can be applied as temporal constraints during DCE-MRI reconstruction, enabling more accurate reconstruction from under- sampled data. The approach is flexible, can use several kinetic models, and does not require tuning of regularization parameters.

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