arXiv subjects

Kurt Binder

Publications and source records attributed to Kurt Binder.

At least 19 recordsLinked to original sources

arXiv2021

Macroscopic rotation of active colloids in a colloid-polymer mixture confined inside a spherical cavity

From studies via Molecular Dynamics simulations, we report results on structure and dynamics in mixtures of active colloids and passive polymers that are confined inside a spherical container with a repulsive boundary. Such systems mimic the presence of bacteria in the background of bio-polymers. All interactions in the fully passive case are chosen in such a way that in equilibrium coexistence between colloid-rich and polymer-rich phases occurs. For most part of the studies the chosen compositions give rise to Janus structure; one side of the sphere is occupied by the colloids and the rest by the polymers. This partially wet situation mimics nearly a neutral wall in the fully passive scenario. Following the introduction of a velocity-aligning activity to the colloids, the shape of the polymer-rich domain changes to that of an ellipsoid, around the long axis of which the colloid-rich domain attains a macroscopic angular momentum. In the steady state, the orientation of this axis evolves via diffusion, implying that the passive domain is set into motion as well by the active particles.

cond-mat.soft↗

arXiv2021

Wetting transitions of polymer solutions: Effects of chain length and chain stiffness

Wetting and drying phenomena are studied for flexible and semiflexible polymer solutions via coarse-grained molecular dynamics simulations and density functional theory calculations. The study is based on the use of Young's equation for the contact angle, determining all relevant surface tensions from the anisotropy of the pressure tensor. The solvent quality (or effective temperature, equivalently) is varied systematically, while all other interactions remain unaltered. For flexible polymers, the wetting transition temperature $T_{\rm w}$ increases monotonically with chain length $N$, while the contact angle at temperatures far below $T_{\rm w}$ is independent of $N$. For semiflexible polymer solutions, $T_{\rm w}$ varies non-monotonically with the persistence length: Initially, $T_{\rm w}$ increases with increasing chain stiffness and reaches a maximum, but then a sudden drop of $T_{\rm w}$ is observed, which is associated with the isotropic-nematic transition of the system.

cond-mat.soft↗

arXiv2020

Entropic Unmixing in Nematic Blends of Semiflexible Polymers

Binary mixtures of semiflexible polymers with the same chain length but different persistence lengths separate into two coexisting different nematic phases when the osmotic pressure of the lyotropic solution is varied. Molecular Dynamics simulations and Density Functional Theory predict phase diagrams either with a triple point, where the isotropic phase coexists with two nematic phases, or a critical point of unmixing within the nematic mixture. The difference in locally preferred bond angles between the constituents drives this unmixing without any attractive interactions between monomers.

cond-mat.soft↗

arXiv2020

When does Wenzel's extension of Young's equation for the contact angle of droplets apply? A density functional study

he contact angle of a liquid droplet on a surface under partial wetting conditions differs for a nanoscopically rough or periodically corrugated surface from its value for a perfectly flat surface. Wenzel's relation attributes this difference simply to the geometric magnification of the surface area (by a factor $r_{\rm w}$), but the validity of this idea is controversial. We elucidate this problem by model calculations for a sinusoidal corrugation of the form $z_{\rm wall}(y) = \Delta\cos(2\pi y/\lambda)$ , for a potential of short range $\sigma_{\rm w}$ acting from the wall on the fluid particles. When the vapor phase is an ideal gas, the change of the wall-vapor surface tension can be computed exactly, and corrections to Wenzel's equation are typically of order $\sigma_{\rm w}\Delta/\lambda^2$. For fixed $r_{\rm w}$ and fixed $\sigma_{\rm w}$ the approach to Wenzel's result with increasing $\lambda$ may be nonmonotonic and this limit often is only reached for $\lambda/\sigma_{\rm w}>30$. For a non-additive binary mixture, density functional theory is used to work out the density profiles of both coexisting phases both for planar and corrugated walls, as well as the corresponding surface tensions. Again, deviations from Wenzel's results of similar magnitude as in the above ideal gas case are predicted. Finally, a crudely simplified description based on the interface Hamiltonian concept is used to interpret corresponding simulation results along similar lines. Wenzel's approach is found to generally hold when $\lambda/\sigma_{\rm w}\gg 1$, $\Delta/\lambda<1$, and conditions avoiding proximity of wetting or filling transitions.

cond-mat.soft↗

arXiv2019

Linear Dimensions of Adsorbed Semiflexible Polymers: What can be learned about their persistence length?

