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L. de Arcangelis

Publications and source records attributed to L. de Arcangelis.

At least 19 recordsLinked to original sources

Maximum entropy models of neuronal populations at and off criticality

Empirical evidence of scaling behaviors in neuronal avalanches suggests that neuronal populations in the brain operate near criticality. Departure from scaling in neuronal avalanches has been used as a measure of distance to criticality and linked to brain disorders. A distinct line of evidence for brain criticality has come from thermodynamic signatures in maximum entropy (ME) models. Both of these approaches have been widely applied to the analysis of neuronal data. However, the relationship between deviations from avalanche criticality and thermodynamics of ME models of neuronal populations remains poorly understood. To address this question, we study spontaneous activity of organotypic rat cortex slice cultures in physiological and drug-induced hypo- or hyper-excitable conditions, which are classified as critical, subcritical and supercritical based on avalanche dynamics. We find that static ME models inferred from critical cultures show signatures of criticality in thermodynamic quantities, e.g. specific heat. However, such signatures are also present and equally strong in models inferred from supercritical cultures -- despite their altered dynamics and poor functional performance. On the contrary, ME models inferred from subcritical cultures do not show thermodynamic hints of criticality. Importantly, we confirm these results using an interpretable neural network model that can be tuned to and away from avalanche criticality. Our findings indicate that static maximum entropy models, although not constraining dynamical features, correctly distinguish subcritical from critical/supercritical systems. However, they may not be able to discriminate between avalanche criticality and supercriticality, suggesting that dynamics is relevant to capture the supercritical behavior and distinguish it from criticality.

q-bio.NC↗

Rheology of dense vibrated granular flows: non-monotonic response controlled by granular temperature

We study the rheology of dense granular materials subjected to vertical vibration {by} using numerical simulations of a stress-imposed vane rheometer. The effective viscosity increases with confining pressure, decreases with vibration amplitude, and exhibits a non-monotonic dependence on frequency: weakening is observed at intermediate frequencies but is lost at high frequencies. We show that the rheological response is governed by the balance between grain-scale agitation energy and the stabilizing effect of confinement. This framework reconciles previously observed trends in viscosity and friction weakening and emphasizes the central role of energy injection and dissipation in determining granular flow properties under vibration.

cond-mat.soft↗

Fluctuation-Dissipation Relations in the imbalanced Wilson-Cowan model

The relation between spontaneous and stimulated brain activity is a fundamental question in neuroscience, which has received wide attention in experimental studies. Recently, it has been suggested that the evoked response to external stimuli can be predicted from temporal correlations of spontaneous activity. Previous theoretical results, confirmed by the comparison with MEG data for human brains, were obtained for the Wilson-Cowan model in the condition of balance of excitation and inhibition, signature of a healthy brain. Here we extend previous studies to imbalanced conditions, by examining a region of parameter space around the balanced fixed point. Analytical results are compared to numerical simulations of Wilson-Cowan networks. We evidence that in imbalance conditions the functional form of the time correlation and response functions can show several behaviors, exhibiting also an oscillating regime caused by the emergence of complex eigenvalues. The analytical predictions are fully in agreement with numerical simulations, validating the role of cross-correlations in the response function. Furthermore, we identify the leading role of inhibitory neurons in controlling the overall activity of the system, tuning the level of excitability and imbalance.

cond-mat.dis-nn↗

Getting hotter by heating less: How driven granular materials dissipate energy in excess

We investigate how the kinetic energy acquired by a dense granular system driven by an external vibration depends on the input energy. Our focus is on the dependence of the granular behavior on two main parameters: frequency and vibration amplitude. We find that there exists an optimal forcing frequency, at which the system reaches the maximal kinetic energy: if the input energy is increased beyond such a threshold, the system dissipates more and more energy and recovers a colder and more viscous state. Quite surprisingly, the nonmonotonic behavior is found for vibration amplitudes which are sufficiently small to keep the system always in contact with the driving oscillating plate. Studying dissipative properties of the system, we unveil a striking difference between this nonmonotonic behavior and a standard resonance mechanism. This feature is also observed at the microscopic scale of the single-grain dynamics and can be interpreted as an instance of negative specific heat. An analytically solvable model based on a generalized forced-damped oscillator well reproduces the observed phenomenology, illustrating the role of the competing effects of forcing and dissipation.

