SearcharxivSearch

arXiv subjects

L. A. Torres

Publications and source records attributed to L. A. Torres.

5 recordsLinked to original sources

Evaluation of computational and energy performance in matrix multiplication algorithms on CPU and GPU using MKL, cuBLAS and SYCL

Matrix multiplication is fundamental in the backpropagation algorithm used to train deep neural network models. Libraries like Intel's MKL or NVIDIA's cuBLAS implemented new and optimized matrix multiplication techniques that increase performance and reduce computational costs. These techniques can also be implemented in CUDA and SYCL and functions with AVX2 and AVX512 instructions, which have lower performance but better precision. The study compares execution times and power consumption using PAPI and PERF and compares accuracy for different matrix sizes. Comparisons were made on architectures such as third and fourth-generation Intel CPUs and NVIDIA V100 and A100 GPUs. The MKL library showed the best performance with a slight loss of precision, while OpenMP and SYCL on the CPU implementation showed the best accuracy but a loss of performance. On the other hand, the results on GPU showed that cuBLAS with tensor cores had the best performance; however, it had a cost in accuracy. The cuBLAS library without these specialized cores shows minimal performance loss and much higher accuracy. The data obtained on different architectures showed that the CPU could achieve performance close to that obtained on the GPU with increased power consumption. These results are conditional on certain hardware specifications, such as the number of cores, clock frequency, processor generation for the CPU, and the speed and bandwidth of the PCI bus and device architecture (compute capability) for the GPU.

cs.DC

Gravitational lensing with $ f(χ)=χ^{3/2} $ gravity in accordance with astrophysical observations

In this article we perform a second order perturbation analysis of the gravitational metric theory of gravity $ f(χ) = χ^{3/2} $ developed by Bernal et al. (2011). We show that the theory accounts in detail for two observational facts: (1) the phenomenology of flattened rotation curves associated to the Tully-Fisher relation observed in spiral galaxies, and (2) the details of observations of gravitational lensing in galaxies and groups of galaxies, without the need of any dark matter. We show how all dynamical observations on flat rotation curves and gravitational lensing can be synthesised in terms of the empirically required metric coefficients of any metric theory of gravity. We construct the corresponding metric components for the theory presented at second order in perturbation, which are shown to be perfectly compatible with the empirically derived ones. It is also shown that under the theory being presented, in order to obtain a complete full agreement with the observational results, a specific signature of Riemann's tensor has to be chosen. This signature corresponds to the one most widely used nowadays in relativity theory. Also, a computational program, the MEXICAS (Metric EXtended-gravity Incorporated through a Computer Algebraic System) code, developed for its usage in the Computer Algebraic System (CAS) Maxima for working out perturbations on a metric theory of gravity, is presented and made publicly available.

astro-ph.CO

A cosmological dust model with extended f(chi) gravity

Introducing a fundamental constant of nature with dimensions of acceleration into the theory of gravity makes it possible to extend gravity in a very consistent manner. At the non-relativistic level a MOND-like theory with a modification in the force sector is obtained, which is the limit of a very general metric relativistic theory of gravity. Since the mass and length scales involved in the dynamics of the whole universe require small accelerations of the order of Milgrom's acceleration constant a_0, it turns out that the relativistic theory of gravity can be used to explain the expansion of the universe. In this work it is explained how to use that relativistic theory of gravity in such a way that the overall large-scale dynamics of the universe can be treated in a pure metric approach without the need to introduce dark matter and/or dark energy components.

astro-ph.CO

High-gain nonlinear observer for simple genetic regulation process

High-gain nonlinear observers occur in the nonlinear automatic control theory and are in standard usage in chemical engineering processes. We apply such a type of analysis in the context of a very simple one-gene regulation circuit. In general, an observer combines an analytical differential-equation-based model with partial measurement of the system in order to estimate the non-measured state variables. We use one of the simplest observers, that of Gauthier et al., which is a copy of the original system plus a correction term which is easy to calculate. For the illustration of this procedure, we employ a biological model, recently adapted from Goodwin's old book by De Jong, in which one plays with the dynamics of the concentrations of the messenger RNA coding for a given protein, the protein itself, and a single metabolite. Using the observer instead of the metabolite, it is possible to rebuild the non-measured concentrations of the mRNA and the protein

q-bio.QM

Nonlinear software sensor for monitoring genetic regulation processes with noise and modeling errors

Nonlinear control techniques by means of a software sensor that are commonly used in chemical engineering could be also applied to genetic regulation processes. We provide here a realistic formulation of this procedure by introducing an additive white Gaussian noise, which is usually found in experimental data. Besides, we include model errors, meaning that we assume we do not know the nonlinear regulation function of the process. In order to illustrate this procedure, we employ the Goodwin dynamics of the concentrations [B.C. Goodwin, Temporal Oscillations in Cells, (Academic Press, New York, 1963)] in the simple form recently applied to single gene systems and some operon cases [H. De Jong, J. Comp. Biol. 9, 67 (2002)], which involves the dynamics of the mRNA, given protein, and metabolite concentrations. Further, we present results for a three gene case in co-regulated sets of transcription units as they occur in prokaryotes. However, instead of considering their full dynamics, we use only the data of the metabolites and a designed software sensor. We also show, more generally, that it is possible to rebuild the complete set of nonmeasured concentrations despite the uncertainties in the regulation function or, even more, in the case of not knowing the mRNA dynamics. In addition, the rebuilding of concentrations is not affected by the perturbation due to the additive white Gaussian noise and also we managed to filter the noisy output of the biological system

physics.bio-ph