arXiv subjects

Laura E. Jones

Publications and source records attributed to Laura E. Jones.

8 recordsLinked to original sources

arXiv2015

The puzzle of sub-maximal resource use by a parasitoid wasp

When there is conspicuous under-exploitation of a limited resource, it is worth asking what mechanisms allow presumably valuable resources to be left unused? Evolutionary biologists have generated a wide range of hypotheses to explain this, ranging from interdemic group selection to selfishly prudent individual restraint. We consider a situation in which, in spite of high intraspecific competition, individuals leave most of a key resource unexploited. The parasitic wasp that does this finds virtually all host egg clusters in a landscape, but parasitizes only about a third of the eggs in each, and then leaves a deterrent mark around the cluster. We first test, and reject, a series of system-specific simple constraints that might limit full host exploitation, such as asynchronous maturation of host eggs. We then consider classical hypotheses for the evolution of restraint. Prudent predation and bet-hedging fail as explanations because the wasp lives as a large well-mixed population. Also, we find no individual benefits to the parasitoid of developing in a sparsely parasitized host nest. However an optimal foraging model, including empirically measured costs of superparasitism and hyperparasitism, can explain through individual selection, both the consistently low rate of parasitism and marking.

q-bio.PE↗

arXiv2013

Individual behavioral rules sustain the cell allocation pattern in the combs of honey bee colonies (Apis mellifera)

In the beeswax combs of honey bees, the cells of brood, pollen, and honey have a consistent spatial pattern that is sustained throughout the life of a colony. This spatial pattern is believed to emerge from simple behavioral rules that specify how the queen moves, where foragers deposit honey/pollen and how honey/pollen is consumed from cells. Prior work has shown that a set of such rules can explain the formation of the allocation pattern starting from an empty comb. We show that these rules cannot maintain the pattern once the brood start to vacate their cells, and we propose new, biologically realistic rules that better sustain the observed allocation pattern. We analyze the three resulting models by performing hundreds of simulation runs over many gestational periods and a wide range of parameter values. We develop new metrics for pattern assessment and employ them in analyzing pattern retention over each simulation run. Applied to our simulation results, these metrics show alteration of an accepted model for honey/pollen consumption based on local information can stabilize the cell allocation pattern over time. We also show that adding global information, by biasing the queen's movements towards the center of the comb, expands the parameter regime over which pattern retention occurs.

q-bio.PE↗

arXiv2012

Rapid contemporary evolution and clonal food web dynamics

Character evolution that affects ecological community interactions often occurs contemporaneously with temporal changes in population size, potentially altering the very nature of those dynamics. Such eco-evolutionary processes may be most readily explored in systems with short generations and simple genetics. Asexual and cyclically parthenogenetic organisms such as microalgae, cladocerans, and rotifers, which frequently dominate freshwater plankton communities, meet these requirements. Multiple clonal lines can coexist within each species over extended periods, until either fixation occurs or a sexual phase reshuffles the genetic material. When clones differ in traits affecting interspecific interactions, within-species clonal dynamics can have major effects on the population dynamics. We first consider a simple predator-prey system with two prey genotypes, parameterized with data on a well-studied experimental system, and explore how the extent of differences in defense against predation within the prey population determine dynamic stability versus instability of the system. We then explore how increased potential for evolution affects the community dynamics in a more general community model with multiple predator and multiple prey genotypes. These examples illustrate how microevolutionary "details" that enhance or limit the potential for heritable phenotypic change can have significant effects on contemporaneous community-level dynamics and the persistence and coexistence of species.

q-bio.PE↗

arXiv2006

Effects of rapid prey evolution on predator-prey cycles

We study the qualitative properties of population cycles in a predator-prey system where genetic variability allows contemporary rapid evolution of the prey. Previous numerical studies have found that prey evolution in response to changing predation risk can have major quantitative and qualitative effects on predator-prey cycles, including: (i) large increases in cycle period, (ii) changes in phase relations (so that predator and prey are cycling exactly out of phase, rather than the classical quarter-period phase lag), and (iii) "cryptic" cycles in which total prey density remains nearly constant while predator density and prey traits cycle. Here we focus on a chemostat model motivated by our experimental system [Fussmann et al. 2000,Yoshida et al. 2003] with algae (prey) and rotifers (predators), in which the prey exhibit rapid evolution in their level of defense against predation. We show that the effects of rapid prey evolution are robust and general, and furthermore that they occur in a specific but biologically relevant region of parameter space: when traits that greatly reduce predation risk are relatively cheap (in terms of reductions in other fitness components), when there is coexistence between the two prey types and the predator, and when the interaction between predators and undefended prey alone would produce cycles. Because defense has been shown to be inexpensive, even cost-free, in a number of systems [Andersson and Levin 1999, Gagneux et al. 2006,Yoshida et al. 2004], our discoveries may well be reproduced in other model systems, and in nature. Finally, some of our key results are extended to a general model in which functional forms for the predation rate and prey birth rate are not specified.

q-bio.PE↗

arXiv2004

Opportunistic infection as a cause of transient viremia in chronically infected HIV patients under treatment with HAART