cond-mat.soft↗

On the role of anaxonic local neurons in the crossover to continuously varying exponents for avalanche activity

Local anaxonic neurons with graded potential release are important ingredients of nervous systems, present in the olfactory bulb system of mammalians, in the human visual system, as well as in arthropods and nematodes. We develop a neuronal network model including both axonic and anaxonic neurons and monitor the activity tuned by the following parameters: The decay length of the graded potential in local neurons, the fraction of local neurons, the largest eigenvalue of the adjacency matrix and the range of connections of the local neurons. Tuning the fraction of local neurons, we derive the phase diagram including two transition lines: A critical line separating subcritical and supercritical regions, characterized by power law distributions of avalanche sizes and durations, and a bifurcation line. We find that the overall behavior of the system is controlled by a parameter tuning the relevance of local neuron transmission with respect to the axonal one. The statistical properties of spontaneous activity are affected by local neurons at large fractions and in the condition that the graded potential transmission dominates the axonal one. In this case the scaling properties of spontaneous activity exhibit continuously varying exponents, rather than the mean field branching model universality class.

q-bio.NC↗

Predicting brain evoked response to external stimuli from temporal correlations of spontaneous activity

The relation between spontaneous and stimulated global brain activity is a fundamental problem in the understanding of brain functions. This question is investigated both theoretically and experimentally within the context of nonequilibrium fluctuation-dissipation relations. We consider the stochastic coarse-grained Wilson-Cowan model in the linear noise approximation and compare analytical results to experimental data from magnetoencephalography (MEG) of human brain. The short time behavior of the autocorrelation function for spontaneous activity is characterized by a double-exponential decay, with two characteristic times, differing by two orders of magnitude. Conversely, the response function exhibits a single exponential decay in agreement with experimental data for evoked activity under visual stimulation. Results suggest that the brain response to weak external stimuli can be predicted from the observation of spontaneous activity and pave the way to controlled experiments on the brain response under different external perturbations.

q-bio.NC↗

Induced and endogenous acoustic oscillations in granular faults

The frictional properties of disordered systems are affected by external perturbations. These perturbations usually weaken the system by reducing the macroscopic friction coefficient. This friction reduction is of particular interest in the case of disordered systems composed of granular particles confined between two plates, as this is a simple model of seismic fault. Indeed, in the geophysical context frictional weakening could explain the unexpected weakness of some faults, as well as earthquake remote triggering. In this manuscript we review recent results concerning the response of confined granular systems to external perturbations, considering the different mechanisms by which the perturbation could weaken a system, the relevance of the frictional reduction to earthquakes, as well as discussing the intriguing scenario whereby the weakening is not monotonic in the perturbation frequency, so that a re-entrant transition is observed, as the system first enters a fluidized state and then returns to a frictional state.

cond-mat.soft↗

Avalanche Dynamics and Correlations in Neural Systems

The existence of power-law distributions is only a first requirement in the validation of the critical behavior of a system. Long-range spatio-temporal correlations are fundamental for the spontaneous neuronal activity to be the expression of a system acting close to a critical point. This chapter focuses on temporal correlations and avalanche dynamics in the spontaneous activity of cortex slice cultures and in the resting fMRI BOLD signal. Long-range correlations are investigated by means of the scaling of power spectra and of Detrended Fluctuations Analysis. The existence of 1/f decay in the power spectrum, as well as of power-law scaling in the root mean square fluctuations function for the appropriate balance of excitation and inhibition suggests that long-range temporal correlations are distinctive of "healthy brains". The corresponding temporal organization of neuronal avalanches can be dissected by analyzing the distribution of inter-event times between successive events. In rat cortex slice cultures this distribution exhibits a non-monotonic behavior, not usually found in other natural processes. Numerical simulations provide evidences that this behavior is a consequence of the alternation between states of high and low activity, leading to a dynamic balance between excitation and inhibition that tunes the system at criticality. In this scenario, inter-times show a peculiar relation with avalanche sizes, resulting in a hierarchical structure of avalanche sequences. Large avalanches correspond to low-frequency oscillations, and trigger cascades of smaller avalanches that are part of higher frequency rhythms. The self-regulated balance of excitation and inhibition observed in cultures is confirmed at larger scales, i.e. on fMRI data from resting brain activity, and appears to be closely related to critical features of avalanche activity.

