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Kylie Yeung

Publications and source records attributed to Kylie Yeung.

2 recordsLinked to original sources

Algebraic Methods and Computational Strategies for Pseudoinverse-Based MR Image Reconstruction (Pinv-Recon)

Image reconstruction in Magnetic Resonance Imaging (MRI) is fundamentally a linear inverse problem, such that the image can be recovered via explicit pseudoinversion of the encoding matrix by solving $\textbf{data} = \textbf{Encode} \times \textbf{image}$ - a method referred to here as Pinv-Recon. While the benefits of this approach were acknowledged in early studies, the field has historically favored fast Fourier transforms (FFT) and iterative techniques due to perceived computational limitations of the pseudoinversion approach. This work revisits Pinv-Recon in the context of modern hardware, software, and optimized linear algebra routines. We compare various matrix inversion strategies, assess regularization effects, and demonstrate incorporation of advanced encoding physics into a unified reconstruction framework. While hardware advances have already significantly reduced computation time compared to earlier studies, our work further demonstrates that leveraging Cholesky decomposition leads to a two-order-of-magnitude improvement in computational efficiency over previous Singular Value Decomposition-based implementations. Moreover, we demonstrate the versatility of Pinv-Recon on diverse $\textit{in vivo}$ datasets encompassing a range of encoding schemes, starting with low- to medium-resolution functional and metabolic imaging and extending to high-resolution cases. Our findings establish Pinv-Recon as a versatile and robust reconstruction framework that aligns with the increasing emphasis on open-source and reproducible MRI research.

physics.med-ph↗

Distribution-informed and wavelength-flexible data-driven photoacoustic oximetry

Significance: Photoacoustic imaging (PAI) promises to measure spatially-resolved blood oxygen saturation, but suffers from a lack of accurate and robust spectral unmixing methods to deliver on this promise. Accurate blood oxygenation estimation could have important clinical applications, from cancer detection to quantifying inflammation. Aim: This study addresses the inflexibility of existing data-driven methods for estimating blood oxygenation in PAI by introducing a recurrent neural network architecture. Approach: We created 25 simulated training dataset variations to assess neural network performance. We used a long short-term memory network to implement a wavelength-flexible network architecture and proposed the Jensen-Shannon divergence to predict the most suitable training dataset. Results: The network architecture can handle arbitrary input wavelengths and outperforms linear unmixing and the previously proposed learned spectral decolouring method. Small changes in the training data significantly affect the accuracy of our method, but we find that the Jensen-Shannon divergence correlates with the estimation error and is thus suitable for predicting the most appropriate training datasets for any given application. Conclusions: A flexible data-driven network architecture combined with the Jensen-Shannon Divergence to predict the best training data set provides a promising direction that might enable robust data-driven photoacoustic oximetry for clinical use cases.

physics.med-ph↗