arXiv subjects

Letizia Chiodo

Publications and source records attributed to Letizia Chiodo.

8 recordsLinked to original sources

arXiv2025

Impact of Electric Spatially Discordant Alternans on Cardiac Magnetic Field

Spatially discordant alternans (SDA) play a crucial role in cardiac arrhythmogenesis by creating steep repolarization gradients facilitating conduction block and reentry. While traditionally studied using electrical indicators, this work provides a novel perspective by characterizing SDA through their magnetic field signatures. Using a one-dimensional cardiac fiber model, we demonstrate that magnetic field measurements effectively detect SDA and temperature dependent changes in cardiac action potentials, offering a non-invasive alternative to conventional electrophysiological metrics. Our results reveal that the spatial organization of SDA is mirrored in the magnetic field distribution, with SDA nodes clearly identifiable via spatial mapping. Notably, magnetic restitution curves exhibit a distinct pattern from APD-based indicators, closely following the dynamics of the action potential upstroke. These findings establish the cardiac magnetic field as a powerful diagnostic tool for detecting SDA, opening new avenues for biomagnetic monitoring of arrhythmic risk.

physics.med-ph↗

arXiv2024

A statistical mechanics investigation of Unfolded Protein Response across organisms

Living systems rely on coordinated molecular interactions, especially those related to gene expression and protein activity. The Unfolded Protein Response is a crucial mechanism in eukaryotic cells, activated when unfolded proteins exceed a critical threshold. It maintains cell homeostasis by enhancing protein folding, initiating quality control, and activating degradation pathways when damage is irreversible. This response functions as a dynamic signaling network, with proteins as nodes and their interactions as edges. We analyze these protein-protein networks across different organisms to understand their intricate intra-cellular interactions and behaviors. In this work, analyzing twelve organisms, we assess how fundamental measures in network theory can individuate seed-proteins and specific pathways across organisms. We employ network robustness to evaluate and compare the strength of the investigated PPI networks, and the structural controllability of complex networks to find and compare the sets of driver nodes necessary to control the overall networks. We find that network measures are related to phylogenetics, and advanced network methods can identify main pathways of significance in the complete Unfolded Protein Response mechanism.

physics.bio-ph↗

arXiv2024

Magnetic Signature of Thermo-Electric Cardiac Dynamics

Developing new methods for predicting electromagnetic instabilities in cardiac activity is of primary importance. However, we still need a comprehensive view of the heart's magnetic activity at the tissue scale. To fill this gap, we present a model of soft active matter, including thermo-electric coupling, suitably modified to reproduce cardiac magnetic field. Our theoretical framework shows that periodic stimulations of cardiac cells create an external magnetic field evidencing restitution features of nonlinear cardiac dynamics and magnetic restitution curves better discriminate instabilities and bifurcations in cardiac activity. This new framework lays the foundation for innovative, non-invasive diagnostic tools for cardiac arrhythmias.

physics.med-ph↗

arXiv2023

Multiscale Hybrid Modeling of Proteins in Solvent: SARS-CoV2 Spike Protein as test case for Lattice Boltzmann -- All Atom Molecular Dynamics Coupling

Physiological solvent flows surround biological structures triggering therein collective motions. Notable examples are virus/host-cell interactions and solvent-mediated allosteric regulation. The present work describes a multiscale approach joining the Lattice Boltzmann fluid dynamics (for solvent flows) with the all-atom atomistic molecular dynamics (for proteins) to model functional interactions between flows and molecules. We present, as an applicative scenario, the study of the SARS-CoV-2 virus spike glycoprotein protein interacting with the surrounding solvent, modeled as a mesoscopic fluid. The equilibrium properties of the wild-type spike and of the Alpha variant in implicit solvent are described by suitable observables. The mesoscopic solvent description is critically compared to the all-atom solvent model, to quantify the advantages and limitations of the mesoscopic fluid description.

physics.comp-ph↗

arXiv2023

Structural Controllability to Unveil Hidden Regulation Mechanisms in Unfolded Protein Response: the Role of Network Models

