Searcharxiv⌕ Search

arXiv subjects

Larry Wasserman

Publications and source records attributed to Larry Wasserman.

At least 127 records · Page 7Linked to original sources

Efficient Sparse Clustering of High-Dimensional Non-spherical Gaussian Mixtures

We consider the problem of clustering data points in high dimensions, i.e. when the number of data points may be much smaller than the number of dimensions. Specifically, we consider a Gaussian mixture model (GMM) with non-spherical Gaussian components, where the clusters are distinguished by only a few relevant dimensions. The method we propose is a combination of a recent approach for learning parameters of a Gaussian mixture model and sparse linear discriminant analysis (LDA). In addition to cluster assignments, the method returns an estimate of the set of features relevant for clustering. Our results indicate that the sample complexity of clustering depends on the sparsity of the relevant feature set, while only scaling logarithmically with the ambient dimension. Additionally, we require much milder assumptions than existing work on clustering in high dimensions. In particular, we do not require spherical clusters nor necessitate mean separation along relevant dimensions.

math.ST↗

Feature Selection For High-Dimensional Clustering

We present a nonparametric method for selecting informative features in high-dimensional clustering problems. We start with a screening step that uses a test for multimodality. Then we apply kernel density estimation and mode clustering to the selected features. The output of the method consists of a list of relevant features, and cluster assignments. We provide explicit bounds on the error rate of the resulting clustering. In addition, we provide the first error bounds on mode based clustering.

math.ST↗

Subsampling Methods for Persistent Homology

Persistent homology is a multiscale method for analyzing the shape of sets and functions from point cloud data arising from an unknown distribution supported on those sets. When the size of the sample is large, direct computation of the persistent homology is prohibitive due to the combinatorial nature of the existing algorithms. We propose to compute the persistent homology of several subsamples of the data and then combine the resulting estimates. We study the risk of two estimators and we prove that the subsampling approach carries stable topological information while achieving a great reduction in computational complexity.

math.AT↗

Generalized Mode and Ridge Estimation

The generalized density is a product of a density function and a weight function. For example, the average local brightness of an astronomical image is the probability of finding a galaxy times the mean brightness of the galaxy. We propose a method for studying the geometric structure of generalized densities. In particular, we show how to find the modes and ridges of a generalized density function using a modification of the mean shift algorithm and its variant, subspace constrained mean shift. Our method can be used to perform clustering and to calculate a measure of connectivity between clusters. We establish consistency and rates of convergence for our estimator and apply the methods to data from two astronomical problems.

stat.ME↗

Nonparametric Estimation of Renyi Divergence and Friends

We consider nonparametric estimation of $L_2$, Renyi-$α$ and Tsallis-$α$ divergences between continuous distributions. Our approach is to construct estimators for particular integral functionals of two densities and translate them into divergence estimators. For the integral functionals, our estimators are based on corrections of a preliminary plug-in estimator. We show that these estimators achieve the parametric convergence rate of $n^{-1/2}$ when the densities' smoothness, $s$, are both at least $d/4$ where $d$ is the dimension. We also derive minimax lower bounds for this problem which confirm that $s > d/4$ is necessary to achieve the $n^{-1/2}$ rate of convergence. We validate our theoretical guarantees with a number of simulations.

stat.ML↗

Functional Regression for Quasar Spectra

The Lyman-alpha forest is a portion of the observed light spectrum of distant galactic nuclei which allows us to probe remote regions of the Universe that are otherwise inaccessible. The observed Lyman-alpha forest of a quasar light spectrum can be modeled as a noisy realization of a smooth curve that is affected by a `damping effect' which occurs whenever the light emitted by the quasar travels through regions of the Universe with higher matter concentration. To decode the information conveyed by the Lyman-alpha forest about the matter distribution, we must be able to separate the smooth `continuum' from the noise and the contribution of the damping effect in the quasar light spectra. To predict the continuum in the Lyman-alpha forest, we use a nonparametric functional regression model in which both the response and the predictor variable (the smooth part of the damping-free portion of the spectrum) are function-valued random variables. We demonstrate that the proposed method accurately predicts the unobservable continuum in the Lyman-alpha forest both on simulated spectra and real spectra. Also, we introduce distribution-free prediction bands for the nonparametric functional regression model that have finite sample guarantees. These prediction bands, together with bootstrap-based confidence bands for the projection of the mean continuum on a fixed number of principal components, allow us to assess the degree of uncertainty in the model predictions.