Conformations of partially or fully adsorbed semiflexible polymer chains are studied varying both contour length $L$, chain stiffness, $κ$, and the strength of the adsorption potential over a wide range. Molecular Dynamics simulations show that partially adsorbed chains (with "tails", surface attached "trains" and "loops") are not described by the Kratky-Porod wormlike chain model. The crossover of the persistence length from its three-dimensional value $(\ell_p)$ to the enhanced value in two dimensions $(2\ell_p)$ is analyzed, and excluded volume effects are identified for $L \gg \ell_p$. Consequences for the interpretation of experiments are suggested. We verify the prediction that the adsorption threshold scales as $\ell_p^{-1/3}$.

cond-mat.soft↗

arXiv2019

Phase behavior of flexible and semiflexible polymers in solvents of varying quality

The interplay of nematic order and phase separation in solutions of semiflexible polymers in solvents of variable quality is investigated by density functional theory (DFT) and molecular dynamics (MD) simulations. We studied coarse-grained models, with a bond-angle potential to control chain stiffness, for chain lengths comparable to the persistence length of the chains. We varied both the density of the monomeric units and the effective temperature that controls the quality of the implicit solvent. For very stiff chains only a single transition from an isotropic fluid to a nematic is found, with a phase diagram of "swan-neck" topology. For less stiff chains, however, also unmixing between isotropic fluids of different concentration, ending in a critical point, occurs for temperatures above a triple point. The associated critical behavior is examined in the MD simulations and found compatible with Ising universality. Apart from this critical behavior, DFT calculations agree qualitatively with the MD simulations.

cond-mat.soft↗

arXiv2019

The smectic phase in semiflexible polymer materials: A large scale Molecular Dynamics study

Semiflexible polymers in concentrated lyotropic solution are studied within a bead-spring model by molecular dynamics simulations, focusing on the emergence of a smectic A phase and its properties. We systematically vary the density of the monomeric units for several contour lengths that are taken smaller than the chain persistence length. The difficulties concerning the equilibration of such systems and the choice of appropriate ensemble (constant volume versus constant pressure, where all three linear dimensions of the simulation box can fluctuate independently) are carefully discussed. Using HOOMD-blue on graphics processing units, systems containing more than a million monomeric units are accessible, making it possible to distinguish the order of the phase transitions that occur. While in this model the nematic-smectic transition is continuous, the transition from the smectic phase to a related crystalline structure with true three-dimensional long-range order is clearly of first order. Further, both orientational and positional correlations of monomeric units are studied as well as the order parameters characterizing the nematic, smectic A, and crystalline phases. The analogy between smectic order and one-dimensional harmonic crystals with respect to the behavior of the structure factor is also explored. Finally, the results are put in perspective with pertinent theoretical predictions and possible experiments.

cond-mat.soft↗

arXiv2018

Heterogeneous Nucleation of a Droplet Pinned at a Chemically Inhomogeneous Substrate: A Simulation Study of the Two-dimensional Ising Case

