Searcharxiv⌕ Search

arXiv subjects

Kwang-Ting Cheng

Publications and source records attributed to Kwang-Ting Cheng.

At least 73 records · Page 4Linked to original sources
arXiv2023

Few Shot Medical Image Segmentation with Cross Attention Transformer

Medical image segmentation has made significant progress in recent years. Deep learning-based methods are recognized as data-hungry techniques, requiring large amounts of data with manual annotations. However, manual annotation is expensive in the field of medical image analysis, which requires domain-specific expertise. To address this challenge, few-shot learning has the potential to learn new classes from only a few examples. In this work, we propose a novel framework for few-shot medical image segmentation, termed CAT-Net, based on cross masked attention Transformer. Our proposed network mines the correlations between the support image and query image, limiting them to focus only on useful foreground information and boosting the representation capacity of both the support prototype and query features. We further design an iterative refinement framework that refines the query image segmentation iteratively and promotes the support feature in turn. We validated the proposed method on three public datasets: Abd-CT, Abd-MRI, and Card-MRI. Experimental results demonstrate the superior performance of our method compared to state-of-the-art methods and the effectiveness of each component. Code: https://github.com/hust-linyi/CAT-Net.

cs.CV↗
arXiv2023

MMBench: Benchmarking End-to-End Multi-modal DNNs and Understanding Their Hardware-Software Implications

The explosive growth of various types of big data and advances in AI technologies have catalyzed a new type of workloads called multi-modal DNNs. Multi-modal DNNs are capable of interpreting and reasoning about information from multiple modalities, making them more applicable to real-world AI scenarios. In recent research, multi-modal DNNs have outperformed the best uni-modal DNN in a wide range of distributed computing applications from traditional multimedia systems to emerging autonomous edge systems. However, despite their importance and superiority, very limited research attention has been devoted to understand the characteristics of multi-modal DNNs and their implications on current computing software/hardware platforms. Existing benchmarks either target uni-modal DNNs or only focus on the algorithm characteristics of multi-modal DNNs. There lacks representative benchmark suites that provide comprehensive system and architecture level analysis of multi-modal networks. To advance the understanding of these multi-modal DNN workloads and facilitate related research, we present MMBench, an open-source, end-to-end benchmark suite consisting of a set of real-world multi-modal DNN workloads with relevant performance metrics for evaluation. We then use MMBench to conduct an in-depth analysis on the characteristics of multi-modal DNNs. We demonstrate their unique characteristics of clear multi-stage execution, frequent synchronization and high heterogeneity, which distinguish them from conventional uni-modal DNNs. Finally, we conduct a case study and extend our benchmark to edge devices. We hope that our work can provide insights for future software/hardware design and optimization to underpin multi-modal DNNs on both cloud and edge computing platforms.

cs.PF↗
arXiv2023

Bi-Modality Medical Image Synthesis Using Semi-Supervised Sequential Generative Adversarial Networks

In this paper, we propose a bi-modality medical image synthesis approach based on sequential generative adversarial network (GAN) and semi-supervised learning. Our approach consists of two generative modules that synthesize images of the two modalities in a sequential order. A method for measuring the synthesis complexity is proposed to automatically determine the synthesis order in our sequential GAN. Images of the modality with a lower complexity are synthesized first, and the counterparts with a higher complexity are generated later. Our sequential GAN is trained end-to-end in a semi-supervised manner. In supervised training, the joint distribution of bi-modality images are learned from real paired images of the two modalities by explicitly minimizing the reconstruction losses between the real and synthetic images. To avoid overfitting limited training images, in unsupervised training, the marginal distribution of each modality is learned based on unpaired images by minimizing the Wasserstein distance between the distributions of real and fake images. We comprehensively evaluate the proposed model using two synthesis tasks based on three types of evaluate metrics and user studies. Visual and quantitative results demonstrate the superiority of our method to the state-of-the-art methods, and reasonable visual quality and clinical significance. Code is made publicly available at https://github.com/hustlinyi/Multimodal-Medical-Image-Synthesis.

eess.IV↗
arXiv2023

Randomized Quantization: A Generic Augmentation for Data Agnostic Self-supervised Learning

