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Laurent Cognet

Publications and source records attributed to Laurent Cognet.

At least 19 recordsLinked to original sources

Resolving Scale-Dependent Diffusivity in the Brain Extracellular Space

Transport through the brain extracellular space has traditionally been summarized by effective diffusion coefficients measured over specific observation ranges. Whether local mobility remains predictive as the same molecule explores larger distances remains unresolved. Here, we track individual ultrashort carbon nanotubes in three dimensions within living hippocampal tissue, following their motion from nanometre to micrometre scales. Using freely diffusing nanotubes in water as an experimental reference, we resolve trajectory-specific crossover lengths beyond which instantaneous diffusivity decreases, with slice-level medians of 0.67 $μ$m in the pyramidal layer and 0.52 $μ$m in the radiatum. The pyramidal layer combines higher short-time diffusivity with an approximately twofold larger post-crossover restriction exponent than the radiatum ($\vartheta$ = 0.77 versus 0.38). This decoupling of local mobility from larger-scale exploration is incompatible with a scale-independent rescaling of transport, showing that effective extracellular diffusivity must be interpreted relative to the scale of exploration.

physics.bio-ph

Two Photon excitation microscopy of individual Single-Walled Carbon Nanotubes

Two-photon fluorescence imaging achieves deep-tissue penetration through long excitation wavelengths and nonlinear excitation confinement. The 1700 nm transparency window is particularly attractive, as it optimally balances tissue scattering and absorption. However, efficient fluorophores for two-photon excitation in this window remain limited. Moreover the weak near-infrared emission of individual emitters, and the low photon detection efficiency, has so far precluded single-particle imaging. Here, we characterize the two-photon excitation properties of chirality-sorted pristine and quantum color center-functionalized single-walled carbon nanotubes under 1700 nm excitation. By measuring and comparing their two-photon action cross-sections, we identify quantum color center-functionalized (6,5) nanotubes emitting at 1140 nm, as the most promising emitter, with an exceptionally large cross-section of (57 \pm 2).103 GM. Leveraging these favorable photophysical properties, we image individual nanotubes under 1700 nm excitation, to our knowledge the first demonstration of single-particle imaging at this wavelength. These results establish quantum color center-functionalized (6,5) nanotube as a strong candidate for long-wavelength two-photon imaging and lay the groundwork for deep-tissue single-particle imaging.

physics.optics

Orientational frustration drives enhanced diffusion of anisotropic particles in a liquid labyrinth

Transport of nanoscale objects in complex, structured environments plays a key role in a wide range of processes, from biomolecular dynamics in extracellular spaces to transport in porous materials such as filters and catalysts. While anomalous diffusion is well established, how particle anisotropy governs transport under geometric constraints remains unclear. Here we use 3D single-particle tracking to investigate the diffusion of stiff one-dimensional carbon nanotubes in a continuous soft matter network of interconnected chambers and constrictions. Transport is anomalous and antipersistent, with strong length dependent confinement and trapping, consistent with obstructed diffusion. Unexpectedly, however, escape from confinement is poorly sensitive to nanotube length as opposed to what would be expected of pore mediated transport. Despite a tenfold length increase and significantly enhanced trapping, escape time increased by only ~1.4. Single-particle orientational tracking reveals the origin of this weak scaling. Indeed, long nanotube, i.e. those with length comparable to the chamber dimensions, dynamically align with constrictions enabling efficient, geometry-assisted escape that offsets increased confinement while shorter nanotubes need to screen the volume to find their escape path. These results uncover an alignment-mediated transport mechanism that decouples confinement strength from escape kinetics, distinct from pore-mediated transport mechanisms, establishing a quantitative framework for anisotropic diffusion in complex environments.

cond-mat.soft

Ultrashort Carbon Nanotubes with Luminescent Color Centers are Bright NIR-II Nano-Emitters