cond-mat.stat-mech↗

Controlled viscosity in dense granular materials

We experimentally investigate the fluidization of a granular material subject to mechanical vibrations by monitoring the angular velocity of a vane suspended in the medium and driven by an external motor. On increasing the frequency we observe a re-entrant transition, as a jammed system first enters a fluidized state, where the vane rotates with high constant velocity, and then returns to a frictional state, where the vane velocity is much lower. While the fluidization frequency is material independent, the viscosity recovery frequency shows a clear dependence on the material, that we rationalize by relating this frequency to the balance between dissipative and inertial forces in the system. Molecular dynamics simulations well reproduce the experimental data, confirming the suggested theoretical picture.

cond-mat.soft↗

Synchronized oscillations and acoustic fluidization in confined granular materials

According to the acoustic fluidization hypothesis, elastic waves at a characteristic frequency form inside seismic faults even in the absence of an external perturbation. These waves are able to generate a normal stress which contrasts the confining pressure and promotes failure. Here, we study the mechanisms responsible for this wave activation via numerical simulations of a granular fault model. We observe the particles belonging to the percolating backbone, which sustains the stress, to perform synchronized oscillations over ellipticlike trajectories in the fault plane. These oscillations occur at the characteristic frequency of acoustic fluidization. As the applied shear stress increases, these oscillations become perpendicular to the fault plane just before the system fails, opposing the confining pressure, consistently with the acoustic fluidization scenario. The same change of orientation can be induced by external perturbations at the acoustic fluidization frequency.

cond-mat.stat-mech↗

Critical neural networks with short and long term plasticity

In recent years self organised critical neuronal models have provided insights regarding the origin of the experimentally observed avalanching behaviour of neuronal systems. It has been shown that dynamical synapses, as a form of short-term plasticity, can cause critical neuronal dynamics. Whereas long-term plasticity, such as hebbian or activity dependent plasticity, have a crucial role in shaping the network structure and endowing neural systems with learning abilities. In this work we provide a model which combines both plasticity mechanisms, acting on two different time-scales. The measured avalanche statistics are compatible with experimental results for both the avalanche size and duration distribution with biologically observed percentages of inhibitory neurons. The time-series of neuronal activity exhibits temporal bursts leading to 1/f decay in the power spectrum. The presence of long-term plasticity gives the system the ability to learn binary rules such as XOR, providing the foundation of future research on more complicated tasks such as pattern recognition.

nlin.AO↗

Synaptic plasticity and neuronal refractory time cause scaling behaviour of neuronal avalanches

Neuronal avalanches measured in vitro and in vivo in different cortical networks consistently exhibit power law behaviour for the size and duration distributions with exponents typical for a mean field self-organized branching process. These exponents are also recovered in neuronal network simulations implementing various neuronal dynamics on different network topologies. They can therefore be considered a very robust feature of spontaneous neuronal activity. Interestingly, this scaling behaviour is also observed on regular lattices in finite dimensions, which raises the question about the origin of the mean field behaviour observed experimentally. In this study we provide an answer to this open question by investigating the effect of activity dependent plasticity in combination with the neuronal refractory time in a neuronal network. Results show that the refractory time hinders backward avalanches forcing a directed propagation. Hebbian plastic adaptation plays the role of sculpting these directed avalanche patterns into the topology of the network slowly changing it into a branched structure where loops are marginal.

