arXiv subjects

Leonas Valkunas

Publications and source records attributed to Leonas Valkunas.

9 recordsLinked to original sources

arXiv2026

Vibronic Landscape of Excitons in Photosynthetic Antenna

Light-harvesting and excitation energy transfer in photosynthesis generally involve chlorophyll-molecules, maintained by their host proteins at short distances from each other, this resulting in excitonic coupling. The transfer of excitation energy to the reaction centers consists of exciton migration and relaxation within and between photosynthetic proteins. The dynamics of this process depends on the vibrational modes resonant with the energy gaps between the participating excited states. The precise structure and vibrational landscape of excitons is thus essential knowledge to understand the amazing efficiency of photosynthesis. In this work, we characterize the vibrational properties of excitons in light-harvesting proteins from purple photosynthetic bacteria, which remarkably unveil on how many bacteriochlorophylls they reside and in which proportions. Vibrational spectra obtained from bacteriochlorophylls in proteins generally contain additional vibronic contributions when compared to isolated pigments, opening additional pathways for vibrationally-assisted excitation energy transfer. In contrast, the absence of new vibronic contributions in the spectra of chlorophyll -containing photosynthetic proteins above 100 cm-1 suggests that in oxygenic photosynthesis, vibrationally-assisted excitation energy transfers occurs through vibrational modes of chlorophyll molecules in equilibrium configuration.

physics.chem-ph↗

arXiv2015

Diversity of coherences and origin of electronic transitions of supermolecular nanoring

Quantum coherence is highly involved in photochemical functioning of complex molecular systems. Co-existence and intermixing of electronic and/or vibrational coherences, while never unambiguously identified experimentally, has been proposed to be responsible for this phenomenon. Analysis of multidimensional spectra of a synthetic belt-shaped molecular six-porphyrin nanoring with an inner template clearly shows a great diversity of separable electronic, vibrational and mixed coherences and their cooperation shaping the optical response. The results yield clear assignment of electronic and vibronic states, estimation of excitation transfer rates, and decoherence times. Theoretical considerations prove that the complexity of excitation dynamics and spectral features of the nanoring excitation spectrum is due to combined effect of cyclic symmetry, small geometrical deformations, and vibronic coupling.

physics.chem-ph↗

arXiv2015

Coherence and population dynamics of chlorophyll excitations in FCP complex: Two-dimensional spectroscopy study

The energy transfer processes and coherent phenomena in the fucoxanthin-chlorophyll protein complex, which is responsible for the light harvesting function in marine algae diatoms, were investigated at 77 K by using two-dimensional electronic spectroscopy. Experiments performed on the femtosecond and picosecond timescales led to separation of spectral dynamics, witnessing evolutions of coherence and population states of the system in the spectral region of ${\rm Q}_{y}$ transitions of chlorophylls $a$ and $c$. Analysis of the coherence dynamics allowed us to identify chlorophyll (Chl) $a$ and fucoxanthin intramolecular vibrations dominating over the first few picoseconds. Closer inspection of the spectral region of the ${\rm Q}_{y}$ transition of Chl $c$ revealed previously not identified mutually non-interacting chlorophyll $c$ states participating in femtosecond or picosecond energy transfer to the Chl $a$ molecules. Consideration of separated coherent and incoherent dynamics allowed us to hypothesize the vibrations-assisted coherent energy transfer between Chl $c$ and Chl $a$ and the overall spatial arrangement of chlorophyll molecules.

physics.chem-ph↗

arXiv2013

Vibronic phenomena and exciton-vibrational interference in two-dimensional spectra of molecular aggregates

A general theory of electronic excitations in aggregates of molecules coupled to intramolecular vibrations and the harmonic environment is developed for simulation of the third-order nonlinear spectroscopy signals. The model is applied in studies of the time-resolved two-dimensional coherent spectra of four characteristic model systems: weakly / strongly vibronically coupled molecular dimers coupled to high / low frequency intramolecular vibrations. The results allow us to classify the typical spectroscopic features as well as to define the limiting cases, when the long-lived quantum coherences are present due to vibrational lifetime borrowing, when the complete exciton-vibronic mixing occurs and when separation of excitonic and vibrational coherences is proper.