In the fields of bioimaging, photonics, and quantum science, it is equally crucial to combine high brightness with nanoscale size in short-wave infrared (SWIR) emitters. However, such nano-emitters are currently lacking. Here, we report that when functionalized with luminescent color centers, ultrashort carbon nanotubes with length much shorter than 100 nm, are surprisingly bright in the near-infrared second-biological window (NIR-II) of the SWIR domain. We discuss the origin of this exceptional brightness based on the uncontrollable presence of quenching defects in dispersed carbon nanotubes. We further investigate the nonlinear photoluminescence behavior of color centers functionalized carbon nanotubes in response to varying excitation conditions, spanning from ensemble measurements to single-nanotube experiments. We discuss how this behavior influences the determination of their photoluminescence quantum yields, which can reach values as high as 20% for ultrashort ones detected at the single nanotube level. Notably, the corresponding NIR-II brightness exceeds that of well-known visible emitters, including quantum dots. After rendering them biocompatible, we demonstrate point-spread function engineering and high-resolution, 3-dimensional single-particle tracking using these bright ultrashort carbon nanotubes allowing nanoscale imaging in the NIR-II window within thick brain tissue.

cond-mat.mtrl-sci

A Binary Annular Phase Mask to Regulate Spherical Aberration and Allow Super-Localization in Single-Particle Tracking over Extended Depth-of-Focus

Important applications of single-particle tracking (SPT) aim at deciphering the diffusion properties of single fluorescent nanoparticles immersed in heterogeneous environments, such as multi-cellular biological tissues. To maximize the particle localization precision in such complex environments, high numerical aperture objectives are often required, which intrinsically restrict depth-of-focus (DOF) to less than a micrometer and impedes recording long trajectories when particles escape the plane of focus. In this work, we show that a simple binary phase mask can work with the spherical aberration inevitably induced by thick sample inhomogeneities, to extend the DOF of a single-molecule fluorescence microscope over more than 4 μm. The effect of point-spread-function (PSF) engineering over spherical aberration regularizes inhomogeneities of the PSF along the optical axis by restricting it to a narrow distribution. This allows the use of a single fitting function (i.e. Gaussian function) to localize single emitters over the whole extended DOF. Application of this simple approach on diffusing nanoparticles demonstrate that SPT trajectories can be recorded on significantly longer times.

physics.optics

Photoswitchable Single-Walled Carbon Nanotubes for Super-Resolution Microscopy in the Near-Infrared

The design of single-molecule photoswitchable emitters was the first milestone toward the advent of single-molecule localization microscopy that sets a new paradigm in the field of optical imaging. Several photoswitchable emitters have been developed but they all fluoresce in the visible or far-red ranges, missing the desirable near-infrared window where biological tissues are most transparent. Moreover, photocontrol of individual emitters in the near-infrared would be highly desirable for elementary optical molecular switches or information storage elements since most communication data transfer protocols are established in this spectral range. Here we introduce a novel type of hybrid nanomaterials consisting of single-wall carbon nanotubes covalently functionalized with photo-switching molecules that are used to control the intrinsic luminescence of the single nanotubes in the near-infrared (beyond 1 $μ$m). We provide proof-of-concept of localization microscopy based on these bright photoswitchable near-infrared emitters.

physics.bio-ph

Generation of photoluminescent ultrashort carbon nanotubes through nanoscale exciton localization at sp3 -defect sites

The intrinsic near-infrared photoluminescence observed in long single walled carbon nanotubes is systematically quenched in ultrashort single-walled carbon nanotubes (usCNTs, below 100 nm length) due to their short dimension as compared to the exciton diffusion length. It would however be key for number of applications to have such tiny nanostructure displaying photoluminescence emission to complement their unique physical, chemical and biological properties. Here we demonstrate that intense photoluminescence can be created in usCNTs (~40 nm length) upon incorporation of emissive sp3-defect sites in order to trap excitons. Using super-resolution imaging at <25 nm resolution, we directly reveal the localization of excitons at the defect sites on individual usCNTs. They are found preferentially localized at nanotube ends which can be separated by less than 40 nm and behave as independent emitters. The demonstration and control of bright near-infrared photoluminescence in usCNTs through exciton trapping opens the possibility to engineering tiny carbon nanotubes for applications in various domains of research including quantum optics and bioimaging.

