arXiv subjects

Lei Deng

Publications and source records attributed to Lei Deng.

At least 55 records · Page 3Linked to original sources

arXiv2022

Reinforcement Learning for Improved Random Access in Delay-Constrained Heterogeneous Wireless Networks

In this paper, we for the first time investigate the random access problem for a delay-constrained heterogeneous wireless network. We begin with a simple two-device problem where two devices deliver delay-constrained traffic to an access point (AP) via a common unreliable collision channel. By assuming that one device (called Device 1) adopts ALOHA, we aim to optimize the random access scheme of the other device (called Device 2). The most intriguing part of this problem is that Device 2 does not know the information of Device 1 but needs to maximize the system timely throughput. We first propose a Markov Decision Process (MDP) formulation to derive a model-based upper bound so as to quantify the performance gap of certain random access schemes. We then utilize reinforcement learning (RL) to design an R-learning-based random access scheme, called tiny state-space R-learning random access (TSRA), which is subsequently extended for the tackling of the general multi-device problem. We carry out extensive simulations to show that the proposed TSRA simultaneously achieves higher timely throughput, lower computation complexity, and lower power consumption than the existing baseline--deep-reinforcement learning multiple access (DLMA). This indicates that our proposed TSRA scheme is a promising means for efficient random access over massive mobile devices with limited computation and battery capabilities.

cs.NI↗

arXiv2022

Attention-wise masked graph contrastive learning for predicting molecular property

Accurate and efficient prediction of the molecular properties of drugs is one of the fundamental problems in drug research and development. Recent advancements in representation learning have been shown to greatly improve the performance of molecular property prediction. However, due to limited labeled data, supervised learning-based molecular representation algorithms can only search limited chemical space, which results in poor generalizability. In this work, we proposed a self-supervised representation learning framework for large-scale unlabeled molecules. We developed a novel molecular graph augmentation strategy, referred to as attention-wise graph mask, to generate challenging positive sample for contrastive learning. We adopted the graph attention network (GAT) as the molecular graph encoder, and leveraged the learned attention scores as masking guidance to generate molecular augmentation graphs. By minimization of the contrastive loss between original graph and masked graph, our model can capture important molecular structure and higher-order semantic information. Extensive experiments showed that our attention-wise graph mask contrastive learning exhibit state-of-the-art performance in a couple of downstream molecular property prediction tasks.

q-bio.BM↗

arXiv2022

Contrastive learning-based computational histopathology predict differential expression of cancer driver genes

Digital pathological analysis is run as the main examination used for cancer diagnosis. Recently, deep learning-driven feature extraction from pathology images is able to detect genetic variations and tumor environment, but few studies focus on differential gene expression in tumor cells. In this paper, we propose a self-supervised contrastive learning framework, HistCode, to infer differential gene expressions from whole slide images (WSIs). We leveraged contrastive learning on large-scale unannotated WSIs to derive slide-level histopathological feature in latent space, and then transfer it to tumor diagnosis and prediction of differentially expressed cancer driver genes. Our extensive experiments showed that our method outperformed other state-of-the-art models in tumor diagnosis tasks, and also effectively predicted differential gene expressions. Interestingly, we found the higher fold-changed genes can be more precisely predicted. To intuitively illustrate the ability to extract informative features from pathological images, we spatially visualized the WSIs colored by the attentive scores of image tiles. We found that the tumor and necrosis areas were highly consistent with the annotations of experienced pathologists. Moreover, the spatial heatmap generated by lymphocyte-specific gene expression patterns was also consistent with the manually labeled WSI.

cs.CV↗

arXiv2022

Survey on Graph Neural Network Acceleration: An Algorithmic Perspective

Graph neural networks (GNNs) have been a hot spot of recent research and are widely utilized in diverse applications. However, with the use of huger data and deeper models, an urgent demand is unsurprisingly made to accelerate GNNs for more efficient execution. In this paper, we provide a comprehensive survey on acceleration methods for GNNs from an algorithmic perspective. We first present a new taxonomy to classify existing acceleration methods into five categories. Based on the classification, we systematically discuss these methods and highlight their correlations. Next, we provide comparisons from aspects of the efficiency and characteristics of these methods. Finally, we suggest some promising prospects for future research.