physics.chem-ph↗

arXiv2013

Distinctive character of electronic and vibrational coherences in disordered molecular aggregates

Coherent dynamics of coupled molecules are effectively characterized by the two-dimensional (2D) electronic coherent spectroscopy. Depending on the coupling between electronic and vibrational states, oscillating signals of purely electronic, purely vibrational or mixed origin can be observed. Even in the "mixed" molecular systems two types of coherent beats having either electronic or vibrational character can be distinguished by analyzing oscillation Fourier maps, constructed from time-resolved 2D spectra. The amplitude of the beatings with the electronic character is heavily affected by the energetic disorder and consequently electronic coherences are quickly dephased. Beatings with the vibrational character depend weakly on the disorder, assuring their long-time survival. We show that detailed modeling of 2D spectroscopy signals of molecular aggregates providesdirect information on the origin of the coherent beatings.

physics.chem-ph↗

arXiv2012

Vibrational vs. electronic coherences in 2D spectrum of molecular systems

The two-dimensional spectroscopy has recently revealed oscillatory behavior of excitation dynamics in molecular systems. However, in the majority of cases it is strongly debated if excitonic or vibrational wavepackets, or evidences of quantum transport have been observed. In this letter, the method for distinguishing between vibrational and excitonic wavepacket motion is presented, based on the phase and amplitude relationships of oscillations of distinct peaks, which has been revealed using fundamental analysis of two-dimensional spectrum of two representative systems.

physics.chem-ph↗

arXiv2012

Molecular vibrations-induced quantum beats in two-dimensional electronic spectroscopy

Quantum beats in nonlinear spectroscopy of molecular aggregates are often attributed to electronic phenomena of excitonic systems, while nuclear degrees of freedom are commonly included into models as overdamped oscillations of bath constituents responsible for dephasing. However, molecular systems are coupled to various high-frequency molecular vibrations, which can cause the spectral beats hardly distinguishable from those created by purely electronic coherences. Models containing damped, undamped and overdamped vibrational modes coupled to an electronic molecular transition are discussed in this paper in context of linear absorption and two-dimensional electronic spectroscopy. Analysis of different types of bath models demonstrates how do vibrations map onto two-dimensional spectra and how the damping strength of the coherent vibrational modes can be resolved from spectroscopic signals.

physics.chem-ph↗

arXiv2010

Decoherence in Weakly Coupled Excitonic Complexes

Equations of motion for weakly coupled excitonic complexes are derived. The description allows to treat the system in the basis of electronic states localized on individual chromophores, while at the same time accounting for experimentally observable delocalization effects in optical spectra. The equations are show to be related to the well-known Foerster type energy transfer rate equations, but unlike Foerster equations, they provide a description of the decoherence processes leading to suppression of the resonance coupling by bath fluctuations. Linear absorption and two-dimensional photon echo correlation spectra are calculated for simple model systems in homogeneous limit demonstrating distinct delocalization effect and reduction of the resonance coupling due to interaction with the bath.

physics.chem-ph↗

arXiv2010

Exciton Dynamics in Photosynthetic Complexes: Excitation by Coherent and Incoherent Light

In this paper we consider dynamics of a molecular system subjected to external pumping by a light source. Within a completely quantum mechanical treatment, we derive a general formula, which enables to asses effects of different light properties on the photo-induced dynamics of a molecular system. We show that once the properties of light are known in terms of certain two-point correlation function, the only information needed to reconstruct the system dynamics is the reduced evolution superoperator. The later quantity is in principle accessible through ultrafast non-linear spectroscopy. Considering a direct excitation of a small molecular antenna by incoherent light we find that excitation of coherences is possible due to overlap of homogeneous line shapes associated with different excitonic states. In Markov and secular approximations, the amount of coherence is significant only under fast relaxation, and both the populations and coherences between exciton states become static at long time. We also study the case when the excitation of a photosynthetic complex is mediated by a mesoscopic system. We find that such case can be treated by the same formalism with a special correlation function characterizing ultrafast fluctuations of the mesoscopic system. We discuss bacterial chlorosom as an example of such a mesoscopic mediator and propose that the properties of energy transferring chromophore-protein complexes might be specially tuned for the fluctuation properties of their associated antennae.

physics.bio-ph↗