stat.ME↗

Statistical Analysis of Metric Graph Reconstruction

A metric graph is a 1-dimensional stratified metric space consisting of vertices and edges or loops glued together. Metric graphs can be naturally used to represent and model data that take the form of noisy filamentary structures, such as street maps, neurons, networks of rivers and galaxies. We consider the statistical problem of reconstructing the topology of a metric graph embedded in R^D from a random sample. We derive lower and upper bounds on the minimax risk for the noiseless case and tubular noise case. The upper bound is based on the reconstruction algorithm given in Aanjaneya et al. (2012).

math.ST↗

On the Bootstrap for Persistence Diagrams and Landscapes

Persistent homology probes topological properties from point clouds and functions. By looking at multiple scales simultaneously, one can record the births and deaths of topological features as the scale varies. In this paper we use a statistical technique, the empirical bootstrap, to separate topological signal from topological noise. In particular, we derive confidence sets for persistence diagrams and confidence bands for persistence landscapes.

math.AT↗

Nonparametric 3D map of the IGM using the Lyman-alpha forest

Visualizing the high-redshift Universe is difficult due to the dearth of available data; however, the Lyman-alpha forest provides a means to map the intergalactic medium at redshifts not accessible to large galaxy surveys. Large-scale structure surveys, such as the Baryon Oscillation Spectroscopic Survey (BOSS), have collected quasar (QSO) spectra that enable the reconstruction of HI density fluctuations. The data fall on a collection of lines defined by the lines-of-sight (LOS) of the QSO, and a major issue with producing a 3D reconstruction is determining how to model the regions between the LOS. We present a method that produces a 3D map of this relatively uncharted portion of the Universe by employing local polynomial smoothing, a nonparametric methodology. The performance of the method is analyzed on simulated data that mimics the varying number of LOS expected in real data, and then is applied to a sample region selected from BOSS. Evaluation of the reconstruction is assessed by considering various features of the predicted 3D maps including visual comparison of slices, PDFs, counts of local minima and maxima, and standardized correlation functions. This 3D reconstruction allows for an initial investigation of the topology of this portion of the Universe using persistent homology.

astro-ph.IM↗

Nonparametric Inference For Density Modes

We derive nonparametric confidence intervals for the eigenvalues of the Hessian at modes of a density estimate. This provides information about the strength and shape of modes and can also be used as a significance test. We use a data-splitting approach in which potential modes are identified using the first half of the data and inference is done with the second half of the data. To get valid confidence sets for the eigenvalues, we use a bootstrap based on an elementary-symmetric-polynomial (ESP) transformation. This leads to valid bootstrap confidence sets regardless of any multiplicities in the eigenvalues. We also suggest a new method for bandwidth selection, namely, choosing the bandwidth to maximize the number of significant modes. We show by example that this method works well. Even when the true distribution is singular, and hence does not have a density, (in which case cross validation chooses a zero bandwidth), our method chooses a reasonable bandwidth.

stat.ME↗

Uncertainty Measures and Limiting Distributions for Filament Estimation

A filament is a high density, connected region in a point cloud. There are several methods for estimating filaments but these methods do not provide any measure of uncertainty. We give a definition for the uncertainty of estimated filaments and we study statistical properties of the estimated filaments. We show how to estimate the uncertainty measures and we construct confidence sets based on a bootstrapping technique. We apply our methods to astronomy data and earthquake data.

stat.ME↗

Stochastic Convergence of Persistence Landscapes and Silhouettes

Persistent homology is a widely used tool in Topological Data Analysis that encodes multiscale topological information as a multi-set of points in the plane called a persistence diagram. It is difficult to apply statistical theory directly to a random sample of diagrams. Instead, we can summarize the persistent homology with the persistence landscape, introduced by Bubenik, which converts a diagram into a well-behaved real-valued function. We investigate the statistical properties of landscapes, such as weak convergence of the average landscapes and convergence of the bootstrap. In addition, we introduce an alternate functional summary of persistent homology, which we call the silhouette, and derive an analogous statistical theory.

math.ST↗

Estimating Undirected Graphs Under Weak Assumptions

We consider the problem of providing nonparametric confidence guarantees for undirected graphs under weak assumptions. In particular, we do not assume sparsity, incoherence or Normality. We allow the dimension $D$ to increase with the sample size $n$. First, we prove lower bounds that show that if we want accurate inferences with low assumptions then there are limitations on the dimension as a function of sample size. When the dimension increases slowly with sample size, we show that methods based on Normal approximations and on the bootstrap lead to valid inferences and we provide Berry-Esseen bounds on the accuracy of the Normal approximation. When the dimension is large relative to sample size, accurate inferences for graphs under low assumptions are not possible. Instead we propose to estimate something less demanding than the entire partial correlation graph. In particular, we consider: cluster graphs, restricted partial correlation graphs and correlation graphs.