cs.LG↗

arXiv2022

Toward Robust Spiking Neural Network Against Adversarial Perturbation

As spiking neural networks (SNNs) are deployed increasingly in real-world efficiency critical applications, the security concerns in SNNs attract more attention. Currently, researchers have already demonstrated an SNN can be attacked with adversarial examples. How to build a robust SNN becomes an urgent issue. Recently, many studies apply certified training in artificial neural networks (ANNs), which can improve the robustness of an NN model promisely. However, existing certifications cannot transfer to SNNs directly because of the distinct neuron behavior and input formats for SNNs. In this work, we first design S-IBP and S-CROWN that tackle the non-linear functions in SNNs' neuron modeling. Then, we formalize the boundaries for both digital and spike inputs. Finally, we demonstrate the efficiency of our proposed robust training method in different datasets and model architectures. Based on our experiment, we can achieve a maximum $37.7\%$ attack error reduction with $3.7\%$ original accuracy loss. To the best of our knowledge, this is the first analysis on robust training of SNNs.

cs.NE↗

arXiv2022

Spiking Neural Network Integrated Circuits: A Review of Trends and Future Directions

In this paper, we reviewed Spiking neural network (SNN) integrated circuit designs and analyzed the trends among mixed-signal cores, fully digital cores and large-scale, multi-core designs. Recently reported SNN integrated circuits are compared under three broad categories: (a) Large-scale multi-core designs that have dedicated NOC for spike routing, (b) digital single-core designs and (c) mixed-signal single-core designs. Finally, we finish the paper with some directions for future progress.

cs.NE↗

arXiv2022

A Deep Learning Approach to Predicting Ventilator Parameters for Mechanically Ventilated Septic Patients

We develop a deep learning approach to predicting a set of ventilator parameters for a mechanically ventilated septic patient using a long and short term memory (LSTM) recurrent neural network (RNN) model. We focus on short-term predictions of a set of ventilator parameters for the septic patient in emergency intensive care unit (EICU). The short-term predictability of the model provides attending physicians with early warnings to make timely adjustment to the treatment of the patient in the EICU. The patient specific deep learning model can be trained on any given critically ill patient, making it an intelligent aide for physicians to use in emergent medical situations.

q-bio.QM↗

arXiv2022

Advancing Deep Residual Learning by Solving the Crux of Degradation in Spiking Neural Networks

Despite the rapid progress of neuromorphic computing, the inadequate depth and the resulting insufficient representation power of spiking neural networks (SNNs) severely restrict their application scope in practice. Residual learning and shortcuts have been evidenced as an important approach for training deep neural networks, but rarely did previous work assess their applicability to the characteristics of spike-based communication and spatiotemporal dynamics. This negligence leads to impeded information flow and the accompanying degradation problem. In this paper, we identify the crux and then propose a novel residual block for SNNs, which is able to significantly extend the depth of directly trained SNNs, e.g., up to 482 layers on CIFAR-10 and 104 layers on ImageNet, without observing any slight degradation problem. We validate the effectiveness of our methods on both frame-based and neuromorphic datasets, and our SRM-ResNet104 achieves a superior result of 76.02% accuracy on ImageNet, the first time in the domain of directly trained SNNs. The great energy efficiency is estimated and the resulting networks need on average only one spike per neuron for classifying an input sample. We believe our powerful and scalable modeling will provide a strong support for further exploration of SNNs.

cs.NE↗

arXiv2021

ES-ImageNet: A Million Event-Stream Classification Dataset for Spiking Neural Networks

