arXiv subjects

Lia Papadopoulos

Publications and source records attributed to Lia Papadopoulos.

15 recordsLinked to original sources

arXiv2024

Modulation of metastable ensemble dynamics explains the inverted-U relationship between tone discriminability and arousal in auditory cortex

Past work has reported inverted-U relationships between arousal and auditory task performance, but the underlying neural network mechanisms remain unclear. To make progress, we recorded auditory cortex activity from behaving mice during passive tone presentation and simultaneously monitored pupil-indexed arousal. In these experiments, neural discriminability of tones was maximized at intermediate arousal, revealing a neural correlate of the inverted-U. We explained this arousal-dependent sound processing using a spiking model with clusters. In the model, stimulus discriminability peaked as the network transitioned from a multi-attractor phase exhibiting slow switching between metastable cluster activations (low arousal) to a single-attractor phase with uniform activity (high arousal). This transition also qualitatively captured arousal-induced reductions of neural variability observed in the data. Altogether, this study elucidates computational principles to explain interactions between arousal, neural discriminability, and variability, and suggests that transitions in the dynamical regime of cortical networks could underlie nonlinear modulations of sensory processing.

q-bio.NC↗

arXiv2022

Controlling collective dynamical states of mesoscale brain networks with local perturbations

Oscillatory synchrony is hypothesized to support the flow of information between brain regions, with different phase-locked configurations enabling activation of different effective interactions. Along these lines, past work has proposed multistable phase-locking as a means for hardwired brain networks to flexibly support multiple functional patterns, without having to reconfigure their anatomical connections. Given the potential link between interareal communication and phase-locked states, it is thus important to understand how those states might be controlled to achieve rapid alteration of functional connectivity in interareal circuits. Here, we study functional state control in small networks of coupled neural masses that display collective multistability under determinstic conditions, and that display more biologically-realistic irregular oscillations and transient phase-locking when conditions are stochastic. In particular, we investigate the global responses of these mesoscale circuits to external signals that target only a single subunit. Focusing mainly on the more realistic scenario wherein network dynamics are stochastic, we identify conditions under which local inputs (i) can trigger fast transitions to topologically distinct functional connectivity motifs that are temporarily stable ("state switching"), (ii) can smoothly adjust the spatial pattern of phase-relations for a particular set of lead-lag relationships ("state morphing"), and (iii) fail to regulate global phase-locking states. In total, our results add to a growing literature highlighting that the modulation of multistable, interareal coherence patterns could provide a basis for flexible brain network operation.

q-bio.NC↗

arXiv2021

Broken detailed balance and entropy production in the human brain

Living systems break detailed balance at small scales, consuming energy and producing entropy in the environment in order to perform molecular and cellular functions. However, it remains unclear how broken detailed balance manifests at macroscopic scales, and how such dynamics support higher-order biological functions. Here we present a framework to quantify broken detailed balance by measuring entropy production in macroscopic systems. We apply our method to the human brain, an organ whose immense metabolic consumption drives a diverse range of cognitive functions. Using whole-brain imaging data, we demonstrate that the brain nearly obeys detailed balance when at rest, but strongly breaks detailed balance when performing physically and cognitively demanding tasks. Using a dynamic Ising model, we show that these large-scale violations of detailed balance can emerge from fine-scale asymmetries in the interactions between elements, a known feature of neural systems. Together, these results suggest that violations of detailed balance are vital for cognition, and provide a general tool for quantifying entropy production in macroscopic systems.

physics.bio-ph↗

arXiv2020

Path-dependent Dynamics Induced by Rewiring Networks of Inertial Oscillators

In networks of coupled oscillators, it is of interest to understand how interaction topology affects synchronization. Many studies have gained key insights into this question by studying the classic Kuramoto oscillator model on static networks. However, new questions arise when network structure is time-varying or when the oscillator system is multistable, the latter of which can occur when an inertial term is added to the Kuramoto model. While the consequences of evolving topology and multistability on collective behavior have been examined separately, real-world systems such as gene regulatory networks and the brain can exhibit these properties simultaneously. How does the rewiring of network connectivity affect synchronization in systems with multistability, where different paths of network evolution may differentially impact system dynamics? To address this question, we study the effects of time-evolving network topology on coupled Kuramoto oscillators with inertia. We show that hysteretic synchronization behavior occurs when the network density of coupled inertial oscillators is slowly varied as the dynamics evolve. Moreover, we find that certain fixed-density rewiring schemes induce significant changes to the level of global synchrony, and that these changes remain after the network returns to its initial configuration and are robust to a wide range of network perturbations. Our findings suggest that the specific progression of network topology, in addition to its initial or final static structure, can play a considerable role in modulating the collective behavior of systems evolving on complex networks.