physics.app-ph

The 2015 super-resolution microscopy roadmap

Far-field optical microscopy using focused light is an important tool in a number of scientific disciplines including chemical, (bio)physical and biomedical research, particularly with respect to the study of living cells and organisms. Unfortunately, the applicability of the optical microscope is limited, since the diffraction of light imposes limitations on the spatial resolution of the image. Consequently the details of, for example, cellular protein distributions, can be visualized only to a certain extent. Fortunately, recent years have witnessed the development of 'super-resolution' far-field optical microscopy (nanoscopy) techniques such as stimulated emission depletion (STED), ground state depletion (GSD), reversible saturated optical (fluorescence) transitions (RESOLFT), photoactivation localization microscopy (PALM), stochastic optical reconstruction microscopy (STORM), structured illumination microscopy (SIM) or saturated structured illumination microscopy (SSIM), all in one way or another addressing the problem of the limited spatial resolution of far-field optical microscopy. While SIM achieves a two-fold improvement in spatial resolution compared to conventional optical microscopy, STED, RESOLFT, PALM/STORM, or SSIM have all gone beyond, pushing the limits of optical image resolution to the nanometer scale. Consequently, all super-resolution techniques open new avenues of biomedical research. Because the field is so young, the potential capabilities of different super-resolution microscopy approaches have yet to be fully explored, and uncertainties remain when considering the best choice of methodology. Thus, even for experts, the road to the future is sometimes shrouded in mist. The super-resolution optical microscopy roadmap of Journal of Physics D: Applied Physics addresses this need for clarity. It provides guidance to the outstanding questions through a collection of short review articles from experts in the field, giving a thorough discussion on the concepts underlying super-resolution optical microscopy, the potential of different approaches, the importance of label optimization (such as reversible photoswitchable proteins) and applications in which these methods will have a significant impact.

physics.bio-ph

Small Gold Nanorods with Tunable Absorption for Photothermal Microscopy in Cells

Over the last decade, single-molecule optical microscopy has become the gold-standard approach to decipher complex molecular processes in cellular environments. [1-3] Single-molecule fluorescence microscopy has several advantages such as ease of application, high sensitivity, low invasiveness and versatility due the large number of available fluorescent probes. It bears however some drawbacks related to the poor photostability of organic dye molecules [4] and auto-fluorescent proteins [5-7] and and to the relatively large size of semiconductor nanoparticles in the context of live cell applications. [4,8,9] The overall size of the functional biomarkers is a general issue for any imaging approach because of steric hindrance effects in confined cell regions. Small red-shifted nano-emitters that are highly photostable are not currently available, while they would combine the best physical and optical penetration properties in biological tissues. Although single-molecule absorption microscopy was early used to detect single-molecules [10] at cryogenic temperatures, it is only with the advent of photothermal microscopy [11,12] that practical applications of absorption microscopy were developed in single-molecule research. Photothermal imaging (PhI)

physics.bio-ph

Identification and super-resolution imaging of ligand-activated receptor dimers in live cells

