arXiv subjects

Kun-Ta Wu

Publications and source records attributed to Kun-Ta Wu.

7 recordsLinked to original sources

arXiv2025

Confinement geometry governs the impact of external shear stress on active stress-driven flows in microtubule-kinesin active fluids

Active fluids generate internal active stress and exhibit unique responses to external forces such as superfluidity and self-yielding transitions. However, how confinement geometry influences these responses remains poorly understood. Here, we investigate microtubule-kinesin active fluids under external shear stresses in two geometries. In slab-like confinement (a narrow-gap cavity), external stresses propagated throughout the system, leading to stress competition and a kinematic transition that shifted dynamics from active stress-dominated to shear stress-dominated flow. At the transition, we estimate the active stress to be ~1.5 mPa. Simulation supported that this transition arises from stress competition. In contrast, in ring-like confinement (a toroidal system), external forces acted locally, inducing a mini cavity flow that triggered self-organized reconfiguration rather than direct entrainment. These findings show that the response of active fluids to external forcing depends not only on the magnitude of the applied stress but also on how confinement geometry directs and redistributes that stress, revealing a new approach to controlling active fluid behavior by combining static geometrical design with dynamic external stimuli for real-time modulation of flow patterns. Such control strategies may be applied to microfluidic systems, where external inputs such as micromechanical actuators can dynamically tune active fluid behavior within fixed device geometries, enabling transitions between chaotic and coherent flows for tasks such as mixing, sorting, or directed transport.

cond-mat.soft↗

arXiv2022

Self-mixing in microtubule-kinesin active fluid from nonuniform to uniform distribution of activity

Active fluids have applications in micromixing, but little is known about the mixing kinematics of systems with spatiotemporally-varying activity. To investigate, UV-activated caged ATP was used to activate controlled regions of microtubule-kinesin active fluid and the mixing process was observed with fluorescent tracers and molecular dyes. At low Péclet numbers (diffusive transport), the active-inactive interface progressed toward the inactive area in a diffusion-like manner that was described by a simple model combining diffusion with Michaelis-Menten kinetics. At high Péclet numbers (convective transport), the active-inactive interface progressed in a superdiffusion-like manner that was qualitatively captured by an active-fluid hydrodynamic model coupled to ATP transport. Results showed that active fluid mixing involves complex coupling between distribution of active stress and active transport of ATP and reduces mixing time for suspended components with decreased impact of initial component distribution. This work will inform application of active fluids to promote micromixing in microfluidic devices.

cond-mat.soft↗

arXiv2021

Flow coupling between active and passive fluids across water-oil interfaces

Active fluid droplets surrounded by oil can spontaneously develop circulatory flows. However, the dynamics of the surrounding oil and their influence on the active fluid remain poorly understood. To investigate interactions between the active fluid and the passive oil across their interface, kinesin-driven microtubule-based active fluid droplets were immersed in oil and compressed into a cylinder-like shape. The droplet geometry supported intradroplet circulatory flows, but the circulation was suppressed when the thickness of the oil layer surrounding the droplet decreased. Experiments with tracers and network structure analyses and continuum models based on the dynamics of self-elongating rods demonstrated that the flow transition resulted from flow coupling across the interface between active fluid and oil, with a millimeter-scale coupling length. In addition, two novel millifluidic devices were developed that could trigger and suppress intradroplet circulatory flows in real time: one by changing the thickness of the surrounding oil layer and the other by locally deforming the droplet. This work highlights the role of interfacial dynamics in the active fluid droplet system and shows that circulatory flows within droplets can be affected by millimeter-scale flow coupling across the interface between the active fluid and the oil.