nlin.AO↗

arXiv2020

Human information processing in complex networks

Humans communicate using systems of interconnected stimuli or concepts -- from language and music to literature and science -- yet it remains unclear how, if at all, the structure of these networks supports the communication of information. Although information theory provides tools to quantify the information produced by a system, traditional metrics do not account for the inefficient ways that humans process this information. Here we develop an analytical framework to study the information generated by a system as perceived by a human observer. We demonstrate experimentally that this perceived information depends critically on a system's network topology. Applying our framework to several real networks, we find that they communicate a large amount of information (having high entropy) and do so efficiently (maintaining low divergence from human expectations). Moreover, we show that such efficient communication arises in networks that are simultaneously heterogeneous, with high-degree hubs, and clustered, with tightly-connected modules -- the two defining features of hierarchical organization. Together, these results suggest that many communication networks are constrained by the pressures of information transmission, and that these pressures select for specific structural features.

physics.soc-ph↗

arXiv2020

Relations between large scale brain connectivity and effects of regional stimulation depend on collective dynamical state

At the macroscale, the brain operates as a network of interconnected neuronal populations, which display rhythmic dynamics that support interareal communication. Understanding how stimulation of a particular brain area impacts such concerted activity is important for gaining basic insights into brain function and for developing neuromodulation as a therapeutic tool. However, it remains difficult to predict the downstream effects of focal stimulation. Specifically, little is known about how the collective oscillatory regime of network activity may affect the outcomes of regional perturbations on cooperative dynamics. Here, we combine connectome data and biophysical modeling to begin filling these gaps. By tuning parameters that control the collective dynamics of the network, we identify distinct states of simulated brain activity, and investigate how the distributed effects of stimulation manifest in different states. When baseline oscillations are weak, the stimulated area exhibits enhanced power and frequency, and due to network interactions, nearby regions develop phase locked activity in the excited frequency band. Importantly, we find that focal stimulation also causes more distributed modifications to network coherence at regions' baseline oscillation frequencies, and that these effects are better predicted by functional rather than structural connectivity. In contrast, when the network operates in a regime of stronger endogenous oscillations, stimulation causes only slight shifts in power and frequency, and network averaged changes in coherence are more homogenous across the choice of the stimulated area. In sum, this work builds upon and extends previous computational studies investigating the impacts of stimulation, and highlights that both the stimulation site, and, crucially, the regime of brain network dynamics, can influence the network wide responses to local perturbations.

q-bio.NC↗

arXiv2019

Multiscale and multimodal network dynamics underpinning working memory

Working memory (WM) allows information to be stored and manipulated over short time scales. Performance on WM tasks is thought to be supported by the frontoparietal system (FPS), the default mode system (DMS), and interactions between them. Yet little is known about how these systems and their interactions relate to individual differences in WM performance. We address this gap in knowledge using functional MRI data acquired during the performance of a 2-back WM task, as well as diffusion tensor imaging data collected in the same individuals. We show that the strength of functional interactions between the FPS and DMS during task engagement is inversely correlated with WM performance, and that this strength is modulated by the activation of FPS regions but not DMS regions. Next, we use a clustering algorithm to identify two distinct subnetworks of the FPS, and find that these subnetworks display distinguishable patterns of gene expression. Activity in one subnetwork is positively associated with the strength of FPS-DMS functional interactions, while activity in the second subnetwork is negatively associated. Further, the pattern of structural linkages of these subnetworks explains their differential capacity to influence the strength of FPS-DMS functional interactions. To determine whether these observations could provide a mechanistic account of large-scale neural underpinnings of WM, we build a computational model of the system composed of coupled oscillators. Modulating the amplitude of the subnetworks in the model causes the expected change in the strength of FPS-DMS functional interactions, thereby offering support for a mechanism in which subnetwork activity tunes functional interactions. Broadly, our study presents a holistic account of how regional activity, functional interactions, and structural linkages together support individual differences in WM in humans.