With event-driven algorithms, especially the spiking neural networks (SNNs), achieving continuous improvement in neuromorphic vision processing, a more challenging event-stream-dataset is urgently needed. However, it is well known that creating an ES-dataset is a time-consuming and costly task with neuromorphic cameras like dynamic vision sensors (DVS). In this work, we propose a fast and effective algorithm termed Omnidirectional Discrete Gradient (ODG) to convert the popular computer vision dataset ILSVRC2012 into its event-stream (ES) version, generating about 1,300,000 frame-based images into ES-samples in 1000 categories. In this way, we propose an ES-dataset called ES-ImageNet, which is dozens of times larger than other neuromorphic classification datasets at present and completely generated by the software. The ODG algorithm implements an image motion to generate local value changes with discrete gradient information in different directions, providing a low-cost and high-speed way for converting frame-based images into event streams, along with Edge-Integral to reconstruct the high-quality images from event streams. Furthermore, we analyze the statistics of the ES-ImageNet in multiple ways, and a performance benchmark of the dataset is also provided using both famous deep neural network algorithms and spiking neural network algorithms. We believe that this work shall provide a new large-scale benchmark dataset for SNNs and neuromorphic vision.

cs.CV↗

arXiv2021

Kronecker CP Decomposition with Fast Multiplication for Compressing RNNs

Recurrent neural networks (RNNs) are powerful in the tasks oriented to sequential data, such as natural language processing and video recognition. However, since the modern RNNs, including long-short term memory (LSTM) and gated recurrent unit (GRU) networks, have complex topologies and expensive space/computation complexity, compressing them becomes a hot and promising topic in recent years. Among plenty of compression methods, tensor decomposition, e.g., tensor train (TT), block term (BT), tensor ring (TR) and hierarchical Tucker (HT), appears to be the most amazing approach since a very high compression ratio might be obtained. Nevertheless, none of these tensor decomposition formats can provide both the space and computation efficiency. In this paper, we consider to compress RNNs based on a novel Kronecker CANDECOMP/PARAFAC (KCP) decomposition, which is derived from Kronecker tensor (KT) decomposition, by proposing two fast algorithms of multiplication between the input and the tensor-decomposed weight. According to our experiments based on UCF11, Youtube Celebrities Face and UCF50 datasets, it can be verified that the proposed KCP-RNNs have comparable performance of accuracy with those in other tensor-decomposed formats, and even 278,219x compression ratio could be obtained by the low rank KCP. More importantly, KCP-RNNs are efficient in both space and computation complexity compared with other tensor-decomposed ones under similar ranks. Besides, we find KCP has the best potential for parallel computing to accelerate the calculations in neural networks.

cs.CV↗

arXiv2021

Sampling methods for efficient training of graph convolutional networks: A survey

Graph Convolutional Networks (GCNs) have received significant attention from various research fields due to the excellent performance in learning graph representations. Although GCN performs well compared with other methods, it still faces challenges. Training a GCN model for large-scale graphs in a conventional way requires high computation and storage costs. Therefore, motivated by an urgent need in terms of efficiency and scalability in training GCN, sampling methods have been proposed and achieved a significant effect. In this paper, we categorize sampling methods based on the sampling mechanisms and provide a comprehensive survey of sampling methods for efficient training of GCN. To highlight the characteristics and differences of sampling methods, we present a detailed comparison within each category and further give an overall comparative analysis for the sampling methods in all categories. Finally, we discuss some challenges and future research directions of the sampling methods.

cs.LG↗

arXiv2021

Graph2MDA: a multi-modal variational graph embedding model for predicting microbe-drug associations

Accumulated clinical studies show that microbes living in humans interact closely with human hosts, and get involved in modulating drug efficacy and drug toxicity. Microbes have become novel targets for the development of antibacterial agents. Therefore, screening of microbe-drug associations can benefit greatly drug research and development. With the increase of microbial genomic and pharmacological datasets, we are greatly motivated to develop an effective computational method to identify new microbe-drug associations. In this paper, we proposed a novel method, Graph2MDA, to predict microbe-drug associations by using variational graph autoencoder (VGAE). We constructed multi-modal attributed graphs based on multiple features of microbes and drugs, such as molecular structures, microbe genetic sequences, and function annotations. Taking as input the multi-modal attribute graphs, VGAE was trained to learn the informative and interpretable latent representations of each node and the whole graph, and then a deep neural network classifier was used to predict microbe-drug associations. The hyperparameter analysis and model ablation studies showed the sensitivity and robustness of our model. We evaluated our method on three independent datasets and the experimental results showed that our proposed method outperformed six existing state-of-the-art methods. We also explored the meaningness of the learned latent representations of drugs and found that the drugs show obvious clustering patterns that are significantly consistent with drug ATC classification. Moreover, we conducted case studies on two microbes and two drugs and found 75\%-95\% predicted associations have been reported in PubMed literature. Our extensive performance evaluations validated the effectiveness of our proposed method.\