When highly active antiretroviral therapy is administered for long periods of time to HIV-1 infected patients, most patients achieve viral loads that are ``undetectable'' by standard assay (i.e., HIV-1 RNA $ < 50$ copies/ml). Yet despite exhibiting sustained viral loads below the level of detection, a number of these patients experience unexplained episodes of transient viremia or viral "blips". We propose here that transient activation of the immune system by opportunistic infection may explain these episodes of viremia. Indeed, immune activation by opportunistic infection may spur HIV replication, replenish viral reservoirs and contribute to accelerated disease progression. In order to investigate the effects of concurrent infection on chronically infected HIV patients under treatment with highly active antiretroviral therapy (HAART), we extend a simple dynamic model of the effects of vaccination on HIV infection [Jones and Perelson, JAIDS 31:369-377, 2002] to include growing pathogens. We then propose a more realistic model for immune cell expansion in the presence of pathogen, and include this in a set of competing models that allow low baseline viral loads in the presence of drug treatment. Programmed expansion of immune cells upon exposure to antigen is a feature not previously included in HIV models, and one that is especially important to consider when simulating an immune response to opportunistic infection. Using these models we show that viral blips with realistic duration and amplitude can be generated by concurrent infections in HAART treated patients.

q-bio.PE↗

arXiv2004

Evolutionary tradeoff and equilibrium in an aquatic predator-prey system

Due to the conventional distinction between ecological (rapid) and evolutionary (slow)timescales, ecological and population models to date have typically ignored the effects of evolution. Yet the potential for rapid evolutionary change has been recently established and may be critical to understanding how populations adapt to changing environments. In this paper we examine the relationship between ecological and evolutionary dynamics, focusing on a well-studied experimental aquatic predator-prey system (Fussmann et al. 2000; Shertzer et al. 2002; Yoshida et al. 2003). Major properties of predator-prey cycles in this system are determined by ongoing evolutionary dynamics in the prey population. Under some conditions, however, the populations tend to apparently stable steady-state densities. These are the subject of the present paper. We examine a previously developed model for the system, to determine how evolution shapes properties of the equilibria, in particular the number and identity of coexisting prey genotypes. We then apply these results to explore how evolutionary dynamics can shape the responses of the system to "management": externally imposed alterations in conditions. Specifically, we compare the behavior of the system including evolutionary dynamics, with predictions that would be made if the potential for rapid evolutionary change is negelected. Finally, we posit some simple experiments to verify our prediction that evolution can have significant qualitative effects on observed population-level responses to changing conditions.

q-bio.PE↗

arXiv2001

Modeling the effects of tetanus vaccination on chronically infected HIV patients

T-cell activation plays a critical role in the initiation and propagation of HIV-1 infection and yet transient activation of the immune system is a normal response to immunization. In this study we extend a simple of model of HIV infection to include T cell activation by vaccination. We then show that the model can reproduce many but not all of the features of the post-tetanus immunization rise in viral load observed and reported on by Stanley et al., [N. Engl. J. Med., 334:1222--1230 (1996)]. Amplitudes and approximate timing of post-immunization maximum viremia were matched in nine of twelve cases; in patients with double peaks of nearly equal amplitude the later peaks were matched. Patients with single early peaks in their viremia were best fit with relatively high antigen clearance rate constants, while patients with early and late peaks in viremia of equal or nearly equal amplitude were best-fit with much lower clearance rates. The rate of clearance may depend on the level of pre-existing antibody, which in turn would be expected to depend on the time since the individual under study received a previous tetanus vaccination.

physics.bio-ph↗

arXiv1998

Earthquake source parameters and fault kinematics in the Eastern California Shear Zone

Based on waveform data from a profile of aftershocks following the north-south trace of the June 28, 1992 Landers rupture across the Mojave desert, we construct a new velocity model for the Mojave region which features a thin, slow crust. Using this model, we obtain source parameters, including depth and duration, for each of the aftershocks in the profile, and in addition, any significant (M>3.7) Joshua Tree--Landers aftershock between April, 1992 and October, 1994 for which coherent TERRAscope data were available. In all, we determine source parameters and stress-drops for 45 significant (M_w > 4) earthquakes associated with the Joshua Tree and Landers sequences, using a waveform grid-search algorithm. Stress drops for these earthquakes appear to vary systematically with location, with respect to previous seismic activity, proximity to previous rupture (i.e., with respect to the Landers rupture), and with tectonic province. In general, for areas north of the Pinto Mountain fault, stress-drops of aftershocks located off the faults involved with the Landers rupture are higher than those located on the fault, with the exception of aftershocks on the newly recognized Kickapoo (Landers) fault. Stress drops are moderate south of the Pinto Mountain fault, where there is a history of seismic swarms but no single through-going fault. In contrast to aftershocks in the eastern Transverse ranges, and related to the 1992 Big Bear, California, sequence, Landers events show no clear relationship between stress-drop and depth. Instead, higher stress-drop aftershocks appear to correlate with activity on nascent faults, or those which experienced relatively small slip during mainshock rupture.

physics.geo-ph↗