Self-supervised representation learning follows a paradigm of withholding some part of the data and tasking the network to predict it from the remaining part. Among many techniques, data augmentation lies at the core for creating the information gap. Towards this end, masking has emerged as a generic and powerful tool where content is withheld along the sequential dimension, e.g., spatial in images, temporal in audio, and syntactic in language. In this paper, we explore the orthogonal channel dimension for generic data augmentation by exploiting precision redundancy. The data for each channel is quantized through a non-uniform quantizer, with the quantized value sampled randomly within randomly sampled quantization bins. From another perspective, quantization is analogous to channel-wise masking, as it removes the information within each bin, but preserves the information across bins. Our approach significantly surpasses existing generic data augmentation methods, while showing on par performance against modality-specific augmentations. We comprehensively evaluate our approach on vision, audio, 3D point clouds, as well as the DABS benchmark which is comprised of various data modalities. The code is available at https: //github.com/microsoft/random_quantize.

cs.CV↗
arXiv2023

Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and Co-Training

Nuclei segmentation is a crucial task for whole slide image analysis in digital pathology. Generally, the segmentation performance of fully-supervised learning heavily depends on the amount and quality of the annotated data. However, it is time-consuming and expensive for professional pathologists to provide accurate pixel-level ground truth, while it is much easier to get coarse labels such as point annotations. In this paper, we propose a weakly-supervised learning method for nuclei segmentation that only requires point annotations for training. First, coarse pixel-level labels are derived from the point annotations based on the Voronoi diagram and the k-means clustering method to avoid overfitting. Second, a co-training strategy with an exponential moving average method is designed to refine the incomplete supervision of the coarse labels. Third, a self-supervised visual representation learning method is tailored for nuclei segmentation of pathology images that transforms the hematoxylin component images into the H&E stained images to gain better understanding of the relationship between the nuclei and cytoplasm. We comprehensively evaluate the proposed method using two public datasets. Both visual and quantitative results demonstrate the superiority of our method to the state-of-the-art methods, and its competitive performance compared to the fully-supervised methods. Code: https://github.com/hust-linyi/SC-Net

eess.IV↗
arXiv2023

Radiomics-Informed Deep Learning for Classification of Atrial Fibrillation Sub-Types from Left-Atrium CT Volumes

Atrial Fibrillation (AF) is characterized by rapid, irregular heartbeats, and can lead to fatal complications such as heart failure. The disease is divided into two sub-types based on severity, which can be automatically classified through CT volumes for disease screening of severe cases. However, existing classification approaches rely on generic radiomic features that may not be optimal for the task, whilst deep learning methods tend to over-fit to the high-dimensional volume inputs. In this work, we propose a novel radiomics-informed deep-learning method, RIDL, that combines the advantages of deep learning and radiomic approaches to improve AF sub-type classification. Unlike existing hybrid techniques that mostly rely on naïve feature concatenation, we observe that radiomic feature selection methods can serve as an information prior, and propose supplementing low-level deep neural network (DNN) features with locally computed radiomic features. This reduces DNN over-fitting and allows local variations between radiomic features to be better captured. Furthermore, we ensure complementary information is learned by deep and radiomic features by designing a novel feature de-correlation loss. Combined, our method addresses the limitations of deep learning and radiomic approaches and outperforms state-of-the-art radiomic, deep learning, and hybrid approaches, achieving 86.9% AUC for the AF sub-type classification task. Code is available at https://github.com/xmed-lab/RIDL.

cs.CV↗
arXiv2023

FedNoRo: Towards Noise-Robust Federated Learning by Addressing Class Imbalance and Label Noise Heterogeneity

Federated noisy label learning (FNLL) is emerging as a promising tool for privacy-preserving multi-source decentralized learning. Existing research, relying on the assumption of class-balanced global data, might be incapable to model complicated label noise, especially in medical scenarios. In this paper, we first formulate a new and more realistic federated label noise problem where global data is class-imbalanced and label noise is heterogeneous, and then propose a two-stage framework named FedNoRo for noise-robust federated learning. Specifically, in the first stage of FedNoRo, per-class loss indicators followed by Gaussian Mixture Model are deployed for noisy client identification. In the second stage, knowledge distillation and a distance-aware aggregation function are jointly adopted for noise-robust federated model updating. Experimental results on the widely-used ICH and ISIC2019 datasets demonstrate the superiority of FedNoRo against the state-of-the-art FNLL methods for addressing class imbalance and label noise heterogeneity in real-world FL scenarios.

