arXiv subjects

Kwang-Ting Cheng

Publications and source records attributed to Kwang-Ting Cheng.

At least 37 records · Page 2Linked to original sources

arXiv2025

Rethinking Boundary Detection in Deep Learning-Based Medical Image Segmentation

Medical image segmentation is a pivotal task within the realms of medical image analysis and computer vision. While current methods have shown promise in accurately segmenting major regions of interest, the precise segmentation of boundary areas remains challenging. In this study, we propose a novel network architecture named CTO, which combines Convolutional Neural Networks (CNNs), Vision Transformer (ViT) models, and explicit edge detection operators to tackle this challenge. CTO surpasses existing methods in terms of segmentation accuracy and strikes a better balance between accuracy and efficiency, without the need for additional data inputs or label injections. Specifically, CTO adheres to the canonical encoder-decoder network paradigm, with a dual-stream encoder network comprising a mainstream CNN stream for capturing local features and an auxiliary StitchViT stream for integrating long-range dependencies. Furthermore, to enhance the model's ability to learn boundary areas, we introduce a boundary-guided decoder network that employs binary boundary masks generated by dedicated edge detection operators to provide explicit guidance during the decoding process. We validate the performance of CTO through extensive experiments conducted on seven challenging medical image segmentation datasets, namely ISIC 2016, PH2, ISIC 2018, CoNIC, LiTS17, and BTCV. Our experimental results unequivocally demonstrate that CTO achieves state-of-the-art accuracy on these datasets while maintaining competitive model complexity. The codes have been released at: https://github.com/xiaofang007/CTO.

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arXiv2025

Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillation

Foundation models pretrained on large-scale datasets are revolutionizing the field of computational pathology (CPath). The generalization ability of foundation models is crucial for the success in various downstream clinical tasks. However, current foundation models have only been evaluated on a limited type and number of tasks, leaving their generalization ability and overall performance unclear. To address this gap, we established a most comprehensive benchmark to evaluate the performance of off-the-shelf foundation models across six distinct clinical task types, encompassing a total of 72 specific tasks, including slide-level classification, survival prediction, ROI-tissue classification, ROI retrieval, visual question answering, and report generation. Our findings reveal that existing foundation models excel at certain task types but struggle to effectively handle the full breadth of clinical tasks. To improve the generalization of pathology foundation models, we propose a unified knowledge distillation framework consisting of both expert and self-knowledge distillation, where the former allows the model to learn from the knowledge of multiple expert models, while the latter leverages self-distillation to enable image representation learning via local-global alignment. Based on this framework, we curated a dataset of 96,000 whole slide images (WSIs) and developed a Generalizable Pathology Foundation Model (GPFM). This advanced model was trained on a substantial dataset comprising 190 million images extracted from approximately 72,000 publicly available slides, encompassing 34 major tissue types. Evaluated on the established benchmark, GPFM achieves an impressive average rank of 1.6, with 42 tasks ranked 1st, while the second-best model, UNI, attains an average rank of 3.7, with only 6 tasks ranked 1st.

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arXiv2025

APSQ: Additive Partial Sum Quantization with Algorithm-Hardware Co-Design

DNN accelerators, significantly advanced by model compression and specialized dataflow techniques, have marked considerable progress. However, the frequent access of high-precision partial sums (PSUMs) leads to excessive memory demands in architectures utilizing input/weight stationary dataflows. Traditional compression strategies have typically overlooked PSUM quantization, which may account for 69% of power consumption. This study introduces a novel Additive Partial Sum Quantization (APSQ) method, seamlessly integrating PSUM accumulation into the quantization framework. A grouping strategy that combines APSQ with PSUM quantization enhanced by a reconfigurable architecture is further proposed. The APSQ performs nearly lossless on NLP and CV tasks across BERT, Segformer, and EfficientViT models while compressing PSUMs to INT8. This leads to a notable reduction in energy costs by 28-87%. Extended experiments on LLaMA2-7B demonstrate the potential of APSQ for large language models. Code is available at https://github.com/Yonghao-Tan/APSQ.

