Searcharxiv⌕ Search

arXiv subjects

Leonhard Möckl

Publications and source records attributed to Leonhard Möckl.

2 recordsLinked to original sources

XLuminA: An Auto-differentiating Discovery Framework for Super-Resolution Microscopy

Driven by human ingenuity and creativity, the discovery of super-resolution techniques, which circumvent the classical diffraction limit of light, represent a leap in optical microscopy. However, the vast space encompassing all possible experimental configurations suggests that some powerful concepts and techniques might have not been discovered yet, and might never be with a human-driven direct design approach. Thus, AI-based exploration techniques could provide enormous benefit, by exploring this space in a fast, unbiased way. We introduce XLuminA, an open-source computational framework developed using JAX, which offers enhanced computational speed enabled by its accelerated linear algebra compiler (XLA), just-in-time compilation, and its seamlessly integrated automatic vectorization, auto-differentiation capabilities and GPU compatibility. Remarkably, XLuminA demonstrates a speed-up of 4 orders of magnitude compared to well-established numerical optimization methods. We showcase XLuminA's potential by re-discovering three foundational experiments in advanced microscopy. Ultimately, XLuminA identified a novel experimental blueprint featuring sub-diffraction imaging capabilities. This work constitutes an important step in AI-driven scientific discovery of new concepts in optics and advanced microscopy.

physics.optics↗

BGnet: Accurate and rapid background estimation in single-molecule localization microscopy with deep neural nets

Background fluorescence, especially when it exhibits undesired spatial features, is a primary factor for reduced image quality in optical microscopy. Structured background is particularly detrimental when analyzing single-molecule images for 3D localization microscopy or single-molecule tracking. Here, we introduce BGnet, a deep neural network with a U-net-type architecture, as a general method to rapidly estimate the background underlying the image of a point source with excellent accuracy, even when point spread function (PSF) engineering is in use to create complex PSF shapes. We trained BGnet to extract the background from images of various PSFs and show that the identification is accurate for a wide range of different interfering background structures constructed from many spatial frequencies. Furthermore, we demonstrate that the obtained background-corrected PSF images, both for simulated and experimental data, lead to a substantial improvement in localization precision. Finally, we verify that structured background estimation with BGnet results in higher quality of super-resolution reconstructions of biological structures.

physics.optics↗