cs.LG↗
arXiv2023

Compete to Win: Enhancing Pseudo Labels for Barely-supervised Medical Image Segmentation

This study investigates barely-supervised medical image segmentation where only few labeled data, i.e., single-digit cases are available. We observe the key limitation of the existing state-of-the-art semi-supervised solution cross pseudo supervision is the unsatisfactory precision of foreground classes, leading to a degenerated result under barely-supervised learning. In this paper, we propose a novel Compete-to-Win method (ComWin) to enhance the pseudo label quality. In contrast to directly using one model's predictions as pseudo labels, our key idea is that high-quality pseudo labels should be generated by comparing multiple confidence maps produced by different networks to select the most confident one (a compete-to-win strategy). To further refine pseudo labels at near-boundary areas, an enhanced version of ComWin, namely, ComWin+, is proposed by integrating a boundary-aware enhancement module. Experiments show that our method can achieve the best performance on three public medical image datasets for cardiac structure segmentation, pancreas segmentation and colon tumor segmentation, respectively. The source code is now available at https://github.com/Huiimin5/comwin.

cs.CV↗
arXiv2023

Exploring Feature Representation Learning for Semi-supervised Medical Image Segmentation

This paper presents a simple yet effective two-stage framework for semi-supervised medical image segmentation. Unlike prior state-of-the-art semi-supervised segmentation methods that predominantly rely on pseudo supervision directly on predictions, such as consistency regularization and pseudo labeling, our key insight is to explore the feature representation learning with labeled and unlabeled (i.e., pseudo labeled) images to regularize a more compact and better-separated feature space, which paves the way for low-density decision boundary learning and therefore enhances the segmentation performance. A stage-adaptive contrastive learning method is proposed, containing a boundary-aware contrastive loss that takes advantage of the labeled images in the first stage, as well as a prototype-aware contrastive loss to optimize both labeled and pseudo labeled images in the second stage. To obtain more accurate prototype estimation, which plays a critical role in prototype-aware contrastive learning, we present an aleatoric uncertainty-aware method, namely AUA, to generate higher-quality pseudo labels. AUA adaptively regularizes prediction consistency by taking advantage of image ambiguity, which, given its significance, is under-explored by existing works. Our method achieves the best results on three public medical image segmentation benchmarks.

cs.CV↗
arXiv2023

FoodWise: Food Waste Reduction and Behavior Change on Campus with Data Visualization and Gamification

Food waste presents a substantial challenge with significant environmental and economic ramifications, and its severity on campus environments is of particular concern. In response to this, we introduce FoodWise, a dual-component system tailored to inspire and incentivize campus communities to reduce food waste. The system consists of a data storytelling dashboard that graphically displays food waste information from university canteens, coupled with a mobile web application that encourages users to log their food waste reduction actions and rewards active participants for their efforts. Deployed during a two-week food-saving campaign at The Hong Kong University of Science and Technology (HKUST) in March 2023, FoodWise engaged over 200 participants from the university community, resulting in the logging of over 800 daily food-saving actions. Feedback collected post-campaign underscores the system's efficacy in elevating user consciousness about food waste and prompting behavioral shifts towards a more sustainable campus. This paper also provides insights for enhancing our system, contributing to a broader discourse on sustainable campus initiatives.

cs.HC↗
arXiv2023

FedIIC: Towards Robust Federated Learning for Class-Imbalanced Medical Image Classification

Federated learning (FL), training deep models from decentralized data without privacy leakage, has shown great potential in medical image computing recently. However, considering the ubiquitous class imbalance in medical data, FL can exhibit performance degradation, especially for minority classes (e.g. rare diseases). Existing methods towards this problem mainly focus on training a balanced classifier to eliminate class prior bias among classes, but neglect to explore better representation to facilitate classification performance. In this paper, we present a privacy-preserving FL method named FedIIC to combat class imbalance from two perspectives: feature learning and classifier learning. In feature learning, two levels of contrastive learning are designed to extract better class-specific features with imbalanced data in FL. In classifier learning, per-class margins are dynamically set according to real-time difficulty and class priors, which helps the model learn classes equally. Experimental results on publicly-available datasets demonstrate the superior performance of FedIIC in dealing with both real-world and simulated multi-source medical imaging data under class imbalance. Code is available at https://github.com/wnn2000/FedIIC.

