arXiv subjects

Kumpei Shiraishi

Publications and source records attributed to Kumpei Shiraishi.

12 recordsLinked to original sources

arXiv2026

Dynamic heterogeneity in sodium silicate melts via machine-learning potential

We present a comprehensive characterisation of dynamic heterogeneity in sodium silicate melts using molecular dynamics simulation with machine-learning potentials. By studying sodium disilicate, tetrasilicate, and hexasilicate melts across a range of temperatures, mean squared displacement and a time-correlation function computed up to the nanosecond timescale provide a detailed account of how spatial mobility disparities emerge in a realistic multicomponent oxide glass. Within these timescales, the self-part of the van Hove function for sodium displays a bimodality, demonstrating that alkali transport is mediated by discrete displacement events consistent with a hopping mechanism. This distinct hopping allows sodium ions to decouple from the sluggish relaxation of the silicate matrix. Furthermore, evaluation of the non-Gaussian parameter reveals that, although all constituent species exhibit dynamic heterogeneity, the non-Gaussian behaviour is most pronounced for oxygen atoms. This trend reflects the intermittency of structural rearrangements, where framework atoms undergo rare and stochastic events compared to the frequent displacements of mobile ions. Our findings elucidate the microscopic mechanism of ion transport and its connection to dynamic heterogeneity in silicate melts, offering a new avenue to study fundamental glassy physics in realistic vitreous materials.

cond-mat.soft↗

arXiv2026

Critical fluctuations of elastic moduli in jammed solids

We investigate sample-to-sample fluctuations of the shear modulus in ensembles of particle packings near the jamming transition. Unlike the average modulus, which exhibits distinct scaling behaviours depending on the interparticle potential, the fluctuations obey a critical exponent that is independent of the potential. Furthermore, this scaling behaviour has been confirmed in two-dimensional packings, indicating that it holds regardless of spatial dimension. Using this scaling law, we discuss the relationship predicted by heterogeneous-elasticity theory between elastic-modulus fluctuations and the Rayleigh scattering of sound waves across different pressures. Our numerical results provide a useful foundation for developing a unified theoretical description of the jamming critical phenomenon.

cond-mat.soft↗

arXiv2025

Topological descriptor for interpretable thermal transport prediction in amorphous graphene

Understanding and predicting thermal transport in disordered materials remains a significant challenge due to the absence of periodicity and the complex nature of medium-range structural motifs. In this work, we investigate amorphous graphene and demonstrate that persistent homology, a topological data analysis technique, can serve as a physically interpretable structural descriptor for predicting thermal conductivity. We first show that ridge regression using persistent homology descriptors achieves high prediction accuracy. To gain physical insight into the prediction process, we perform inverse analysis by mapping the regression coefficients back onto the persistence diagrams. This reveals that distorted hexagonal and triangular motifs are strongly correlated with reduced thermal conductivity. A further comparison with the spatial distribution of localized vibrational modes supports the physical interpretation that these motifs suppress thermal transport. Our findings highlight that persistent homology not only enables accurate prediction of physical properties but also uncovers meaningful structure-property relationships in two-dimensional amorphous materials. This approach offers a promising framework for interpretable machine-learning models in materials science.

cond-mat.mtrl-sci↗

arXiv2025

Benchmarking thermostat algorithms in molecular dynamics simulations of a binary Lennard-Jones glass-former model

A systematic comparison was carried out to assess the influence of representative thermostat methods in constant-temperature molecular dynamics simulations. The thermostat schemes considered include the Nosé--Hoover thermostat and its chain generalisation, the Bussi velocity rescaling method, and several implementations of the Langevin dynamics. Using a binary Lennard-Jones liquid as a model glass former, we investigated how the sampling of physical observables, such as particle velocities and potential energy, responds to changes in time step across these thermostats. While the Nosé--Hoover chain and Bussi thermostats provide reliable temperature control, a pronounced time-step dependence was observed in the potential energy. Amongst the Langevin methods, the Grønbech-Jensen--Farago scheme provided the most consistent sampling of both temperature and potential energy. Nonetheless, Langevin dynamics typically incurs approximately twice the computational cost due to the overhead of random number generation, and exhibits a systematic decrease in diffusion coefficients with increasing friction. This study presents a broad comparison of thermostat methods using a binary Lennard-Jones glass-former model, offering practical guidance for the choice of thermostats in classical molecular dynamics simulations. These findings provide useful insights for diverse applications, including glass transition, phase separation, and nucleation.