q-bio.NC↗

arXiv2019

Surges of collective human activity emerge from simple pairwise correlations

Human populations exhibit complex behaviors---characterized by long-range correlations and surges in activity---across a range of social, political, and technological contexts. Yet it remains unclear where these collective behaviors come from, or if there even exists a set of unifying principles. Indeed, existing explanations typically rely on context-specific mechanisms, such as traffic jams driven by work schedules or spikes in online traffic induced by significant events. However, analogies with statistical mechanics suggest a more general mechanism: that collective patterns can emerge organically from fine-scale interactions within a population. Here, across four different modes of human activity, we show that the simplest correlations in a population---those between pairs of individuals---can yield accurate quantitative predictions for the large-scale behavior of the entire population. To quantify the minimal consequences of pairwise correlations, we employ the principle of maximum entropy, making our description equivalent to an Ising model whose interactions and external fields are notably calculated from past observations of population activity. In addition to providing accurate quantitative predictions, we show that the topology of learned Ising interactions resembles the network of inter-human communication within a population. Together, these results demonstrate that fine-scale correlations can be used to predict large-scale social behaviors, a perspective that has critical implications for modeling and resource allocation in human populations.

physics.soc-ph↗

arXiv2018

Network architecture of energy landscapes in mesoscopic quantum systems

Mesoscopic quantum systems exhibit complex many-body quantum phenomena, where interactions between spins and charges give rise to collective modes and topological states. Even simple, non-interacting theories display a rich landscape of energy states --- distinct many-particle configurations connected by spin- and energy-dependent transition rates. The collective energy landscape is difficult to characterize or predict, especially in regimes of frustration where many-body effects create a multiply degenerate landscape. Here we use network science to characterize the complex interconnection patterns of these energy-state transitions. Using an experimentally verified computational model of electronic transport through quantum antidots, we construct networks where nodes represent accessible energy states and edges represent allowed transitions. We then explore how physical changes in currents and voltages are reflected in the network topology. We find that the networks exhibit Rentian scaling, which is characteristic of efficient transportation systems in computer circuitry, neural circuitry, and human mobility, and can be used to measure the interconnection complexity of a network. Remarkably, networks corresponding to points of frustration in quantum transport (due, for example, to spin-blockade effects) exhibit an enhanced topological complexity relative to networks not experiencing frustration. Our results demonstrate that network characterizations of the abstract topological structure of energy landscapes can capture salient properties of quantum transport. More broadly, our approach motivates future efforts to use network science in understanding the dynamics and control of complex quantum systems.

cond-mat.mes-hall↗

arXiv2017

Network Analysis of Particles and Grains

The arrangements of particles and forces in granular materials have a complex organization on multiple spatial scales that ranges from local structures to mesoscale and system-wide ones. This multiscale organization can affect how a material responds or reconfigures when exposed to external perturbations or loading. The theoretical study of particle-level, force-chain, domain, and bulk properties requires the development and application of appropriate physical, mathematical, statistical, and computational frameworks. Traditionally, granular materials have been investigated using particulate or continuum models, each of which tends to be implicitly agnostic to multiscale organization. Recently, tools from network science have emerged as powerful approaches for probing and characterizing heterogeneous architectures across different scales in complex systems, and a diverse set of methods have yielded fascinating insights into granular materials. In this paper, we review work on network-based approaches to studying granular matter and explore the potential of such frameworks to provide a useful description of these systems and to enhance understanding of their underlying physics. We also outline a few open questions and highlight particularly promising future directions in the analysis and design of granular matter and other kinds of material networks.

cond-mat.soft↗

arXiv2017

Development of structural correlations and synchronization from adaptive rewiring in networks of Kuramoto oscillators

Synchronization of non-identical oscillators coupled through complex networks is an important example of collective behavior. It is interesting to ask how the structural organization of network interactions influences this process. Several studies have uncovered optimal topologies for synchronization by making purposeful alterations to a network. Yet, the connectivity patterns of many natural systems are often not static, but are rather modulated over time according to their dynamics. This co-evolution - and the extent to which the dynamics of the individual units can shape the organization of the network itself - is not well understood. Here, we study initially randomly connected but locally adaptive networks of Kuramoto oscillators. The system employs a co-evolutionary rewiring strategy that depends only on instantaneous, pairwise phase differences of neighboring oscillators, and that conserves the total number of edges, allowing the effects of local reorganization to be isolated. We find that a simple regulatory rule - which preserves connections between more out-of-phase oscillators while rewiring connections between more in-phase oscillators - can cause initially disordered networks to organize into more structured topologies that support enhanced synchronization dynamics. We examine how this process unfolds over time, finding both a dependence on the intrinsic frequencies of the oscillators and the global coupling. For large enough coupling and after sufficient adaptation, the resulting networks exhibit degree - frequency and frequency - neighbor frequency correlations. These properties have previously been associated with optimal synchronization or explosive transitions. By considering a time-dependent interplay between structure and dynamics, this work offers a mechanism through which emergent phenomena can arise in complex systems utilizing local rules.

nlin.AO↗

arXiv2016

Embedding of biological distribution networks with differing environmental constraints