cs.CV↗
arXiv2023

A 137.5 TOPS/W SRAM Compute-in-Memory Macro with 9-b Memory Cell-Embedded ADCs and Signal Margin Enhancement Techniques for AI Edge Applications

In this paper, we propose a high-precision SRAM-based CIM macro that can perform 4x4-bit MAC operations and yield 9-bit signed output. The inherent discharge branches of SRAM cells are utilized to apply time-modulated MAC and 9-bit ADC readout operations on two bit-line capacitors. The same principle is used for both MAC and A-to-D conversion ensuring high linearity and thus supporting large number of analog MAC accumulations. The memory cell-embedded ADC eliminates the use of separate ADCs and enhances energy and area efficiency. Additionally, two signal margin enhancement techniques, namely the MAC-folding and boosted-clipping schemes, are proposed to further improve the CIM computation accuracy.

cs.AR↗
arXiv2023

Oscillation-free Quantization for Low-bit Vision Transformers

Weight oscillation is an undesirable side effect of quantization-aware training, in which quantized weights frequently jump between two quantized levels, resulting in training instability and a sub-optimal final model. We discover that the learnable scaling factor, a widely-used $\textit{de facto}$ setting in quantization aggravates weight oscillation. In this study, we investigate the connection between the learnable scaling factor and quantized weight oscillation and use ViT as a case driver to illustrate the findings and remedies. In addition, we also found that the interdependence between quantized weights in $\textit{query}$ and $\textit{key}$ of a self-attention layer makes ViT vulnerable to oscillation. We, therefore, propose three techniques accordingly: statistical weight quantization ($\rm StatsQ$) to improve quantization robustness compared to the prevalent learnable-scale-based method; confidence-guided annealing ($\rm CGA$) that freezes the weights with $\textit{high confidence}$ and calms the oscillating weights; and $\textit{query}$-$\textit{key}$ reparameterization ($\rm QKR$) to resolve the query-key intertwined oscillation and mitigate the resulting gradient misestimation. Extensive experiments demonstrate that these proposed techniques successfully abate weight oscillation and consistently achieve substantial accuracy improvement on ImageNet. Specifically, our 2-bit DeiT-T/DeiT-S algorithms outperform the previous state-of-the-art by 9.8% and 7.7%, respectively. Code and models are available at: https://github.com/nbasyl/OFQ.

cs.CV↗
arXiv2023

Rethinking Boundary Detection in Deep Learning Models for Medical Image Segmentation

Medical image segmentation is a fundamental task in the community of medical image analysis. In this paper, a novel network architecture, referred to as Convolution, Transformer, and Operator (CTO), is proposed. CTO employs a combination of Convolutional Neural Networks (CNNs), Vision Transformer (ViT), and an explicit boundary detection operator to achieve high recognition accuracy while maintaining an optimal balance between accuracy and efficiency. The proposed CTO follows the standard encoder-decoder segmentation paradigm, where the encoder network incorporates a popular CNN backbone for capturing local semantic information, and a lightweight ViT assistant for integrating long-range dependencies. To enhance the learning capacity on boundary, a boundary-guided decoder network is proposed that uses a boundary mask obtained from a dedicated boundary detection operator as explicit supervision to guide the decoding learning process. The performance of the proposed method is evaluated on six challenging medical image segmentation datasets, demonstrating that CTO achieves state-of-the-art accuracy with a competitive model complexity.

cs.CV↗
arXiv2023

FCA: Taming Long-tailed Federated Medical Image Classification by Classifier Anchoring

Limited training data and severe class imbalance impose significant challenges to developing clinically robust deep learning models. Federated learning (FL) addresses the former by enabling different medical clients to collaboratively train a deep model without sharing data. However, the class imbalance problem persists due to inter-client class distribution variations. To overcome this, we propose federated classifier anchoring (FCA) by adding a personalized classifier at each client to guide and debias the federated model through consistency learning. Additionally, FCA debiases the federated classifier and each client's personalized classifier based on their respective class distributions, thus mitigating divergence. With FCA, the federated feature extractor effectively learns discriminative features suitably globally for federation as well as locally for all participants. In clinical practice, the federated model is expected to be both generalized, performing well across clients, and specialized, benefiting each individual client from collaboration. According to this, we propose a novel evaluation metric to assess models' generalization and specialization performance globally on an aggregated public test set and locally at each client. Through comprehensive comparison and evaluation, FCA outperforms the state-of-the-art methods with large margins for federated long-tailed skin lesion classification and intracranial hemorrhage classification, making it a more feasible solution in clinical settings.