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arXiv2025

MedIAnomaly: A comparative study of anomaly detection in medical images

Anomaly detection (AD) aims at detecting abnormal samples that deviate from the expected normal patterns. Generally, it can be trained merely on normal data, without a requirement for abnormal samples, and thereby plays an important role in rare disease recognition and health screening in the medical domain. Despite the emergence of numerous methods for medical AD, the lack of a fair and comprehensive evaluation causes ambiguous conclusions and hinders the development of this field. To address this problem, this paper builds a benchmark with unified comparison. Seven medical datasets with five image modalities, including chest X-rays, brain MRIs, retinal fundus images, dermatoscopic images, and histopathology images, are curated for extensive evaluation. Thirty typical AD methods, including reconstruction and self-supervised learning-based methods, are involved in comparison of image-level anomaly classification and pixel-level anomaly segmentation. Furthermore, for the first time, we systematically investigate the effect of key components in existing methods, revealing unresolved challenges and potential future directions. The datasets and code are available at https://github.com/caiyu6666/MedIAnomaly.

cs.CV↗

arXiv2025

Memory Efficient Transformer Adapter for Dense Predictions

While current Vision Transformer (ViT) adapter methods have shown promising accuracy, their inference speed is implicitly hindered by inefficient memory access operations, e.g., standard normalization and frequent reshaping. In this work, we propose META, a simple and fast ViT adapter that can improve the model's memory efficiency and decrease memory time consumption by reducing the inefficient memory access operations. Our method features a memory-efficient adapter block that enables the common sharing of layer normalization between the self-attention and feed-forward network layers, thereby reducing the model's reliance on normalization operations. Within the proposed block, the cross-shaped self-attention is employed to reduce the model's frequent reshaping operations. Moreover, we augment the adapter block with a lightweight convolutional branch that can enhance local inductive biases, particularly beneficial for the dense prediction tasks, e.g., object detection, instance segmentation, and semantic segmentation. The adapter block is finally formulated in a cascaded manner to compute diverse head features, thereby enriching the variety of feature representations. Empirically, extensive evaluations on multiple representative datasets validate that META substantially enhances the predicted quality, while achieving a new state-of-the-art accuracy-efficiency trade-off. Theoretically, we demonstrate that META exhibits superior generalization capability and stronger adaptability.

cs.CV↗

arXiv2025

Generalized Task-Driven Medical Image Quality Enhancement with Gradient Promotion

Thanks to the recent achievements in task-driven image quality enhancement (IQE) models like ESTR, the image enhancement model and the visual recognition model can mutually enhance each other's quantitation while producing high-quality processed images that are perceivable by our human vision systems. However, existing task-driven IQE models tend to overlook an underlying fact -- different levels of vision tasks have varying and sometimes conflicting requirements of image features. To address this problem, this paper proposes a generalized gradient promotion (GradProm) training strategy for task-driven IQE of medical images. Specifically, we partition a task-driven IQE system into two sub-models, i.e., a mainstream model for image enhancement and an auxiliary model for visual recognition. During training, GradProm updates only parameters of the image enhancement model using gradients of the visual recognition model and the image enhancement model, but only when gradients of these two sub-models are aligned in the same direction, which is measured by their cosine similarity. In case gradients of these two sub-models are not in the same direction, GradProm only uses the gradient of the image enhancement model to update its parameters. Theoretically, we have proved that the optimization direction of the image enhancement model will not be biased by the auxiliary visual recognition model under the implementation of GradProm. Empirically, extensive experimental results on four public yet challenging medical image datasets demonstrated the superior performance of GradProm over existing state-of-the-art methods.

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arXiv2024

SnapGen: Taming High-Resolution Text-to-Image Models for Mobile Devices with Efficient Architectures and Training

Existing text-to-image (T2I) diffusion models face several limitations, including large model sizes, slow runtime, and low-quality generation on mobile devices. This paper aims to address all of these challenges by developing an extremely small and fast T2I model that generates high-resolution and high-quality images on mobile platforms. We propose several techniques to achieve this goal. First, we systematically examine the design choices of the network architecture to reduce model parameters and latency, while ensuring high-quality generation. Second, to further improve generation quality, we employ cross-architecture knowledge distillation from a much larger model, using a multi-level approach to guide the training of our model from scratch. Third, we enable a few-step generation by integrating adversarial guidance with knowledge distillation. For the first time, our model SnapGen, demonstrates the generation of 1024x1024 px images on a mobile device around 1.4 seconds. On ImageNet-1K, our model, with only 372M parameters, achieves an FID of 2.06 for 256x256 px generation. On T2I benchmarks (i.e., GenEval and DPG-Bench), our model with merely 379M parameters, surpasses large-scale models with billions of parameters at a significantly smaller size (e.g., 7x smaller than SDXL, 14x smaller than IF-XL).

