arXiv subjects

Lawrence Carin

Publications and source records attributed to Lawrence Carin.

At least 127 records · Page 7Linked to original sources

arXiv2019

Thyroid Cancer Malignancy Prediction From Whole Slide Cytopathology Images

We consider preoperative prediction of thyroid cancer based on ultra-high-resolution whole-slide cytopathology images. Inspired by how human experts perform diagnosis, our approach first identifies and classifies diagnostic image regions containing informative thyroid cells, which only comprise a tiny fraction of the entire image. These local estimates are then aggregated into a single prediction of thyroid malignancy. Several unique characteristics of thyroid cytopathology guide our deep-learning-based approach. While our method is closely related to multiple-instance learning, it deviates from these methods by using a supervised procedure to extract diagnostically relevant regions. Moreover, we propose to simultaneously predict thyroid malignancy, as well as a diagnostic score assigned by a human expert, which further allows us to devise an improved training strategy. Experimental results show that the proposed algorithm achieves performance comparable to human experts, and demonstrate the potential of using the algorithm for screening and as an assistive tool for the improved diagnosis of indeterminate cases.

cs.CV↗

arXiv2019

Topic-Guided Variational Autoencoders for Text Generation

We propose a topic-guided variational autoencoder (TGVAE) model for text generation. Distinct from existing variational autoencoder (VAE) based approaches, which assume a simple Gaussian prior for the latent code, our model specifies the prior as a Gaussian mixture model (GMM) parametrized by a neural topic module. Each mixture component corresponds to a latent topic, which provides guidance to generate sentences under the topic. The neural topic module and the VAE-based neural sequence module in our model are learned jointly. In particular, a sequence of invertible Householder transformations is applied to endow the approximate posterior of the latent code with high flexibility during model inference. Experimental results show that our TGVAE outperforms alternative approaches on both unconditional and conditional text generation, which can generate semantically-meaningful sentences with various topics.

cs.CL↗

arXiv2019

Scalable Thompson Sampling via Optimal Transport

Thompson sampling (TS) is a class of algorithms for sequential decision-making, which requires maintaining a posterior distribution over a model. However, calculating exact posterior distributions is intractable for all but the simplest models. Consequently, efficient computation of an approximate posterior distribution is a crucial problem for scalable TS with complex models, such as neural networks. In this paper, we use distribution optimization techniques to approximate the posterior distribution, solved via Wasserstein gradient flows. Based on the framework, a principled particle-optimization algorithm is developed for TS to approximate the posterior efficiently. Our approach is scalable and does not make explicit distribution assumptions on posterior approximations. Extensive experiments on both synthetic data and real large-scale data demonstrate the superior performance of the proposed methods.

stat.ML↗

arXiv2019

Improving Sequence-to-Sequence Learning via Optimal Transport

Sequence-to-sequence models are commonly trained via maximum likelihood estimation (MLE). However, standard MLE training considers a word-level objective, predicting the next word given the previous ground-truth partial sentence. This procedure focuses on modeling local syntactic patterns, and may fail to capture long-range semantic structure. We present a novel solution to alleviate these issues. Our approach imposes global sequence-level guidance via new supervision based on optimal transport, enabling the overall characterization and preservation of semantic features. We further show that this method can be understood as a Wasserstein gradient flow trying to match our model to the ground truth sequence distribution. Extensive experiments are conducted to validate the utility of the proposed approach, showing consistent improvements over a wide variety of NLP tasks, including machine translation, abstractive text summarization, and image captioning.

cs.CL↗

arXiv2019

GO Gradient for Expectation-Based Objectives

Within many machine learning algorithms, a fundamental problem concerns efficient calculation of an unbiased gradient wrt parameters $\gammav$ for expectation-based objectives $\Ebb_{q_{\gammav} (\yv)} [f(\yv)]$. Most existing methods either (i) suffer from high variance, seeking help from (often) complicated variance-reduction techniques; or (ii) they only apply to reparameterizable continuous random variables and employ a reparameterization trick. To address these limitations, we propose a General and One-sample (GO) gradient that (i) applies to many distributions associated with non-reparameterizable continuous or discrete random variables, and (ii) has the same low-variance as the reparameterization trick. We find that the GO gradient often works well in practice based on only one Monte Carlo sample (although one can of course use more samples if desired). Alongside the GO gradient, we develop a means of propagating the chain rule through distributions, yielding statistical back-propagation, coupling neural networks to common random variables.

stat.ML↗

arXiv2019

Diffusion Maps for Textual Network Embedding

Textual network embedding leverages rich text information associated with the network to learn low-dimensional vectorial representations of vertices. Rather than using typical natural language processing (NLP) approaches, recent research exploits the relationship of texts on the same edge to graphically embed text. However, these models neglect to measure the complete level of connectivity between any two texts in the graph. We present diffusion maps for textual network embedding (DMTE), integrating global structural information of the graph to capture the semantic relatedness between texts, with a diffusion-convolution operation applied on the text inputs. In addition, a new objective function is designed to efficiently preserve the high-order proximity using the graph diffusion. Experimental results show that the proposed approach outperforms state-of-the-art methods on the vertex-classification and link-prediction tasks.