Distribution networks -- from vasculature to urban transportation systems -- are prevalent in both the natural and consumer worlds. These systems are intrinsically physical in composition and are embedded into real space, properties that lead to constraints on their topological organization. In this study, we compare and contrast two types of biological distribution networks: mycelial fungi and the vasculature system on the surface of rodent brains. Both systems are alike in that they must route resources efficiently, but they are also inherently distinct in terms of their growth mechanisms, and in that fungi are not attached to a larger organism and must often function in unregulated and varied environments. We begin by uncovering a common organizational principle -- Rentian scaling -- that manifests as hierarchical network layout in both physical and topological space. Simulated models of distribution networks optimized for transport in the presence of fluctuations are also shown to exhibit this feature in their embedding, with similar scaling exponents. However, we also find clear differences in how the fungi and vasculature balance tradeoffs in material cost, efficiency, and robustness. While the vasculature appear well optimized for low cost, but relatively high efficiency, the fungi tend to form more expensive but in turn more robust networks. These differences may be driven by the distinct functions that each system must perform, and the different habitats in which they reside. As a whole, this work demonstrates that distribution networks contain a set of common, emergent design features, as well as tailored optimizations.

q-bio.QM↗

arXiv2016

The modular organization of human anatomical brain networks: Accounting for the cost of wiring

Brain networks are expected to be modular. However, existing techniques for estimating a network's modules make it difficult to assess the influence of organizational principles such as wiring cost reduction on the detected modules. Here, we present a modification of an existing module detection algorithm that allows us to focus on connections that are unexpected under a cost-reduction wiring rule and to identify modules from among these connections. We apply this technique to anatomical brain networks and show that the modules we detect differ from those detected using the standard technique. We demonstrate that these novel modules are spatially distributed, exhibit unique functional fingerprints, and overlap considerably with rich clubs, giving rise to an alternative and complementary interpretation of the functional roles of specific brain regions. Finally, we demonstrate that, using the modified module detection approach, we can detect modules in a developmental dataset that track normative patterns of maturation. Collectively, these findings support the hypothesis that brain networks are composed of modules and provide additional insight into the function of those modules.

q-bio.NC↗

arXiv2016

Topological and geometric measurements of force chain structure

Developing quantitative methods for characterizing structural properties of force chains in densely packed granular media is an important step toward understanding or predicting large-scale physical properties of a packing. A promising framework in which to develop such methods is network science, which can be used to translate particle locations and force contacts to a graph in which particles are represented by nodes and forces between particles are represented by weighted edges. Applying network-based community-detection techniques to extract force chains opens the door to developing statistics of force chain structure, with the goal of identifying shape differences across packings, and providing a foundation on which to build predictions of bulk material properties from mesoscale network features. Here, we discuss a trio of related but fundamentally distinct measurements of mesoscale structure of force chains in arbitrary 2D packings, including a novel statistic derived using tools from algebraic topology, which together provide a tool set for the analysis of force chain architecture. We demonstrate the utility of this tool set by detecting variations in force chain architecture with pressure. Collectively, these techniques can be generalized to 3D packings, and to the assessment of continuous deformations of packings under stress or strain.

cond-mat.soft↗

arXiv2016

Evolution of network architecture in a granular material under compression

As a granular material is compressed, the particles and forces within the system arrange to form complex heterogeneous structures. Force chains are a prime example and are thought to constrain bulk properties such as mechanical stability and acoustic transmission. However, characterizing the dynamic nature of mesoscale architectures in granular systems can be challenging. A growing body of work has shown that graph theoretic approaches may provide a useful foundation for tackling these problems. Here, we extend current approaches by utilizing multilayer networks as a framework for directly quantifying the evolution of mesoscale architecture in a compressed granular system. We examine a quasi-two-dimensional aggregate of photoelastic disks, subject to biaxial compression through a series of small, quasistatic steps. Treating particles as network nodes and inter-particle forces as network edges, we construct a multilayer network by linking together the series of static force networks that exist at each strain step. We then extract the inherent mesoscale structure from the system by using a generalization of community detection methods, and we define quantitative measures to characterize the reconfiguration and evolution of this structure throughout compression. By separately considering the network of normal and tangential forces, we find that they display different structural evolution. To test the sensitivity of the network model to particle properties, we examine whether the method can distinguish a subsystem of low-friction particles within a bath of higher-friction particles. We find that this can be done by considering the network of tangential forces. The results discussed throughout this study suggest that these novel network science techniques may provide a direct way to compare and classify data from systems under different external conditions or with different physical makeup.

cond-mat.soft↗