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arXiv2024

Quantization Variation: A New Perspective on Training Transformers with Low-Bit Precision

Despite the outstanding performance of transformers in both language and vision tasks, the expanding computation and model size have increased the demand for efficient deployment. To address the heavy computation and parameter drawbacks, quantization is frequently studied in the community as a representative model compression technique and has seen extensive use on ConvNets. However, due to the unique properties of transformers, the low-bit quantization applications are still limited and underexplored. In this paper, we identify the difficulty of transformer low-bit quantization-aware training on its unique variation behaviors, which significantly differ from ConvNets. Based on comprehensive quantitative analysis, we observe variation in three hierarchies: various module quantization sensitivities, outliers in static weight and activation distribution, and oscillation in dynamic parameter fluctuations. These variations of transformers bring instability to the quantization-aware training (QAT) and negatively influence the performance. We explore the best practices to alleviate the variation's influence during low-bit transformer QAT and propose a variation-aware quantization scheme for both vision and language transformers. We extensively verify and show our scheme can alleviate the variation and improve the performance of transformers across various models and tasks. Our solution substantially improves the 2-bit Swin-T and binary BERT-base, achieving a 3.35% and 1.4% accuracy improvement over previous state-of-the-art methods on ImageNet-1K and GLUE. Codes and models are available at https://github.com/HuangOwen/Quantization-Variation.

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arXiv2024

RoLoRA: Fine-tuning Rotated Outlier-free LLMs for Effective Weight-Activation Quantization

Low-Rank Adaptation (LoRA), as a representative Parameter-Efficient Fine-Tuning (PEFT)method, significantly enhances the training efficiency by updating only a small portion of the weights in Large Language Models (LLMs). Recently, weight-only quantization techniques have also been applied to LoRA methods to reduce the memory footprint of fine-tuning. However, applying weight-activation quantization to the LoRA pipeline is under-explored, and we observe substantial performance degradation primarily due to the presence of activation outliers. In this work, we propose RoLoRA, the first LoRA-based scheme for effective weight-activation quantization. RoLoRA utilizes rotation for outlier elimination and proposes rotation-aware fine-tuning to preserve the outlier-free characteristics in rotated LLMs. Experimental results show RoLoRA consistently improves low-bit LoRA convergence and post-training quantization robustness in weight-activation settings. We evaluate RoLoRA across LLaMA2-7B/13B, LLaMA3-8B models, achieving up to 29.5% absolute accuracy gain of 4-bit weight-activation quantized LLaMA2- 13B on commonsense reasoning tasks compared to LoRA baseline. We further demonstrate its effectiveness on Large Multimodal Models (LLaVA-1.5-7B). Codes are available at https://github.com/HuangOwen/RoLoRA

cs.CL↗

arXiv2024

Revisiting Deep Ensemble Uncertainty for Enhanced Medical Anomaly Detection

Medical anomaly detection (AD) is crucial in pathological identification and localization. Current methods typically rely on uncertainty estimation in deep ensembles to detect anomalies, assuming that ensemble learners should agree on normal samples while exhibiting disagreement on unseen anomalies in the output space. However, these methods may suffer from inadequate disagreement on anomalies or diminished agreement on normal samples. To tackle these issues, we propose D2UE, a Diversified Dual-space Uncertainty Estimation framework for medical anomaly detection. To effectively balance agreement and disagreement for anomaly detection, we propose Redundancy-Aware Repulsion (RAR), which uses a similarity kernel that remains invariant to both isotropic scaling and orthogonal transformations, explicitly promoting diversity in learners' feature space. Moreover, to accentuate anomalous regions, we develop Dual-Space Uncertainty (DSU), which utilizes the ensemble's uncertainty in input and output spaces. In input space, we first calculate gradients of reconstruction error with respect to input images. The gradients are then integrated with reconstruction outputs to estimate uncertainty for inputs, enabling effective anomaly discrimination even when output space disagreement is minimal. We conduct a comprehensive evaluation of five medical benchmarks with different backbones. Experimental results demonstrate the superiority of our method to state-of-the-art methods and the effectiveness of each component in our framework. Our code is available at https://github.com/Rubiscol/D2UE.

cs.CV↗

arXiv2024

Labeled-to-Unlabeled Distribution Alignment for Partially-Supervised Multi-Organ Medical Image Segmentation