The Unfolded Protein Response is the cell mechanism for maintaining the balance of properly folded proteins in the endoplasmic reticulum , the specialized cellular compartment. Although it is largely studied from a biological point of view, much of the literature lacks a quantitative analysis of such a central signaling pathway. In this work, we aim to fill this gap by applying structural controllability analysis of complex networks to several Unfolded Protein Response networks to identify crucial nodes in the signaling flow. In particular, we first build different network models of the Unfolded Protein Response mechanism, relying on data contained in various protein-protein interaction databases. Then, we identify the driver nodes, essential for overall network control, i.e., the key proteins on which external stimulation may be optimally delivered to control network behavior. Our structural controllability analysis results show that the driver nodes commonly identified across databases match with known endoplasmic reticulum stress sensors. This potentially confirms that the theoretically identified drivers correspond to the biological key proteins associated with fundamental cellular activities and diseases. In conclusion, we prove that structural controllability is a reliable quantitative tool to investigate biological signaling pathways, and it can be potentially applied to networks more complex and less explored than Unfolded Protein Response.

q-bio.MN↗

arXiv2017

Strongly bound excitons in anatase TiO2 single crystals and nanoparticles

Anatase TiO$_2$ is among the most studied materials for light-energy conversion applications, but the nature of its fundamental charge excitations is still unknown. Yet it is crucial to establish whether light absorption creates uncorrelated electron-hole pairs or bound excitons and, in the latter case, to determine their character. Here, by combining steady-state angle-resolved photoemission spectroscopy and spectroscopic ellipsometry with state-of-the-art ab initio calculations, we demonstrate that the direct optical gap of single crystals is dominated by a strongly bound exciton rising over the continuum of indirect interband transitions. This exciton possesses an intermediate character between the Wannier-Mott and Frenkel regimes and displays a peculiar two-dimensional wavefunction in the three-dimensional lattice. The nature of the higher-energy excitations is also identified. The universal validity of our results is confirmed up to room temperature by observing the same elementary excitations in defect-rich samples (doped single crystals and nanoparticles) via ultrafast two-dimensional deep-ultraviolet spectroscopy.

cond-mat.mtrl-sci↗

arXiv2017

Anomalous Anisotropic Exciton Temperature Dependence in Rutile TiO2

Elucidating the details of the electron-phonon coupling in semiconductors and insulators is a topic of pivotal interest, as it governs the transport mechanisms and is responsible for various phenomena such as spectral-weight transfers to phonon sidebands and self-trapping. Here, we investigate the influence of the electron-phonon interaction on the excitonic peaks of rutile TiO$_2$, revealing a strong anisotropic polarization dependence with increasing temperature, namely an anomalous blueshift for light polarized along the a-axis and a conventional redshift for light polarized along the c-axis. By employing many-body perturbation theory, we identify two terms in the electron-phonon interaction Hamiltonian that contribute to the anomalous blueshift of the a-axis exciton. Our approach paves the way to a complete ab initio treatment of the electron-phonon interaction and of its influence on the optical spectra of polar materials.

cond-mat.mtrl-sci↗

arXiv2010

Self-Energy and Excitonic Effects in the Electronic and Optical Properties of TiO2 Crystalline Phases

We present a unified ab-initio study of electronic and optical properties of TiO2 rutile and anatase phases, with a combination of Density Functional Theory and Many Body Perturbation Theory techniques. The consistent treatment of exchange-correlation, with the inclusion of many body one-particle and two-particles effects in self-energy and electron-hole interaction, produces a high quality description of electronic and optical properties, giving, for some quantities, the first available estimation for this compound. In particular, we give a quantitative, direct evaluation of the electronic and direct optical gaps, clarifying their role with respect to previous values obtained by various experimental techniques. We obtain a description for both electronic gap and optical spectra that is consistent with experiments, analysing the role of different contributions to the experimental optical gap and relating them to the level of theory used in our calculations. We also show the spatial nature of excitons in the two crystalline phases, highlighting the localization character of different optical transitions. This paper aims at understanding and firmly establishing electro-optical bulk properties, so far not yet clarified, of this material of fundamental and technological interest for green energy applications.

cond-mat.mtrl-sci↗