Molecular interactions are key to many chemical and biological processes like protein function. In many signaling processes they occur in sub-cellular areas displaying nanoscale organizations and involving molecular assemblies. The nanometric dimensions and the dynamic nature of the interactions make their investigations complex in live cells. While super-resolution fluorescence microscopies offer live-cell molecular imaging with sub-wavelength resolutions, they lack specificity for distinguishing interacting molecule populations. Here we combine super-resolution microscopy and single-molecule Förster Resonance Energy Transfer (FRET) to identify dimers of receptors induced by ligand binding and provide super-resolved images of their membrane distribution in live cells. By developing a two-color universal-Point-Accumulation-In-the-Nanoscale-Topography (uPAINT) method, dimers of epidermal growth factor receptors (EGFR) activated by EGF are studied at ultra-high densities, revealing preferential cell-edge sub-localization. This methodology which is specifically devoted to the study of molecules in interaction, may find other applications in biological systems where understanding of molecular organization is crucial.

physics.bio-ph

Metrological Investigation of the (6,5) Carbon Nanotube Absorption Cross Section

Using single-nanotube absorption microscopy, we measured the absorption cross section of (6,5) carbon nanotubes at their second-order optical transition. We obtained a value of 3.2 10-17 cm2/C atom with a precision of 15% and an accuracy below 20%. This constitutes the first metrological investigation of the absorption cross section of chirality-identified nanotubes. Correlative absorption-luminescence microscopies performed on long nanotubes reveal a direct manifestation of exciton diffusion in the nanotube.

cond-mat.mes-hall

Mechanism of Electrolyte-Induced Brightening in Single-Wall Carbon Nanotubes

While addition of electrolyte to sodium dodecyl sulfate suspensions of single-wall carbon nanotubes has been demonstrated to result in significant brightening of the nanotube photoluminescence (PL), the brightening mechanism has remained unresolved. Here, we probe this mechanism using time-resolved PL decay measurements. We find that PL decay times increase by a factor of 2 on addition of CsCl as the electrolyte. Such an increase directly parallels an observed near-doubling of PL intensity, indicating the brightening results primarily from changes in nonradiative decay rates associated with exciton diffusion to quenching sites. Our findings indicate that a reduced number of these sites results from electrolyte-induced reorientation of the surfactant surface structure that partially removes pockets of water from the tube surface where excitons can dissociate, and thus underscores the contribution of interfacial water in exciton recombination processes.

cond-mat.mtrl-sci

A highly specific gold nanoprobe for live-cell single-molecule imaging

Single molecule tracking in live cells is the ultimate tool to study subcellular protein dynamics, but it is often limited by the probe size and photostability. Due to these issues, long-term tracking of proteins in confined and crowded environments, such as intracellular spaces, remains challenging. We have developed a novel optical probe consisting of 5-nm gold nanoparticles functionalized with a small fragment of camelid antibodies that recognize widely used GFPs with a very high affinity, which we call GFP-nanobodies. These small gold nanoparticles can be detected and tracked using photothermal imaging for arbitrarily long periods of time. Surface and intracellular GFP-proteins were effectively labeled even in very crowded environments such as adhesion sites and cytoskeletal structures both in vitro and in live cell cultures. These nanobody-coated gold nanoparticles are probes with unparalleled capabilities; small size, perfect photostability, high specificity, and versatility afforded by combination with the vast existing library of GFP-tagged proteins.

physics.bio-ph

Biexciton, single carrier, and trion generation dynamics in single-walled carbon nanotubes

We present a study of free carrier photo-generation and multi-carrier bound states, such as biexcitons and trions (ionized excitons), in semiconducting single-walled carbon nanotubes. Pump-and-probe measurements performed with fs pulses reveal the effects of strong Coulomb interactions between carriers on their dynamics. Biexciton formation by optical transition from exciton population results in an induced absorption line (binding energy 130 meV). Exciton-exciton annihilation process is shown to evolve at high densities towards an Auger process that can expel carriers from nanotubes. The remaining carriers give rise to an induced absorption due to trion formation (binding energy 190 meV). These features show the dynamics of exciton and free carriers populations.

