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Kristina M. Herman

Publications and source records attributed to Kristina M. Herman.

2 recordsLinked to original sources

Efficient first-principles modeling of complex molecular crystals at sub-chemical accuracy

Molecules can form myriad crystalline polymorphs, each with distinct properties affecting their performance across diverse applications, from pharmaceuticals to functional materials and more. Predicting the thermodynamically most stable polymorph from first principles remains a formidable challenge. It requires methods that scale to large, technologically-relevant molecules while achieving very high accuracy (below 1 kJ/mol) on relative lattice energies. Such accuracy, often termed sub-chemical accuracy, is generally beyond the reach of the workhorse density functional theory (DFT). In this work, we introduce a framework, combining advances in correlated wavefunction theory (cWFT) and the many-body expansion, to deliver accurate, cost-effective predictions of complex molecular crystals. For 23 organic molecules and 13 ice polymorphs, we predict crystal lattice energies to within experimental uncertainties at costs comparable to hybrid DFT, while being several orders of magnitude more efficient than previous cWFT approaches. We extend this approach to a set of large, drug-like molecules including axitinib and ROY, previously inaccessible to cWFT and where DFT is insufficient, achieving sub-chemical accuracy on the relative energies between challenging polymorphs. With the reference data generated throughout this work, we have been able to further parametrize a DFT functional with unprecedented accuracy aligning with our predictions. This cWFT framework as well as DFT functional are made openly available, providing new ranking tools to facilitate efficient high-throughput screening of molecular crystal polymorphs.

cond-mat.mtrl-sci

Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators

The demonstrated success of transfer learning has popularized approaches that involve pretraining models from massive data sources and subsequent finetuning towards a specific task. While such approaches have become the norm in fields such as natural language processing, implementation and evaluation of transfer learning approaches for chemistry are in the early stages. In this work, we demonstrate finetuning for downstream tasks on a graph neural network (GNN) trained over a molecular database containing 2.7 million water clusters. The use of Graphcore IPUs as an AI accelerator for training molecular GNNs reduces training time from a reported 2.7 days on 0.5M clusters to 1.2 hours on 2.7M clusters. Finetuning the pretrained model for downstream tasks of molecular dynamics and transfer to a different potential energy surface took only 8.3 hours and 28 minutes, respectively, on a single GPU.

cs.LG