physics.comp-ph↗

arXiv2024

Characterising the slow dynamics of the swap Monte Carlo algorithm

The swap Monte Carlo algorithm introduces non-physical dynamic rules to accelerate the exploration of the configuration space of supercooled liquids. Its success raises deep questions regarding the nature and physical origin of the slow dynamics of dense liquids, and how it is affected by swap moves. We provide a detailed analysis of the slow dynamics generated by the swap Monte Carlo algorithm at very low temperatures in two glass-forming models. We find that the slowing down of the swap dynamics is qualitatively distinct from its local Monte Carlo counterpart, with considerably suppressed dynamic heterogeneity both at single-particle and collective levels. Our results suggest that local kinetic constraints are drastically reduced by swap moves, leading to nearly Gaussian and diffusive dynamics and weakly growing dynamic correlation lengthscales. The comparison between static and dynamic fluctuations shows that swap Monte Carlo is a nearly optimal local equilibrium algorithm, suggesting that further progress should necessarily involve collective or driven algorithms.

cond-mat.soft↗

arXiv2024

Instantaneous normal modes of glass-forming liquids during the athermal relaxation process of the steepest descent algorithm

Understanding glass formation by quenching remains a challenge in soft condensed matter physics. Recent numerical studies on steepest descent dynamics, which is one of the simplest models of quenching, revealed that quenched liquids undergo slow relaxation with a power law towards mechanical equilibrium and that the late stage of this process is governed by local rearrangements of particles. These advances motivate the detailed study of instantaneous normal modes during the relaxation process because the glassy dynamics is considered to be governed by stationary points of the potential energy landscape. Here, we performed a normal mode analysis of configurations during the steepest descent dynamics and found that the dynamics is driven by almost flat directions of the potential energy landscape at long times. These directions correspond to localized modes and we characterized them in terms of their statistics and structure using methods developed in the study of local minima of the potential energy landscape.

cond-mat.soft↗

arXiv2023

Particle pinning as a method to manipulate marginal stability

We study the critical behavior of low-frequency vibrations of packings with pinned particles near the jamming point. Soft modes form a plateau in the density of states and its frequency is controlled by the contact number as the ordinary jamming transition. The spatial structure of these modes is not largely affected by pins. Below the plateau, the non-Debye scaling predicted by mean-field theories and quasi-localized modes breaks down depending on the pinning procedures. We comprehensively explain these behaviors by the impact of pinning operations on the marginal stability of the packings.

cond-mat.soft↗

arXiv2023

Non-phononic density of states of two-dimensional glasses revealed by random pinning

The vibrational density of states of glasses is considerably different from that of crystals. In particular, there exist spatially localized vibrational modes in glasses. The density of states of these non-phononic modes has been observed to follow $g(ω) \propto ω^4$, where $ω$ is the frequency. However, in two-dimensional systems, the abundance of phonons makes it difficult to accurately determine this non-phononic density of states because they are strongly coupled to non-phononic modes and yield strong system-size and preparation-protocol dependencies. In this article, we utilize the random pinning method to suppress phonons and disentangle their coupling with non-phononic modes and successfully calculate their density of states as $g(ω) \propto ω^4$. We also study their localization properties and confirm that low-frequency non-phononic modes in pinned systems are truly localized without far-field contributions. We finally discuss the excess density of states over the Debye value that results from the hybridization of phonons and non-phononic modes.

cond-mat.soft↗

arXiv2022

Johari-Goldstein $β$ relaxation in glassy dynamics originates from two-scale energy landscape