cs.CV↗
arXiv2023

BATFormer: Towards Boundary-Aware Lightweight Transformer for Efficient Medical Image Segmentation

Objective: Transformers, born to remedy the inadequate receptive fields of CNNs, have drawn explosive attention recently. However, the daunting computational complexity of global representation learning, together with rigid window partitioning, hinders their deployment in medical image segmentation. This work aims to address the above two issues in transformers for better medical image segmentation. Methods: We propose a boundary-aware lightweight transformer (BATFormer) that can build cross-scale global interaction with lower computational complexity and generate windows flexibly under the guidance of entropy. Specifically, to fully explore the benefits of transformers in long-range dependency establishment, a cross-scale global transformer (CGT) module is introduced to jointly utilize multiple small-scale feature maps for richer global features with lower computational complexity. Given the importance of shape modeling in medical image segmentation, a boundary-aware local transformer (BLT) module is constructed. Different from rigid window partitioning in vanilla transformers which would produce boundary distortion, BLT adopts an adaptive window partitioning scheme under the guidance of entropy for both computational complexity reduction and shape preservation. Results: BATFormer achieves the best performance in Dice of 92.84%, 91.97%, 90.26%, and 96.30% for the average, right ventricle, myocardium, and left ventricle respectively on the ACDC dataset and the best performance in Dice, IoU, and ACC of 90.76%, 84.64%, and 96.76% respectively on the ISIC 2018 dataset. More importantly, BATFormer requires the least amount of model parameters and the lowest computational complexity compared to the state-of-the-art approaches. Conclusion and Significance: Our results demonstrate the necessity of developing customized transformers for efficient and better medical image segmentation.

cs.CV↗
arXiv2023

Exploring Visual Prompts for Whole Slide Image Classification with Multiple Instance Learning

Multiple instance learning (MIL) has emerged as a popular method for classifying histopathology whole slide images (WSIs). However, existing approaches typically rely on pre-trained models from large natural image datasets, such as ImageNet, to generate instance features, which can be sub-optimal due to the significant differences between natural images and histopathology images that lead to a domain shift. In this paper, we present a novel, simple yet effective method for learning domain-specific knowledge transformation from pre-trained models to histopathology images. Our approach entails using a prompt component to assist the pre-trained model in discerning differences between the pre-trained dataset and the target histopathology dataset, resulting in improved performance of MIL models. We validate our method on two publicly available datasets, Camelyon16 and TCGA-NSCLC. Extensive experimental results demonstrate the significant performance improvement of our method for different MIL models and backbones. Upon publication of this paper, we will release the source code for our method.

cs.CV↗
arXiv2023

Dual-distribution discrepancy with self-supervised refinement for anomaly detection in medical images

Medical anomaly detection is a crucial yet challenging task aimed at recognizing abnormal images to assist in diagnosis. Due to the high-cost annotations of abnormal images, most methods utilize only known normal images during training and identify samples deviating from the normal profile as anomalies in the testing phase. Many readily available unlabeled images containing anomalies are thus ignored in the training phase, restricting the performance. To solve this problem, we introduce one-class semi-supervised learning (OC-SSL) to utilize known normal and unlabeled images for training, and propose Dual-distribution Discrepancy for Anomaly Detection (DDAD) based on this setting. Ensembles of reconstruction networks are designed to model the distribution of normal images and the distribution of both normal and unlabeled images, deriving the normative distribution module (NDM) and unknown distribution module (UDM). Subsequently, the intra-discrepancy of NDM and inter-discrepancy between the two modules are designed as anomaly scores. Furthermore, we propose a new perspective on self-supervised learning, which is designed to refine the anomaly scores rather than detect anomalies directly. Five medical datasets, including chest X-rays, brain MRIs and retinal fundus images, are organized as benchmarks for evaluation. Experiments on these benchmarks comprehensively compare a wide range of anomaly detection methods and demonstrate that our method achieves significant gains and outperforms the state-of-the-art. Code and organized benchmarks are available at https://github.com/caiyu6666/DDAD-ASR.

cs.CV↗