cs.CL↗

arXiv2019

Adversarial Learning of a Sampler Based on an Unnormalized Distribution

We investigate adversarial learning in the case when only an unnormalized form of the density can be accessed, rather than samples. With insights so garnered, adversarial learning is extended to the case for which one has access to an unnormalized form u(x) of the target density function, but no samples. Further, new concepts in GAN regularization are developed, based on learning from samples or from u(x). The proposed method is compared to alternative approaches, with encouraging results demonstrated across a range of applications, including deep soft Q-learning.

cs.LG↗

arXiv2018

Generative Adversarial Network Training is a Continual Learning Problem

Generative Adversarial Networks (GANs) have proven to be a powerful framework for learning to draw samples from complex distributions. However, GANs are also notoriously difficult to train, with mode collapse and oscillations a common problem. We hypothesize that this is at least in part due to the evolution of the generator distribution and the catastrophic forgetting tendency of neural networks, which leads to the discriminator losing the ability to remember synthesized samples from previous instantiations of the generator. Recognizing this, our contributions are twofold. First, we show that GAN training makes for a more interesting and realistic benchmark for continual learning methods evaluation than some of the more canonical datasets. Second, we propose leveraging continual learning techniques to augment the discriminator, preserving its ability to recognize previous generator samples. We show that the resulting methods add only a light amount of computation, involve minimal changes to the model, and result in better overall performance on the examined image and text generation tasks.

stat.ML↗

arXiv2018

Sequence Generation with Guider Network

Sequence generation with reinforcement learning (RL) has received significant attention recently. However, a challenge with such methods is the sparse-reward problem in the RL training process, in which a scalar guiding signal is often only available after an entire sequence has been generated. This type of sparse reward tends to ignore the global structural information of a sequence, causing generation of sequences that are semantically inconsistent. In this paper, we present a model-based RL approach to overcome this issue. Specifically, we propose a novel guider network to model the sequence-generation environment, which can assist next-word prediction and provide intermediate rewards for generator optimization. Extensive experiments show that the proposed method leads to improved performance for both unconditional and conditional sequence-generation tasks.

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arXiv2018

Distilled Wasserstein Learning for Word Embedding and Topic Modeling

We propose a novel Wasserstein method with a distillation mechanism, yielding joint learning of word embeddings and topics. The proposed method is based on the fact that the Euclidean distance between word embeddings may be employed as the underlying distance in the Wasserstein topic model. The word distributions of topics, their optimal transports to the word distributions of documents, and the embeddings of words are learned in a unified framework. When learning the topic model, we leverage a distilled underlying distance matrix to update the topic distributions and smoothly calculate the corresponding optimal transports. Such a strategy provides the updating of word embeddings with robust guidance, improving the algorithmic convergence. As an application, we focus on patient admission records, in which the proposed method embeds the codes of diseases and procedures and learns the topics of admissions, obtaining superior performance on clinically-meaningful disease network construction, mortality prediction as a function of admission codes, and procedure recommendation.

cs.LG↗

arXiv2018

Predicting Smoking Events with a Time-Varying Semi-Parametric Hawkes Process Model

Health risks from cigarette smoking -- the leading cause of preventable death in the United States -- can be substantially reduced by quitting. Although most smokers are motivated to quit, the majority of quit attempts fail. A number of studies have explored the role of self-reported symptoms, physiologic measurements, and environmental context on smoking risk, but less work has focused on the temporal dynamics of smoking events, including daily patterns and related nicotine effects. In this work, we examine these dynamics and improve risk prediction by modeling smoking as a self-triggering process, in which previous smoking events modify current risk. Specifically, we fit smoking events self-reported by 42 smokers to a time-varying semi-parametric Hawkes process (TV-SPHP) developed for this purpose. Results show that the TV-SPHP achieves superior prediction performance compared to related and existing models, with the incorporation of time-varying predictors having greatest benefit over longer prediction windows. Moreover, the impact function illustrates previously unknown temporal dynamics of smoking, with possible connections to nicotine metabolism to be explored in future work through a randomized study design. By more effectively predicting smoking events and exploring a self-triggering component of smoking risk, this work supports development of novel or improved cessation interventions that aim to reduce death from smoking.

stat.ML↗

arXiv2018

Learning Context-Sensitive Convolutional Filters for Text Processing

Convolutional neural networks (CNNs) have recently emerged as a popular building block for natural language processing (NLP). Despite their success, most existing CNN models employed in NLP share the same learned (and static) set of filters for all input sentences. In this paper, we consider an approach of using a small meta network to learn context-sensitive convolutional filters for text processing. The role of meta network is to abstract the contextual information of a sentence or document into a set of input-aware filters. We further generalize this framework to model sentence pairs, where a bidirectional filter generation mechanism is introduced to encapsulate co-dependent sentence representations. In our benchmarks on four different tasks, including ontology classification, sentiment analysis, answer sentence selection, and paraphrase identification, our proposed model, a modified CNN with context-sensitive filters, consistently outperforms the standard CNN and attention-based CNN baselines. By visualizing the learned context-sensitive filters, we further validate and rationalize the effectiveness of proposed framework.