physics.flu-dyn↗

arXiv2021

Effects of confinement on the dynamics and correlation scales in active fluids

We study the influence of solid boundaries on dynamics and structure of active fluids as the height of the container, $z$, changes. Along the varying dimension, the geometry systematically increases, therefore, the confinement ($z$) transits from "strong confinement", to "intermediate confinement" and to "weak confinement" (close to "unconfined"). In horizontal dimensions ($x,y$), the system remains "unconfined". Through tracking the tracers dispersed in the active fluids in three dimensions we observed that activity level, characterized by velocity fluctuations of flow tracers, increases as system size increases. Concomitantly, the velocity-velocity temporal correlation changes from weak correlation to strong positive correlation, indicating "memory" in active flows. We estimate the characteristic size of the flow structure by integrating the velocity-velocity spatial correlation function. The integral increases as confinement becomes weaker and saturates at approximately 400 microns as the system becomes "unconfined". This saturation indicates an intrinsic length scale which, along with the small-scale isotropy, demonstrates the multi-scale nature of this kinesin-driven bundled microtubule system.

cond-mat.soft↗

arXiv2019

Collective dynamics of microtubule-based 3D active fluids from single microtubules

Self-organization of kinesin-driven, microtubule-based 3D active fluids relies on the collective dynamics of single microtubules. However, the connection between macroscopic fluid flows and microscopic motion of microtubules remains unclear. In this work, the motion of single microtubules was characterized by means of 2D gliding assays and compared with the flows of 3D active fluids. While the scales of the two systems differ by 1,000x, both were driven by processive, non-processive or an equal mixture of both molecular motor proteins. To search for the dynamic correlation between both systems, the motor activities were tuned by varying temperature and ATP concentration, and the changes in both systems were compared. Motor processivity played an important role in active fluid flows but only when the fluids were nearly motionless; otherwise, flows were dominated by hydrodynamic resistance controlled by sample size. Furthermore, while the motors' thermal reaction led active fluids to flow faster with increasing temperature, such temperature dependence could be reversed by introducing temperature-varying depletants, emphasizing the potential role of the depletant in designing an active fluid's temperature response. The temperature response of active fluids was nearly immediate (<10 sec). Such a characteristic enables active fluids to be controlled with a temperature switch. Overall, this work not only clarifies the role of temperature in active fluid activity, but also sheds light on the underlying principles of the relationship between the collective dynamics of active fluids and the dynamics of their constituent single microtubules.

cond-mat.soft↗

arXiv2018

Microtubule-based active fluids with improved lifetime, temporal stability and miscibility with passive soft materials

We have developed several distinct model systems of microtubule-based 3D active isotropic fluids and have compared their dynamical and structural properties. The non-equilibrium dynamics of these fluids is powered by three different types of kinesin motors: a processive motor, a non-processive motor, and a motor which is permanently linked to a microtubule backbone. The fourth modification uses specific microtubule crosslinkers to induce bundle formation instead of a non-specific depletant. In comparison to the formerly developed systems, each new active fluid formulation has certain enhanced properties. Firstly, linking motors to the microtubule backbone enhances the fluid lifetime from hours to several days. Furthermore, switching to the non-processive motors significantly increases the temporal stability of the active dynamics, while using specific cross-linkers yields systems that can incorporate other passive soft materials, such as, polymer gels or liquid crystals. These novel developed model systems will significantly aid and improve our ability to quantify diverse phenomena observed in microtubule based active matter.

cond-mat.soft↗

arXiv2017

Transition from turbulent to coherent flows in confined three-dimensional active fluids

Transport of fluid through a pipe is essential for the operation of macroscale machines and microfluidic devices. Conventional fluids only flow in response to external pressure. We demonstrate that an active isotropic fluid, comprised of microtubules and molecular motors, autonomously flows through meter-long three-dimensional channels. We establish control over the magnitude, velocity profile and direction of the self-organized flows, and correlate these to the structure of the extensile microtubule bundles. The inherently three-dimensional transition from bulk-turbulent to confined-coherent flows occurs concomitantly with a transition in the bundle orientational order near the surface, and is controlled by a scale-invariant criterion related to the channel profile. The non-equilibrium transition of confined isotropic active fluids can be used to engineer self-organized soft machines.

cond-mat.soft↗