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Leonardo Sacconi

Publications and source records attributed to Leonardo Sacconi.

4 recordsLinked to original sources

The functional impact of myofiber macroscopic organization and disarray in computational models of the murine heart

A major challenge in computational models of cardiac electromechanics is the reconstruction of myocardial fiber architecture, as direct in vivo measurements of fiber orientation are not feasible. Consequently, rule-based methods are commonly adopted as surrogates. This study investigates the respective roles of macroscopic fiber architecture and microscopic fiber disarray in cardiac electromechanical simulations. A high-fidelity biventricular electromechanical model of a murine heart was developed using a high-resolution myocardial fiber field obtained via mesoscopic optical imaging, which serves as a reference ground truth. A spatial smoothing strategy is introduced to decouple macroscopic fiber organization from local disarray, and the resulting responses are also compared with those obtained using a rule-based fiber field. The results show that passive mechanics and electrophysiological activation are only weakly affected by fiber disarray, with global chamber compliance and activation times remaining largely unchanged across different fiber descriptions. In contrast, active mechanics is highly sensitive to fiber architecture. Moderate regularization of the experimentally measured fiber field enhances the ventricular pumping efficiency of the computational model by reducing microscopic disarray while preserving the macroscopic helical organization, whereas excessive smoothing or rule-based fiber reconstructions lead to unphysiologically strong or inefficient contraction. Within this framework, two commonly adopted surrogate strategies to account for fiber disarray are investigated: a reduction of the effective cross-bridge stiffness in the active tension model, and the introduction of controlled misalignment between active tension and the local fiber direction. Overall, the results reveal important limitations of commonly adopted surrogate approaches for modeling fiber disarray.

math.NA

Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy

Light-sheet fluorescence microscopy (LSFM) enables real-time whole-brain functional imaging in zebrafish larvae. Conventional one photon LSFM can however induce undesirable visual stimulation due to the use of visible excitation light. The use of two-photon (2P) excitation, employing near-infrared invisible light, provides unbiased investigation of neuronal circuit dynamics. However, due to the low efficiency of the 2P absorption process, the imaging speed of this technique is typically limited by the signal-to-noise-ratio. Here, we describe a 2P LSFM setup designed for non-invasive imaging that enables quintuplicating state-of-the-art volumetric acquisition rate of the larval zebrafish brain (5 Hz) while keeping low the laser intensity on the specimen. We applied our system to the study of pharmacologically-induced acute seizures, characterizing the spatial-temporal dynamics of pathological activity and describing for the first time the appearance of caudo-rostral ictal waves (CRIWs).

q-bio.QM

A versatile clearing agent for multi-modal brain imaging

Extensive mapping of neuronal connections in the central nervous system requires high-throughput um-scale imaging of large volumes. In recent years, different approaches have been developed to overcome the limitations due to tissue light scattering. These methods are generally developed to improve the performance of a specific imaging modality, thus limiting comprehensive neuroanatomical exploration by multimodal optical techniques. Here, we introduce a versatile brain clearing agent (2,2'-thiodiethanol; TDE) suitable for various applications and imaging techniques. TDE is cost-efficient, water-soluble and low-viscous and, more importantly, it preserves fluorescence, is compatible with immunostaining and does not cause deformations at sub-cellular level. We demonstrate the effectiveness of this method in different applications: in fixed samples by imaging a whole mouse hippocampus with serial two-photon tomography; in combination with CLARITY by reconstructing an entire mouse brain with light sheet microscopy and in translational research by imaging immunostained human dysplastic brain tissue.

q-bio.NC

Topology-driven instabilities: the theory of pattern formation on directed networks

The theory of pattern formation in reaction-diffusion systems is extended to the case of a directed network. Due to the structure of the network Laplacian of the scrutinised system, the dispersion relation has both real and imaginary parts, at variance with the conventional case for a symmetric network. It is found that the homogeneous fixed point can become unstable due to the topology of the network, resulting in a new class of instabilities which cannot be induced on undirected graphs. Results from a linear stability analysis allow the instability region to be analytically traced. Numerical simulations show that the instability can lead to travelling waves, or quasi-stationary patterns, depending on the characteristics of the underlying graph. The results presented here could impact on the diverse range of disciplines where directed networks are found, such as neuroscience, computer networks and traffic systems.

nlin.PS