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arXiv2018

Improved Semantic-Aware Network Embedding with Fine-Grained Word Alignment

Network embeddings, which learn low-dimensional representations for each vertex in a large-scale network, have received considerable attention in recent years. For a wide range of applications, vertices in a network are typically accompanied by rich textual information such as user profiles, paper abstracts, etc. We propose to incorporate semantic features into network embeddings by matching important words between text sequences for all pairs of vertices. We introduce a word-by-word alignment framework that measures the compatibility of embeddings between word pairs, and then adaptively accumulates these alignment features with a simple yet effective aggregation function. In experiments, we evaluate the proposed framework on three real-world benchmarks for downstream tasks, including link prediction and multi-label vertex classification. Results demonstrate that our model outperforms state-of-the-art network embedding methods by a large margin.

cs.CL↗

arXiv2018

Policy Optimization as Wasserstein Gradient Flows

Policy optimization is a core component of reinforcement learning (RL), and most existing RL methods directly optimize parameters of a policy based on maximizing the expected total reward, or its surrogate. Though often achieving encouraging empirical success, its underlying mathematical principle on {\em policy-distribution} optimization is unclear. We place policy optimization into the space of probability measures, and interpret it as Wasserstein gradient flows. On the probability-measure space, under specified circumstances, policy optimization becomes a convex problem in terms of distribution optimization. To make optimization feasible, we develop efficient algorithms by numerically solving the corresponding discrete gradient flows. Our technique is applicable to several RL settings, and is related to many state-of-the-art policy-optimization algorithms. Empirical results verify the effectiveness of our framework, often obtaining better performance compared to related algorithms.

cs.LG↗

arXiv2018

Multi-Label Learning from Medical Plain Text with Convolutional Residual Models

Predicting diagnoses from Electronic Health Records (EHRs) is an important medical application of multi-label learning. We propose a convolutional residual model for multi-label classification from doctor notes in EHR data. A given patient may have multiple diagnoses, and therefore multi-label learning is required. We employ a Convolutional Neural Network (CNN) to encode plain text into a fixed-length sentence embedding vector. Since diagnoses are typically correlated, a deep residual network is employed on top of the CNN encoder, to capture label (diagnosis) dependencies and incorporate information directly from the encoded sentence vector. A real EHR dataset is considered, and we compare the proposed model with several well-known baselines, to predict diagnoses based on doctor notes. Experimental results demonstrate the superiority of the proposed convolutional residual model.

stat.ML↗

arXiv2018

Continuous-Time Flows for Efficient Inference and Density Estimation

Two fundamental problems in unsupervised learning are efficient inference for latent-variable models and robust density estimation based on large amounts of unlabeled data. Algorithms for the two tasks, such as normalizing flows and generative adversarial networks (GANs), are often developed independently. In this paper, we propose the concept of {\em continuous-time flows} (CTFs), a family of diffusion-based methods that are able to asymptotically approach a target distribution. Distinct from normalizing flows and GANs, CTFs can be adopted to achieve the above two goals in one framework, with theoretical guarantees. Our framework includes distilling knowledge from a CTF for efficient inference, and learning an explicit energy-based distribution with CTFs for density estimation. Both tasks rely on a new technique for distribution matching within amortized learning. Experiments on various tasks demonstrate promising performance of the proposed CTF framework, compared to related techniques.

stat.ML↗

arXiv2018

JointGAN: Multi-Domain Joint Distribution Learning with Generative Adversarial Nets

A new generative adversarial network is developed for joint distribution matching. Distinct from most existing approaches, that only learn conditional distributions, the proposed model aims to learn a joint distribution of multiple random variables (domains). This is achieved by learning to sample from conditional distributions between the domains, while simultaneously learning to sample from the marginals of each individual domain. The proposed framework consists of multiple generators and a single softmax-based critic, all jointly trained via adversarial learning. From a simple noise source, the proposed framework allows synthesis of draws from the marginals, conditional draws given observations from a subset of random variables, or complete draws from the full joint distribution. Most examples considered are for joint analysis of two domains, with examples for three domains also presented.

cs.LG↗

arXiv2018

Adversarial Time-to-Event Modeling

Modern health data science applications leverage abundant molecular and electronic health data, providing opportunities for machine learning to build statistical models to support clinical practice. Time-to-event analysis, also called survival analysis, stands as one of the most representative examples of such statistical models. We present a deep-network-based approach that leverages adversarial learning to address a key challenge in modern time-to-event modeling: nonparametric estimation of event-time distributions. We also introduce a principled cost function to exploit information from censored events (events that occur subsequent to the observation window). Unlike most time-to-event models, we focus on the estimation of time-to-event distributions, rather than time ordering. We validate our model on both benchmark and real datasets, demonstrating that the proposed formulation yields significant performance gains relative to a parametric alternative, which we also propose.

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