cond-mat.mes-hall

Nanoscale Thermotropic Phase Transitions Enhance Photothermal Microscopy Signals

The photothermal heterodyne imaging technique enabled studies of individual weakly absorbing nano-objects in various environments. It uses a photo-induced change in the refractive index of the environment. Taking advantage of the dramatic index of refraction change occurring around a thermotropic liquid crystalline phase transition, we demonstrate a 40-fold signal-to-noise ratio enhancement for gold nanoparticles imaged in 4-Cyano-4'-pentylbiphenyl (5CB) liquid crystals over those in a water environment. We studied the photothermal signal as a function of probe laser polarization, heating power, and sample temperature quantifying the optimal enhancement. This study established photothermal microscopy as a valuable technique for inducing and/or detecting local phase transitions at the nanometer scales.

physics.optics

Luminescence Properties of Individual Empty and Water-filled Single-Walled Carbon Nanotubes

The influence of water-filling on the photoluminescence (PL) properties of SWCNTs is studied by ensemble and single-molecule PL spectroscopy. Red-shifted PL and PL excitation spectra are observed upon water filling for 16 chiralities and can be used to unambiguously distinguish empty SWCNTs from filled ones. The effect of water-filling on the optical transitions is well reproduced by a continuum dielectric constant model previously developed to describe the influence of the nanotube outer environment. Empty nanotubes display narrower luminescence lines and lower inhomogeneous broadening, signatures of reduced extrinsic perturbations. The radial breathing mode (RBM) phonon side band is clearly observed in the PL spectrum of small diameter empty tubes and a strong exciton-phonon coupling is measured for this vibration. Biexponential PL decays are observed for empty and water filled tubes, and only the short living component is influenced by the water-filling. This may be attributed to a shortening of the radiative lifetime of the bright state by the inner dielectric environment.

cond-mat.mes-hall

Quantum yield optimized fluorophores for site-specific labeling and super-resolution imaging

Single molecule applications, saturated pattern excitation microscopy, or stimulated emission depletion (STED) microscopy demand for bright and highly stable fluorescent dyes1,2. Despite of intensive research the choice of fluorphores is still very limited. Typically a stable fluorescent dyes is covalently attached to the target. This methodology brings forward a number of limitations, in particular, in case of protein labeling. First of all the fluorescent probes need to be attached selectively and site-specifically to prevent unspecific background. This often requires single cysteine mutations for covalent protein modification. Employing quantum dots allows overcoming problems of photo-bleaching3-6. However, the downsides are their large size, rendering the probe inaccessible to spatially confined architectures, issues in biocompatibility due to proper particle coating, and cellular toxicity6-8. Here we propose a new method to overcome the above outlined problems.

cond-mat.mes-hall

A New Route to Fluorescent SWNT/Silica Nanocomposites: Balancing Fluorescence Intensity and Environmental Sensitivity

We investigate the relationship between photoluminescence (PL) intensity and environmental sensitivity of surfactant-wrapped single walled carbon nanotubes (SWNTs). SWNTs were studied under a variety of conditions in suspension as well as encapsulated in silica nanocomposites, which were prepared by an efficient chemical vapor into liquids (CViL) sol-gel process. The dramatically improved silica encapsulation process described here has several advantages, including fast preparation and high SWNT loading concentration, over other encapsulation methods used to prepare fluorescent SWNT/silica nanocomposites. Further, addition of glycerol to SWNT suspensions prior to performing the CViL sol-gel process allows for the preparation of freestanding fluorescent silica xerogels, which to the best of our knowledge is the first report of such nanocomposites. Our spectroscopic data on SWNTs suspended in aqueous surfactants or encapsulated in silica show that achieving maximum PL intensity results in decreased sensitivity of SWNT emission response to changes imparted by the local environment. In addition, silica encapsulation can be used to "lock-in" a surfactant micelle structure surrounding SWNTs to minimize interactions between SWNTs and ions/small molecules. Ultimately, our work demonstrates that one should consider a balance between maximum PL intensity and the ability to sense environmental changes when designing new SWNT systems for future sensing applications.

cond-mat.mes-hall