q-bio.QM↗

arXiv2021

Dynamic Control for Random Access in Deadline-Constrained Broadcasting

This paper considers random access in deadline-constrained broadcasting with frame-synchronized traffic. To enhance the maximum achievable timely delivery ratio (TDR), we define a dynamic control scheme that allows each active node to determine the transmission probability with certainty based on the current delivery urgency and the knowledge of current contention intensity. For an idealized environment where the contention intensity is completely known, we develop an analytical framework based on the theory of Markov Decision Process (MDP), which leads to an optimal scheme by applying backward induction. For a realistic environment where the contention intensity is incompletely known, we develop a framework using Partially Observable Markov Decision Process (POMDP), which can in theory be solved. We show that for both environments, there exists an optimal scheme that is optimal over all types of policies. To overcome the infeasibility in obtaining an optimal or near-optimal scheme from the POMDP framework, we investigate the behaviors of the optimal scheme for two extreme cases in the MDP framework, and leverage intuition gained from these behaviors to propose a heuristic scheme for the realistic environment with TDR close to the maximum achievable TDR in the idealized environment. In addition, we propose an approximation on the knowledge of contention intensity to further simplify this heuristic scheme. Numerical results with respect to a wide range of configurations are provided to validate our study.

eess.SY↗

arXiv2021

H2Learn: High-Efficiency Learning Accelerator for High-Accuracy Spiking Neural Networks

Although spiking neural networks (SNNs) take benefits from the bio-plausible neural modeling, the low accuracy under the common local synaptic plasticity learning rules limits their application in many practical tasks. Recently, an emerging SNN supervised learning algorithm inspired by backpropagation through time (BPTT) from the domain of artificial neural networks (ANNs) has successfully boosted the accuracy of SNNs and helped improve the practicability of SNNs. However, current general-purpose processors suffer from low efficiency when performing BPTT for SNNs due to the ANN-tailored optimization. On the other hand, current neuromorphic chips cannot support BPTT because they mainly adopt local synaptic plasticity rules for simplified implementation. In this work, we propose H2Learn, a novel architecture that can achieve high efficiency for BPTT-based SNN learning which ensures high accuracy of SNNs. At the beginning, we characterized the behaviors of BPTT-based SNN learning. Benefited from the binary spike-based computation in the forward pass and the weight update, we first design lookup table (LUT) based processing elements in Forward Engine and Weight Update Engine to make accumulations implicit and to fuse the computations of multiple input points. Second, benefited from the rich sparsity in the backward pass, we design a dual-sparsity-aware Backward Engine which exploits both input and output sparsity. Finally, we apply a pipeline optimization between different engines to build an end-to-end solution for the BPTT-based SNN learning. Compared with the modern NVIDIA V100 GPU, H2Learn achieves 7.38x area saving, 5.74-10.20x speedup, and 5.25-7.12x energy saving on several benchmark datasets.

cs.NE↗

arXiv2021

Reinforcement Learning Random Access for Delay-Constrained Heterogeneous Wireless Networks: A Two-User Case

In this paper, we investigate the random access problem for a delay-constrained heterogeneous wireless network. As a first attempt to study this new problem, we consider a network with two users who deliver delay-constrained traffic to an access point (AP) via a common unreliable collision wireless channel. We assume that one user (called user 1) adopts ALOHA and we optimize the random access scheme of the other user (called user 2). The most intriguing part of this problem is that user 2 does not know the information of user 1 but needs to maximize the system timely throughput. Such a paradigm of collaboratively sharing spectrum is envisioned by DARPA to better dynamically match the supply and demand in the future [1], [2]. We first propose a Markov Decision Process (MDP) formulation to derive a modelbased upper bound, which can quantify the performance gap of any designed schemes. We then utilize reinforcement learning (RL) to design an R-learning-based [3]-[5] random access scheme, called TSRA. We finally carry out extensive simulations to show that TSRA achieves close-to-upper-bound performance and better performance than the existing baseline DLMA [6], which is our counterpart scheme for delay-unconstrained heterogeneous wireless network. All source code is publicly available in https://github.com/DanzhouWu/TSRA.