Heterogeneous nucleation is studied by Monte Carlo simulations and phenomenological theory, using the two-dimensional lattice gas model with suitable boundary fields. A chemical inhomogeneity of length b at one boundary favors the liquid phase, while elsewhere the vapor is favored. Switching on the bulk field favoring the liquid, nucleation and growth of the liquid phase starting from the region of the chemical inhomogeneity is analyzed. Three regimes occur: for small fields, the critical droplet radius is so large that a critical droplet having the contact angle required by Young's equation in the region of the chemical inhomogeneity does not yet fit there, since the baseline length of the circle-cut sphere droplet would exceed b. For an intermedium regime of bulk fields, such droplets fit inside the inhomogeneity, and are indeed found in simulations with large enough observation times, but these droplets remain pinned to the chemical inhomogeneity when their baseline has grown to the length b. On general grounds one can predict that the effective contact angle as well as the excess density of the droplets, scaled by b^2, are functions of the product b and the bulk field, but do not depend on both variables separately. For larger fields the droplets nucleated at the chemical inhomogeneity grow to the full system size.

cond-mat.stat-mech↗

arXiv2018

Do the contact angle and line tension of surface-attached droplets depend on the radius of curvature?

Results from Monte Carlo simulations of wall-attached droplets in the three-dimensional Ising lattice gas model and in a symmetric binary Lennard-Jones fluid, confined by antisymmetric walls, are analyzed, with the aim to estimate the dependence of the contact angle $(Θ)$ on the droplet radius $(R)$ of curvature. Sphere-cap shape of the wall-attached droplets is assumed throughout. An approach, based purely on "thermodynamic" observables, e.g., chemical potential, excess density due to the droplet, etc., is used, to avoid ambiguities in the decision which particles belong (or do not belong, respectively) to the droplet. It is found that the results are compatible with a variation $[Θ(R)-Θ_{\infty}] \propto 1/R$, $Θ_{\infty}$ being the contact angle in the thermodynamic limit ($R=\infty$). The possibility to use such results to estimate the excess free energy related to the contact line of the droplet, namely the line tension, at the wall, is discussed. Various problems that hamper this approach and were not fully recognized in previous attempts to extract the line tension are identified. It is also found that the dependence of wall tensions on the difference of chemical potential of the droplet from that at the bulk coexistence provides effectively a change of the contact angle of similar magnitude. The simulation approach yields precise estimates for the excess density due to wall-attached droplets and the corresponding free energy excess, relative to a system without a droplet at the same chemical potential. It is shown that this information suffices to estimate nucleation barriers, not affected by ambiguities on droplet shape, contact angle and line tension.

cond-mat.soft↗

arXiv2017

Critical behavior of active Brownian particles

We study active Brownian particles as a paradigm for genuine non-equilibrium phase transitions. Access to the critical point in computer simulations is obstructed by the fact that the density is conserved. We propose a modification of sampling finite-size fluctuations and successfully test this method for the 2D Ising model. Using this model allows us to determine accurately the critical point of two dimensional active Brownian particles at $\text{Pe}_{\text{cr}}=40(2)$, $ϕ_{\text{cr}}=0.597(3)$. Based on this estimate, we study the corresponding critical exponents $β$, $γ/ν$, and $ν$. Our results are incompatible with the 2D-Ising exponents, thus raising the question whether there exists a corresponding non-equilibrium universality class.

cond-mat.soft↗

arXiv2017

Free Energy Barriers for Crystal Nucleation from Fluid Phases

Monte Carlo simulations of crystal nuclei coexisting with the fluid phase in thermal equilibrium in finite volumes are presented and analyzed, for fluid densities from dense melts to the vapor. Generalizing the lever-rule for two-phase coexistence in the canonical ensemble to finite volume, "measurements" of the nucleus volume together with the pressure and chemical potential of the surrounding fluid allows to extract the surface free energy of the nucleus. Neither the knowledge of the (in general non-spherical) nucleus shape nor of the angle-dependent interface tension is required for this task. The feasibility of the approach is demonstrated for a variant of the Asakura-Oosawa model for colloid-polymer mixtures, which form face-centered cubic colloidal crystals. For a polymer to colloid size ratio of $0.15$, the colloid packing fraction in the fluid phase can be varied from melt values to zero by the variation of an effective attractive potential between the colloids. It is found that the approximation of spherical crystal nuclei often underestimates actual nucleation barriers significantly. Nucleation barriers are found to scale as $ΔF^*=(4π/3)^{1/3}\barγ(V^*)^{2/3}+const.$ with the nucleus volume $V^*$, and the effective surface tension $\barγ$ that accounts implicitly for the nonspherical shape can be precisely estimated.