Partially-supervised multi-organ medical image segmentation aims to develop a unified semantic segmentation model by utilizing multiple partially-labeled datasets, with each dataset providing labels for a single class of organs. However, the limited availability of labeled foreground organs and the absence of supervision to distinguish unlabeled foreground organs from the background pose a significant challenge, which leads to a distribution mismatch between labeled and unlabeled pixels. Although existing pseudo-labeling methods can be employed to learn from both labeled and unlabeled pixels, they are prone to performance degradation in this task, as they rely on the assumption that labeled and unlabeled pixels have the same distribution. In this paper, to address the problem of distribution mismatch, we propose a labeled-to-unlabeled distribution alignment (LTUDA) framework that aligns feature distributions and enhances discriminative capability. Specifically, we introduce a cross-set data augmentation strategy, which performs region-level mixing between labeled and unlabeled organs to reduce distribution discrepancy and enrich the training set. Besides, we propose a prototype-based distribution alignment method that implicitly reduces intra-class variation and increases the separation between the unlabeled foreground and background. This can be achieved by encouraging consistency between the outputs of two prototype classifiers and a linear classifier. Extensive experimental results on the AbdomenCT-1K dataset and a union of four benchmark datasets (including LiTS, MSD-Spleen, KiTS, and NIH82) demonstrate that our method outperforms the state-of-the-art partially-supervised methods by a considerable margin, and even surpasses the fully-supervised methods. The source code is publicly available at https://github.com/xjiangmed/LTUDA.

cs.CV↗

arXiv2024

Aligning Medical Images with General Knowledge from Large Language Models

Pre-trained large vision-language models (VLMs) like CLIP have revolutionized visual representation learning using natural language as supervisions, and demonstrated promising generalization ability. In this work, we propose ViP, a novel visual symptom-guided prompt learning framework for medical image analysis, which facilitates general knowledge transfer from CLIP. ViP consists of two key components: a visual symptom generator (VSG) and a dual-prompt network. Specifically, VSG aims to extract explicable visual symptoms from pre-trained large language models, while the dual-prompt network utilizes these visual symptoms to guide the training on two learnable prompt modules, i.e., context prompt and merge prompt, which effectively adapts our framework to medical image analysis via large VLMs. Extensive experimental results demonstrate that ViP can outperform state-of-the-art methods on two challenging datasets.

cs.CV↗

arXiv2024

Vessel-Promoted OCT to OCTA Image Translation by Heuristic Contextual Constraints

Optical Coherence Tomography Angiography (OCTA) is a crucial tool in the clinical screening of retinal diseases, allowing for accurate 3D imaging of blood vessels through non-invasive scanning. However, the hardware-based approach for acquiring OCTA images presents challenges due to the need for specialized sensors and expensive devices. In this paper, we introduce a novel method called TransPro, which can translate the readily available 3D Optical Coherence Tomography (OCT) images into 3D OCTA images without requiring any additional hardware modifications. Our TransPro method is primarily driven by two novel ideas that have been overlooked by prior work. The first idea is derived from a critical observation that the OCTA projection map is generated by averaging pixel values from its corresponding B-scans along the Z-axis. Hence, we introduce a hybrid architecture incorporating a 3D adversarial generative network and a novel Heuristic Contextual Guidance (HCG) module, which effectively maintains the consistency of the generated OCTA images between 3D volumes and projection maps. The second idea is to improve the vessel quality in the translated OCTA projection maps. As a result, we propose a novel Vessel Promoted Guidance (VPG) module to enhance the attention of network on retinal vessels. Experimental results on two datasets demonstrate that our TransPro outperforms state-of-the-art approaches, with relative improvements around 11.4% in MAE, 2.7% in PSNR, 2% in SSIM, 40% in VDE, and 9.1% in VDC compared to the baseline method. The code is available at: https://github.com/ustlsh/TransPro.

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arXiv2024

Efficient and Robust Quantization-aware Training via Adaptive Coreset Selection

Quantization-aware training (QAT) is a representative model compression method to reduce redundancy in weights and activations. However, most existing QAT methods require end-to-end training on the entire dataset, which suffers from long training time and high energy costs. In addition, the potential label noise in the training data undermines the robustness of QAT. We propose two metrics based on analysis of loss and gradient of quantized weights: error vector score and disagreement score, to quantify the importance of each sample during training. Guided by these two metrics, we proposed a quantization-aware Adaptive Coreset Selection (ACS) method to select the data for the current training epoch. We evaluate our method on various networks (ResNet-18, MobileNetV2, RetinaNet), datasets(CIFAR-10, CIFAR-100, ImageNet-1K, COCO), and under different quantization settings. Specifically, our method can achieve an accuracy of 68.39\% of 4-bit quantized ResNet-18 on the ImageNet-1K dataset with only a 10\% subset, which has an absolute gain of 4.24\% compared to the baseline. Our method can also improve the robustness of QAT by removing noisy samples in the training set.