Supercooled liquids undergo complicated structural relaxation processes, which have been a long-standing problem in both experimental and theoretical aspects of condensed matter physics. In particular, past experiments universally observed for many types of molecular liquids that relaxation dynamics separated into two distinct processes at low temperatures. One of the possible interpretations is that this separation originates from the two-scale hierarchical topography of the potential energy landscape; however, it has never been verified. Molecular dynamics simulations are a promising approach to tackle this issue, but we must overcome laborious difficulties. First, we must handle a model of molecular liquids that is computationally demanding compared to simple spherical models, which have been intensively studied but show only a slower process: $α$ relaxation. Second, we must reach a sufficiently low-temperature regime where the two processes become well separated. Here, we handle an asymmetric dimer system that exhibits a faster process: Johari-Goldstein $β$ relaxation. Then, we employ the parallel tempering method to access the low-temperature regime. These laborious efforts enable us to investigate the potential energy landscape in detail and unveil the first direct evidence of the topographic hierarchy that induces the $β$ relaxation. We also successfully characterize the microscopic motions of particles during each relaxation process. Finally, we study the predictive power of low-frequency modes for two relaxation processes. Our results establish for the first time a fundamental and comprehensive understanding of experimentally observed relaxation dynamics in supercooled liquids.

cond-mat.soft↗

arXiv2022

Low-Frequency Vibrational States in Ideal Glasses with Random Pinning

Glasses exhibit spatially localized vibrations in the low-frequency regime. These localized modes emerge below the boson peak frequency $ω_\text{BP}$, and their vibrational densities of state follow $g(ω) \propto ω^4$ ($ω$ is frequency). Here, we attempt to address how the localized vibrations behave through the ideal glass transition. To do this, we employ a random pinning method, which enables us to study the thermodynamic glass transition. We find that the localized vibrations survive even in equilibrium glass states. Remarkably, the localized vibrations still maintain the properties of appearance below $ω_\text{BP}$ and $g(ω) \propto ω^4$. Our results provide important insight into the material properties of ideal glasses.

cond-mat.soft↗

arXiv2020

Mechanical and Vibrational Properties of Three-Dimensional Dimer Packings Near the Jamming Transition

We comprehensively study mechanical and vibrational properties of dimer packings in three-dimensional space with particular attention on critical scaling behaviors near the jamming transition. First, we confirm the dependence of the packing fraction at the transition on the aspect ratio, the isostatic contact number at the transition, and the scaling dependence of the excess contact number on the excess density. Second, we study the elastic moduli, bulk and shear moduli, and establish power-law scaling of them. Finally, we study the vibrational density of states and its characteristic frequency. The vibrational density of states shows two plateaus in the lower- and higher-frequency regions, which are characterized by rotational and translational vibrational modes, respectively. The onset frequency of the lower-frequency plateau scales linearly to the square root of excess density. The scaling laws in the mechanical and vibrational properties are consistent between two- and three-dimensional dimers, and they are identical to those in spheres.

cond-mat.soft↗

arXiv2019

Vibrational properties of two-dimensional dimer packings near the jamming transition

Jammed particulate systems composed of various shapes of particles undergo the jamming transition as they are compressed or decompressed. To date, sphere packings have been extensively studied in many previous works, where isostaticity at the transition and scaling laws with the pressure of various quantities, including the contact number and the vibrational density of states, have been established. Additionally, much attention has been paid to nonspherical packings, and particularly recent work has made progress in understanding ellipsoidal packings. In the present work, we study the dimer packings in two dimensions, which have been much less understood than systems of spheres and ellipsoids. We first study the contact number of dimers near the jamming transition. It turns out that packings of dimers have "rotational rattlers", each of which still has a free rotational motion. After correcting this effect, we show that dimers become isostatic at the jamming, and the excess contact number obeys the same critical law and finite size scaling law as those of spheres. We next study the vibrational properties of dimers near the transition. We find that the vibrational density of states of dimers exhibits two characteristic plateaus that are separated by a peak. The high-frequency plateau is dominated by the translational degree of freedom, while the low-frequency plateau is dominated by the rotational degree of freedom. We establish the critical scaling laws of the characteristic frequencies of the plateaus and the peak near the transition. In addition, we present detailed characterizations of the real space displacement fields of vibrational modes in the translational and rotational plateaus.

cond-mat.soft↗