q-bio.NC↗

Modelling the influence of photospheric turbulence on solar flare statistics

Solar flares stem from the reconnection of twisted magnetic field lines in the solar photosphere. The energy and waiting time distributions of these events follow complex patterns that have been carefully considered in the past and that bear some resemblance with earthquakes and stockmarkets. Here we explore in detail the tangling motion of interacting flux tubes anchored in the plasma and the energy ejections resulting when they recombine. The mechanism for energy accumulation and release in the flow is reminiscent of self-organized criticality. From this model we suggest the origin for two important and widely studied properties of solar flare statistics, including the time-energy correlations. We first propose that the scale-free energy distribution of solar flares is largely due to the twist exerted by the vorticity of the turbulent photosphere. Second, the long-range temporal and time-energy correlations appear to arise from the tube-tube interactions. The agreement with satellite measurements is encouraging.

astro-ph.SR↗

The balance between excitation and inhibition controls the temporal organization of neuronal avalanches

Neuronal avalanches, measured in vitro and in vivo, exhibit a robust critical behaviour. Their temporal organization hides the presence of correlations. Here we present experimental measurements of the waiting time distribution between successive avalanches in the rat cortex in vitro. This exhibits a non-monotonic behaviour, not usually found in other natural processes. Numerical simulations provide evidence that this behaviour is a consequence of the alternation between states of high and low activity, named up and down states, leading to a balance between excitation and inhibition controlled by a single parameter. During these periods both the single neuron state and the network excitability level, keeping memory of past activity, are tuned by homeostatic mechanisms.

q-bio.NC↗

Unjamming dynamics: the micromechanics of a seismic fault model

The unjamming transition of granular systems is investigated in a seismic fault model via three dimensional Molecular Dynamics simulations. A two--time force--force correlation function, and a susceptibility related to the system response to pressure changes, allow to characterize the stick--slip dynamics, consisting in large slips and microslips leading to creep motion. The correlation function unveils the micromechanical changes occurring both during microslips and slips. The susceptibility encodes the magnitude of the incoming microslip.

cond-mat.soft↗

The role of static stress diffusion in the spatio-temporal organization of aftershocks

We investigate the spatial distribution of aftershocks and we find that aftershock linear density exhibits a maximum, that depends on the mainshock magnitude, followed by a power law decay. The exponent controlling the asymptotic decay and the fractal dimensionality of epicenters clearly indicate triggering by static stress. The non monotonic behavior of the linear density and its dependence on the mainshock magnitude can be interpreted in terms of diffusion of static stress. This is supported by the power law growth with exponent $H\simeq 0.5$ of the average main-aftershock distance. Implementing static stress diffusion within a stochastic model for aftershock occurrence we are able to reproduce aftershock linear density spatial decay, its dependence on the mainshock magnitude and its evolution in time.

physics.geo-ph↗

Reentrant phase diagram and pH effects in cross-linked gelatin gels

Experimental results have shown that the kinetics of bond formation in chemical crosslinking of gelatin solutions is strongly affected not only by gelatin and reactant concentrations but also by the solution pH. We present an extended numerical investigation of the phase diagram and of the kinetics of bond formation as a function of the pH, via Monte Carlo simulations of a lattice model for gelatin chains and reactant agent in solution. We find a reentrant phase diagram, namely gelation can be hindered either by loop formation, at low reactant concentrations, or by saturation of active sites of the chains via formation of single bonds with crosslinkers, at high reactant concentrations. The ratio of the characteristic times for the formation of the first and of the second bond between the crosslinker and an active site of a chain is found to depend on the reactant reactivity, in good agreement with experimental data.

cond-mat.soft↗

Modelling the brain as a n Apollonian network

Networks of living neurons exhibit an avalanche mode of activity, experimentally found in organotypic cultures. Moreover, experimental studies of morphology indicate that neurons develop a network of small-world-like connections, with the possibility of very high connectivity degree. Here we study a recent model based on self-organized criticality, which consists of an electrical network with threshold firing and activity-dependent synapse strengths. We study the model on a scale-free network, the Apollonian network, which presents many features of neuronal systems. The system exhibits a power law distributed avalanche activity. The analysis of the power spectra of the electrical signal reproduces very robustly the power law behaviour with the exponent 0.8, experimentally measured in electroencephalograms (EEG) spectra. The exponents are found to be quite stable with respect to initial configurations and strength of plastic remodelling, indicating that universality holds for a wide class of brain models.

q-bio.NC↗