cs.LG↗

arXiv2024

Non-parametric regularization for class imbalance federated medical image classification

Limited training data and severe class imbalance pose significant challenges to developing clinically robust deep learning models. Federated learning (FL) addresses the former by enabling different medical clients to collaboratively train a deep model without sharing privacy-sensitive data. However, class imbalance worsens due to variation in inter-client class distribution. We propose federated learning with non-parametric regularization (FedNPR and FedNPR-Per, a personalized version of FedNPR) to regularize the feature extractor and enhance useful and discriminative signal in the feature space. Our extensive experiments show that FedNPR outperform the existing state-of-the art FL approaches in class imbalance skin lesion classification and intracranial hemorrhage identification. Additionally, the non-parametric regularization module consistently improves the performance of existing state-of-the-art FL approaches. We believe that NPR is a valuable tool in FL under clinical settings.

cs.CV↗

arXiv2024

Dynamic neural network with memristive CIM and CAM for 2D and 3D vision

The brain is dynamic, associative and efficient. It reconfigures by associating the inputs with past experiences, with fused memory and processing. In contrast, AI models are static, unable to associate inputs with past experiences, and run on digital computers with physically separated memory and processing. We propose a hardware-software co-design, a semantic memory-based dynamic neural network (DNN) using memristor. The network associates incoming data with the past experience stored as semantic vectors. The network and the semantic memory are physically implemented on noise-robust ternary memristor-based Computing-In-Memory (CIM) and Content-Addressable Memory (CAM) circuits, respectively. We validate our co-designs, using a 40nm memristor macro, on ResNet and PointNet++ for classifying images and 3D points from the MNIST and ModelNet datasets, which not only achieves accuracy on par with software but also a 48.1% and 15.9% reduction in computational budget. Moreover, it delivers a 77.6% and 93.3% reduction in energy consumption.

cs.AR↗

arXiv2024

DoRA: Weight-Decomposed Low-Rank Adaptation

Among the widely used parameter-efficient fine-tuning (PEFT) methods, LoRA and its variants have gained considerable popularity because of avoiding additional inference costs. However, there still often exists an accuracy gap between these methods and full fine-tuning (FT). In this work, we first introduce a novel weight decomposition analysis to investigate the inherent differences between FT and LoRA. Aiming to resemble the learning capacity of FT from the findings, we propose Weight-Decomposed Low-Rank Adaptation (DoRA). DoRA decomposes the pre-trained weight into two components, magnitude and direction, for fine-tuning, specifically employing LoRA for directional updates to efficiently minimize the number of trainable parameters. By employing \ours, we enhance both the learning capacity and training stability of LoRA while avoiding any additional inference overhead. \ours~consistently outperforms LoRA on fine-tuning LLaMA, LLaVA, and VL-BART on various downstream tasks, such as commonsense reasoning, visual instruction tuning, and image/video-text understanding. Code is available at https://github.com/NVlabs/DoRA.

cs.CL↗

arXiv2024

Rethinking Autoencoders for Medical Anomaly Detection from A Theoretical Perspective

Medical anomaly detection aims to identify abnormal findings using only normal training data, playing a crucial role in health screening and recognizing rare diseases. Reconstruction-based methods, particularly those utilizing autoencoders (AEs), are dominant in this field. They work under the assumption that AEs trained on only normal data cannot reconstruct unseen abnormal regions well, thereby enabling the anomaly detection based on reconstruction errors. However, this assumption does not always hold due to the mismatch between the reconstruction training objective and the anomaly detection task objective, rendering these methods theoretically unsound. This study focuses on providing a theoretical foundation for AE-based reconstruction methods in anomaly detection. By leveraging information theory, we elucidate the principles of these methods and reveal that the key to improving AE in anomaly detection lies in minimizing the information entropy of latent vectors. Experiments on four datasets with two image modalities validate the effectiveness of our theory. To the best of our knowledge, this is the first effort to theoretically clarify the principles and design philosophy of AE for anomaly detection. The code is available at \url{https://github.com/caiyu6666/AE4AD}.

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