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Laurent Gautier

Publications and source records attributed to Laurent Gautier.

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Energy Constrained Hierarchical Underwater Monitoring via Local Multi-Agent RAG

Marine life monitoring is limited by strict energy constraints, poor underwater connectivity, and the high cost of transmitting raw multimodal data from remote deployments. This paper proposes a low-consumption underwater monitoring architecture that combines always-on edge sensing with selective high-performance local reasoning. The system follows a hierarchical master--satellite design in which ultra-low-power MAX78000/MAX78002 microcontrollers continuously monitor visual and acoustic signals, while an NVIDIA Jetson Orin NX is activated only for scheduled processing, event-driven analysis, or researcher interaction. Once active, the Jetson executes a fully local multimodal pipeline for data ingestion, visual target extraction, embedding-based indexing, species identification, retrieval-augmented reasoning, and automated reporting. BioCLIP/OpenCLIP embeddings are used to organize mission data, marine taxonomic references, scientific documents, and operational metadata in local ChromaDB collections. A dedicated identification layer combines visual similarity search, centroid-based classification, and supervised classifiers to support adaptive species recognition. A LangChain-based multi-agent framework coordinates query routing, structured analysis, energy management, hardware reconfiguration, and report generation. The architecture is evaluated through visual and acoustic monitoring case studies. The proposed system bridges ultra-low-power continuous sensing with local multimodal intelligence, enabling underwater stations to produce structured, researcher-ready knowledge while compressing local data for flexible acoustic, optical, or satellite transmission, minimizing both energy use and communication overhead.

cs.IR

Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads

Cheap high-throughput DNA sequencing may soon become routine not only for human genomes but also for practically anything requiring the identification of living organisms from their DNA: tracking of infectious agents, control of food products, bioreactors, or environmental samples. We propose a novel general approach to the analysis of sequencing data in which the reference genome does not have to be specified. Using a distributed architecture we are able to query a remote server for hints about what the reference might be, transferring a relatively small amount of data, and the hints can be used for more computationally-demanding work. Our system consists of a server with known reference DNA indexed, and a client with raw sequencing reads. The client sends a sample of unidentified reads, and in return receives a list of matching references known to the server. Sequences for the references can be retrieved and used for exhaustive computation on the reads, such as alignment. To demonstrate this approach we have implemented a web server, indexing tens of thousands of publicly available genomes and genomic regions from various organisms and returning lists of matching hits from query sequencing reads. We have also implemented two clients, one of them running in a web browser, in order to demonstrate that gigabytes of raw sequencing reads of unknown origin could be identified without the need to transfer a very large volume of data, and on modestly powered computing devices. A web access is available at http://tapir.cbs.dtu.dk. The source code for a python command-line client, a server, and supplementary data is available at http://bit.ly/1aURxkc.

q-bio.GN