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Li Yan Khor

Publications and source records attributed to Li Yan Khor.

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From Analytics to Tumor Boards: An Evidence-Linked Multi-Agent Workflow for Oncology Feature Extraction

Clinically relevant oncology information is distributed across heterogeneous, longitudinal documentation, creating substantial abstraction burden and requiring accurate attribution across specimens, tumors, biomarkers, and time points, while manual cancer-registry abstraction can require 27.2 minutes per case, highlighting the need for scalable methods that preserve clinical context while converting documentation into structured data. We evaluate an oncology information-extraction workflow in which OncoLens supplies multi-source, oncology-aware document selection, aggregation, and normalization from integrated EHRs, while the NimbleMind Multi-Agent System (nMAS) is a configurable oncology information-extraction workflow that extracts clinically relevant structured fields from fragmented oncology documentation. The extraction task uses a clinician-informed schema of 328 attributes spanning report metadata, diagnosis, staging, and cancer-type-specific information. nMAS separates clinician-defined field specifications from model execution and combines complexity-aware extraction, report-level consolidation, and source-grounded validation. The retrospective evaluation included 230 de-identified oncology documents from 40 patients and 418 clinician-reviewed document-field pairs containing 1,126 non-empty reference values. Evaluation focused on fields identified by clinicians as present in the source documents rather than exhaustively annotating all 328 schema fields. nMAS achieved a rank-weighted value-level precision of 82.6%, recall of 87.5%, and F1 of 85.0%, compared with an F1 of 66.4% for an independently implemented UMA-style MiniMax M2.5 comparator. These findings support the feasibility of using a configurable, source-grounded extraction workflow to convert fragmented oncology documentation into reusable structured data.

cs.AI

Trust but Verify:Evidence-Linked Multi-Agent Clinical Information Extraction in Pathology

Clinical feature extraction from pathology reports is challenging because relevant evidence may be distributed across coded and narrative fields and depend on specimen attribution, negation, ancillary findings, and diagnostic context. We retrospectively evaluated the NimbleMind Multi-Agent System (nMAS), a configurable workflow that separates clinician-defined field specifications from extraction models and returns report-level predictions with source-linked evidence. The study included 54 dummy gastric biopsy pathology reports from Singapore and four binary target fields, yielding 216 feature-case decisions. nMAS correctly classified 213 of 216 decisions (98.61\%), and all evidence spans associated with correct predictions occurred verbatim in the corresponding source reports. All three errors occurred in the two context-dependent \textit{H. pylori}-related fields requiring negation handling or diagnostic attribution. A single-model UMA-style comparator produced the similar label-level performance and error pattern. These findings do not demonstrate predictive superiority for the multi-agent architecture.Rather, the contribution of nMAS lies in workflow integration and traceability through configurable field specifications, complexity-based routing, report-level aggregation, and source-text validation within a clinician-reviewable workflow. Larger multi-institutional studies should assess generalizability, semantic evidence quality, adaptation effort, and clinician verification time.

cs.AI