cond-mat.stat-mech↗

arXiv2016

Estimation of the critical behavior in an active colloidal system with Vicsek-like interactions

We study numerically the critical behavior of a modified, active Asakura-Oosawa model for colloid-polymer mixtures. The colloids are modeled as self-propelled particles with Vicsek-like interactions. This system undergoes phase separation between a colloid-rich and a polymer-rich phase, whereby the phase diagram depends on the strength of the Vicsek-like interactions. Employing a subsystem-block-density distribution analysis, we determine the critical point and make an attempt to estimate the critical exponents. In contrast to the passive model, we find that the critical point is not located on the rectilinear diameter. A first estimate of the critical exponents $β$ and $ν$ is consistent with the underlying 3d-Ising universality class observed for the passive model.

cond-mat.soft↗

arXiv2016

Semiflexible Polymers Under Good Solvent Conditions Interacting With Repulsive Walls

Solutions of semiflexible polymers confined by repulsive planar walls are studied by density functional theory and Molecular Dynamics simulations, to clarify the competition between the chain alignment favored by the wall and the depletion caused by the monomer-wall repulsion. A coarse-grained bead-spring model with bond bending potential is studied, varying both the contour length and the persistence length of the polymers, as well as the monomer concentration in the solution (good solvent conditions are assumed throughout, and solvent molecules are not included explicitly). The profiles of monomer density and pressure tensor components near the wall are studied, and the surface tension of the solution is obtained. While the surface tension slightly decreases with chain length for flexible polymers, it clearly increases with chain length for stiff polymers. Thus, at fixed density and fixed chain length the surface tension also increases with increasing persistence length. Chain ends always are enriched near the wall, but this effect is much larger for stiff polymers than for flexible ones. Also the profiles of the mean square gyration radius components near the wall and the nematic order parameter are studied to clarify the conditions where wall-induced nematic order occurs.

cond-mat.soft↗

arXiv2016

Anomalous fluctuations of nematic order in solutions of semiflexible polymers

The nematic ordering in semiflexible polymers with contour length $L$ exceeding their persistence length $\ell_p$ is described by a confinement of the polymers in a cylinder of radius $r_{eff}$ much larger than the radius $r_ρ$, expected from the respective concentration of the solution. Large scale Molecular Dynamics simulations combined with Density Functional Theory are used to locate the Isotropic-Nematic ($I-N$)-transition and to validate this cylindrical confinement. Anomalous fluctuations, due to chain deflections from neighboring chains in the nematic phase are proposed. Considering deflections as collective excitations in the nematically ordered phase of semiflexible polymers elucidates the origins of shortcomings in the description of the $I-N$ transition by existing theories.

cond-mat.soft↗

arXiv2015

Crystal nuclei in melts: A Monte Carlo simulation of a model for attractive colloids

As a model for a suspension of hard-sphere like colloidal particles where small nonadsorbing dissolved polymers create a depletion attraction, we introduce an effective colloid-colloid potential closely related to the Asakura-Oosawa model but that does not have any discontinuities. In simulations, this model straightforwardly allows the calculation of the pressure from the Virial formula, and the phase transition in the bulk from the liquid to crystalline solid can be accurately located from a study where a stable coexistence of a crystalline slab with a surrounding liquid phase occurs. For this model, crystalline nuclei surrounded by fluid are studied both by identifying the crystal-fluid interface on the particle level (using suitable bond orientational order parameters to distinguish the phases) and by "thermodynamic" means. I.e., the latter method amounts to compute the enhancement of chemical potential and pressure relative to their coexistence values. We show that the chemical potential can be obtained from simulating thick films, where one wall with a rather long range repulsion is present, since near this wall the Widom particle insertion method works, exploiting the fact that the chemical potential in the system is homogeneous. Finally, the surface excess free energy of the nucleus is obtained, for a wide range of nuclei volumes. From this method, it is established that classical nucleation theory works, showing that for the present model the anisotropy of the interface excess free energy of crystals and their resulting nonspherical shape has only a very small effect on the barrier.