math.ST↗

Orbital Parameters for the Two Young Binaries VSB 111 and VSB 126

We report orbital parameters for two low-mass, pre-main sequence, double-lined spectroscopic binaries VSB 111 and VSB 126. These systems were originally identified as single-lined on the basis of visible-light observations. We obtained high-resolution, infrared spectra with the 10-m Keck II telescope, detected absorption lines of the secondary stars, and measured radial velocities of both components in the systems. The visible light spectra were obtained on the 1.5-m Wyeth reflector at the Oak Ridge Observatory, the 1.5-m Tillinghast reflector at the F. L. Whipple Observatory, and the 4.5-m equivalent Multiple Mirror Telescope. The combination of our visible and infrared observations of VSB 111 leads to a period of 902.1+/-0.9 days, an eccentricity of 0.788+/-0.008, and a mass ratio of 0.52+/-0.05. VSB 126 has a period of 12.9244+/-0.0002 days, an eccentricity of 0.18+/-0.02, and a mass ratio of 0.29+/-0.02. Visible-light photometry, using the 0.8-m telescope at Lowell Observatory, provided rotation periods for the primary stars in both systems, 3.74+/-0.02 days for VSB 111 and 5.71+/-0.07 days for VSB 126. Both binaries are located in the young, active star-forming cluster NGC 2264 at a distance of ~800 pc. The difference in the center-of-mass velocities of the two systems is consistent with the radial velocity gradient seen across NGC 2264. To test the evolutionary models for accuracy and consistency, we compare the stellar properties derived from several sets of theoretical calculations for pre-main sequence evolution with our dynamical results.

astro-ph.SR↗

Tight Lower Bounds for Homology Inference

The homology groups of a manifold are important topological invariants that provide an algebraic summary of the manifold. These groups contain rich topological information, for instance, about the connected components, holes, tunnels and sometimes the dimension of the manifold. In earlier work, we have considered the statistical problem of estimating the homology of a manifold from noiseless samples and from noisy samples under several different noise models. We derived upper and lower bounds on the minimax risk for this problem. In this note we revisit the noiseless case. In previous work we used Le Cam's lemma to establish a lower bound that differed from the upper bound of Niyogi, Smale and Weinberger by a polynomial factor in the condition number. In this note we use a different construction based on the direct analysis of the likelihood ratio test to show that the upper bound of Niyogi, Smale and Weinberger is in fact tight, thus establishing rate optimal asymptotic minimax bounds for the problem. The techniques we use here extend in a straightforward way to the noisy settings considered in our earlier work.

stat.ML↗

Cluster Trees on Manifolds

In this paper we investigate the problem of estimating the cluster tree for a density $f$ supported on or near a smooth $d$-dimensional manifold $M$ isometrically embedded in $\mathbb{R}^D$. We analyze a modified version of a $k$-nearest neighbor based algorithm recently proposed by Chaudhuri and Dasgupta. The main results of this paper show that under mild assumptions on $f$ and $M$, we obtain rates of convergence that depend on $d$ only but not on the ambient dimension $D$. We also show that similar (albeit non-algorithmic) results can be obtained for kernel density estimators. We sketch a construction of a sample complexity lower bound instance for a natural class of manifold oblivious clustering algorithms. We further briefly consider the known manifold case and show that in this case a spatially adaptive algorithm achieves better rates.

stat.ML↗

Minimax Theory for High-dimensional Gaussian Mixtures with Sparse Mean Separation

While several papers have investigated computationally and statistically efficient methods for learning Gaussian mixtures, precise minimax bounds for their statistical performance as well as fundamental limits in high-dimensional settings are not well-understood. In this paper, we provide precise information theoretic bounds on the clustering accuracy and sample complexity of learning a mixture of two isotropic Gaussians in high dimensions under small mean separation. If there is a sparse subset of relevant dimensions that determine the mean separation, then the sample complexity only depends on the number of relevant dimensions and mean separation, and can be achieved by a simple computationally efficient procedure. Our results provide the first step of a theoretical basis for recent methods that combine feature selection and clustering.

stat.ML↗