cs.NI↗

arXiv2021

Exploiting Spiking Dynamics with Spatial-temporal Feature Normalization in Graph Learning

Biological spiking neurons with intrinsic dynamics underlie the powerful representation and learning capabilities of the brain for processing multimodal information in complex environments. Despite recent tremendous progress in spiking neural networks (SNNs) for handling Euclidean-space tasks, it still remains challenging to exploit SNNs in processing non-Euclidean-space data represented by graph data, mainly due to the lack of effective modeling framework and useful training techniques. Here we present a general spike-based modeling framework that enables the direct training of SNNs for graph learning. Through spatial-temporal unfolding for spiking data flows of node features, we incorporate graph convolution filters into spiking dynamics and formalize a synergistic learning paradigm. Considering the unique features of spike representation and spiking dynamics, we propose a spatial-temporal feature normalization (STFN) technique suitable for SNN to accelerate convergence. We instantiate our methods into two spiking graph models, including graph convolution SNNs and graph attention SNNs, and validate their performance on three node-classification benchmarks, including Cora, Citeseer, and Pubmed. Our model can achieve comparable performance with the state-of-the-art graph neural network (GNN) models with much lower computation costs, demonstrating great benefits for the execution on neuromorphic hardware and prompting neuromorphic applications in graphical scenarios.

cs.NE↗

arXiv2021

Brain-inspired global-local learning incorporated with neuromorphic computing

Two main routes of learning methods exist at present including error-driven global learning and neuroscience-oriented local learning. Integrating them into one network may provide complementary learning capabilities for versatile learning scenarios. At the same time, neuromorphic computing holds great promise, but still needs plenty of useful algorithms and algorithm-hardware co-designs for exploiting the advantages. Here, we report a neuromorphic hybrid learning model by introducing a brain-inspired meta-learning paradigm and a differentiable spiking model incorporating neuronal dynamics and synaptic plasticity. It can meta-learn local plasticity and receive top-down supervision information for multiscale synergic learning. We demonstrate the advantages of this model in multiple different tasks, including few-shot learning, continual learning, and fault-tolerance learning in neuromorphic vision sensors. It achieves significantly higher performance than single-learning methods, and shows promise in empowering neuromorphic applications revolution. We further implemented the hybrid model in the Tianjic neuromorphic platform by exploiting algorithm-hardware co-designs and proved that the model can fully utilize neuromorphic many-core architecture to develop hybrid computation paradigm.

cs.NE↗

arXiv2021

GNNAdvisor: An Adaptive and Efficient Runtime System for GNN Acceleration on GPUs

As the emerging trend of graph-based deep learning, Graph Neural Networks (GNNs) excel for their capability to generate high-quality node feature vectors (embeddings). However, the existing one-size-fits-all GNN implementations are insufficient to catch up with the evolving GNN architectures, the ever-increasing graph sizes, and the diverse node embedding dimensionalities. To this end, we propose \textbf{GNNAdvisor}, an adaptive and efficient runtime system to accelerate various GNN workloads on GPU platforms. First, GNNAdvisor explores and identifies several performance-relevant features from both the GNN model and the input graph, and uses them as a new driving force for GNN acceleration. Second, GNNAdvisor implements a novel and highly-efficient 2D workload management, tailored for GNN computation to improve GPU utilization and performance under different application settings. Third, GNNAdvisor capitalizes on the GPU memory hierarchy for acceleration by gracefully coordinating the execution of GNNs according to the characteristics of the GPU memory structure and GNN workloads. Furthermore, to enable automatic runtime optimization, GNNAdvisor incorporates a lightweight analytical model for an effective design parameter search. Extensive experiments show that GNNAdvisor outperforms the state-of-the-art GNN computing frameworks, such as Deep Graph Library ($3.02\times$ faster on average) and NeuGraph (up to $4.10\times$ faster), on mainstream GNN architectures across various datasets.

cs.DC↗