cond-mat.soft↗

arXiv2015

Finite size effects on liquid-solid phase coexistence and the estimation of crystal nucleation barriers

A fluid in equilibrium in a finite volume $V$ with particle number $N$ at a density $ρ= N/V$ exceeding the onset density $ρ_f $ of freezing may exhibit phase coexistence between a crystalline nucleus and surrounding fluid. Using a method suitable for the estimation of the chemical potential of dense fluids we obtain the excess free energy due to the surface of the crystalline nucleus. There is neither a need to precisely locate the interface nor to compute the (anisotropic) interfacial tension. As a test case, a soft version of the Asakura-Oosawa model for colloid polymer-mixtures is treated. While our analysis is appropriate for crystal nuclei of arbitrary shape, we find the nucleation barrier to be compatible with a spherical shape, and consistent with classical nucleation theory.

cond-mat.stat-mech↗

arXiv2014

Anisotropic interfacial tension, contact angles, and line tensions: A graphics-processing-unit-based Monte Carlo study of the Ising model

As a generic example for crystals where the crystal-fluid interface tension depends on the orientation of the interface relative to the crystal lattice axes, the nearest neighbor Ising model on the simple cubic lattice is studied over a wide temperature range, both above and below the roughening transition temperature. Using a thin film geometry $L_x \times L_y \times L_z$ with periodic boundary conditions along the z-axis and two free $L_x \times L_y$ surfaces at which opposing surface fields $\pm H_{1}$ act, under conditions of partial wetting, a single planar interface inclined under a contact angle $θ< π/2$ relative to the yz-plane is stabilized. In the y-direction, a generalization of the antiperiodic boundary condition is used that maintains the translational invariance in y-direction despite the inhomogeneity of the magnetization distribution in this system. This geometry allows a simultaneous study of the angle-dependent interface tension, the contact angle, and the line tension (which depends on the contact angle, and on temperature). All these quantities are extracted from suitable thermodynamic integration procedures. In order to keep finite size effects as well as statistical errors small enough, rather large lattice sizes (of the order of 46 million sites) are found necessary, availability of very efficient code implementation of graphics processing units (GPUs) was crucial for the feasibility of this study.

physics.comp-ph↗

arXiv2014

Transitions of tethered chain molecules under tension

An applied tension force changes the equilibrium conformations of a polymer chain tethered to a planar substrate and thus affects the adsorption transition as well as the coil-globule and crystallization transitions. Conversely, solvent quality and surface attraction are reflected in equilibrium force-extension curves that can be measured in experiments. To investigate these effects theoretically, we study tethered chains under tension with Wang-Landau simulations of a bond-fluctuation lattice model. Applying our model to pulling experiments on biological molecules we obtain a good description of experimental data in the intermediate force range, where universal features dominate and finite size effects are small. For tethered chains in poor solvent, we observe the predicted two-phase coexistence at transitions from the globule to stretched conformations and also discover direct transitions from crystalline to stretched conformations. A phase portrait for finite chains constructed by evaluating the density of states for a broad range of solvent conditions and tensions shows how increasing tension leads to a disappearance of the globular phase. For chains in good solvents tethered to hard and attractive surfaces we find the predicted scaling with the chain length in the low-force regime and show that our results are well described by an analytical, independent-bond approximation for the bond-fluctuation model for the highest tensions. Finally, for a hard or slightly attractive surface the stretching of a tethered chain is a conformational change that does not correspond to a phase transition. However, when the surface attraction is sufficient to adsorb a chain it will undergo a desorption transition at a critical value of the applied force. Our results for force-induced desorption show the transition to be discontinuous with partially desorbed conformations in the coexistence region.

cond-mat.soft↗