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Lingyuan Zhao

Publications and source records attributed to Lingyuan Zhao.

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AgroOmni: A Large-Scale Multi-view Agricultural Dataset for Cross-Scale Multimodal Reasoning

Modern agricultural data is sourced from diverse platforms and spans multiple spatial scales, ranging from ground-level close-up photography to Unmanned Aerial Vehicle (UAV) aerial observation and satellite remote sensing imagery. Accordingly, agricultural multimodal reasoning demands robust cross-scale spatial understanding. However, due to the lack of multi-view agricultural benchmark datasets, existing multimodal large language models (MLLMs) exhibit severe ground-level bias, which leads to scale confusion then semantic collapse in agricultural perception tasks, such as misinterpreting farmland imagery as walls or floors. To address this, we introduce AgroOmni, a large-scale multi-view training corpus with 288K Visual Question Answering pairs covering 56 specialized task categories across 14 task types, designed to capture diverse scales in modern precision agriculture. Built on this dataset, we propose AgroNVILA, which achieves a new state-of-the-art of 62.32% on the AgroMind benchmark (+15.03% over GPT-5.2), effectively mitigating the multi-view cross-scale gap for holistic agricultural understanding. Diagnostic evaluations on AgMMU further reveal an inherent heterogeneity between macro-priors and micro-diagnostics through constrained zero-shot performance. Meanwhile, even minimal fine-tuning leads to a dramatic performance gain of AgroNVILA on AgMMU, strongly demonstrating its generalization capability empowered by AgroOmni. Full training scripts are publicly available at https://anonymous.4open.science/r/AgroOmni-6510.

cs.CV

AgroCoT: A Chain-of-Thought Benchmark for Evaluating Reasoning in Vision-Language Models for Agriculture

Recent advancements in Vision-Language Models (VLMs) have significantly impacted various industries. In agriculture, these multimodal capabilities hold great promise for applications such as precision farming, crop monitoring, pest detection, and environmental sustainability. However, while several Visual Question Answering (VQA) datasets and benchmarks have been developed to assess VLM performance, they often fail to effectively evaluate the critical reasoning and problem-solving skills needed in complex agricultural contexts. To address this gap, we introduce AgroCoT, a VQA dataset that integrates Chain-of-Thought (CoT) reasoning, specifically designed to evaluate the reasoning capabilities of VLMs. With 4,759 carefully curated samples, AgroCoT provides a comprehensive and robust evaluation of reasoning abilities, particularly in zero-shot scenarios, focusing on the models' ability to engage in logical reasoning and effective problem-solving. Our evaluation of 30 representative VLMs, including both proprietary and open-source models, reveals a gap in their reasoning capabilities, which underscores the importance of incorporating CoT for assessments. Our dataset is available at https://huggingface.co/datasets/AgroCoT/AgroCoT.

cs.AI

Local Variable and Neighborhood Selection for Firearm Fatality in the Southeast USA

A major public health concern in the United States (US) is gun-related deaths. The number of gun injuries largely varies spatially because of county-wise heterogeneity of race, sex, age, and income distributions. But still, a major challenge is to locally identify the influential socio-economic factors behind these firearm fatality incidents. For a diverging number of predictors, a rich literature exists regarding SCAD under the independence framework; however, a vacuum remains when discussing local variable selection for spatially correlated, over-dispersed data. This research presents a two-step localized variable selection and inference framework for spatially indexed gunshot fatality data. In the first step, we select variables locally using the SCAD penalty for specific locations where the number of gunshot incidents exceeds a threshold. For these locations, after selecting the predictors, we proceed to the next step, which involves examining the directional variation in the latent spatial neighborhood structure. We further discuss the theoretical properties of this county-specific local variable selection under infill asymptotics. This method has threefold advantages: (i) this method selects the variables locally, (ii) this method provides inference about directional variation of a selected predictor, and (iii) instead of assuming the spatial neighborhood structure in an ad hoc manner, this method identifies the specific type of spatial neighborhood structure that is most appropriate for modeling the random effects.

stat.ME

MAT-MPNN: A Mobility-Aware Transformer-MPNN Model for Dynamic Spatiotemporal Prediction of HIV Diagnoses in California, Florida, and New England

Human Immunodeficiency Virus (HIV) has posed a major global health challenge for decades, and forecasting HIV diagnoses continues to be a critical area of research. However, capturing the complex spatial and temporal dependencies of HIV transmission remains challenging. Conventional Message Passing Neural Network (MPNN) models rely on a fixed binary adjacency matrix that only encodes geographic adjacency, which is unable to represent interactions between non-contiguous counties. Our study proposes a deep learning architecture Mobility-Aware Transformer-Message Passing Neural Network (MAT-MPNN) framework to predict county-level HIV diagnosis rates across California, Florida, and the New England region. The model combines temporal features extracted by a Transformer encoder with spatial relationships captured through a Mobility Graph Generator (MGG). The MGG improves conventional adjacency matrices by combining geographic and demographic information. Compared with the best-performing hybrid baseline, the Transformer MPNN model, MAT-MPNN reduced the Mean Squared Prediction Error (MSPE) by 27.9% in Florida, 39.1% in California, and 12.5% in New England, and improved the Predictive Model Choice Criterion (PMCC) by 7.7%, 3.5%, and 3.9%, respectively. MAT-MPNN also achieved better results than the Spatially Varying Auto-Regressive (SVAR) model in Florida and New England, with comparable performance in California. These results demonstrate that applying mobility-aware dynamic spatial structures substantially enhances predictive accuracy and calibration in spatiotemporal epidemiological prediction.

q-bio.QM

A Comprehensive Review of Agricultural Parcel and Boundary Delineation from Remote Sensing Images: Recent Progress and Future Perspectives

Powered by advances in multiple remote sensing sensors, the production of high spatial resolution images provides great potential to achieve cost-efficient and high-accuracy agricultural inventory and analysis in an automated way. Lots of studies that aim at providing an inventory of the level of each agricultural parcel have generated many methods for Agricultural Parcel and Boundary Delineation (APBD). This review covers APBD methods for detecting and delineating agricultural parcels and systematically reviews the past and present of APBD-related research applied to remote sensing images. With the goal to provide a clear knowledge map of existing APBD efforts, we conduct a comprehensive review of recent APBD papers to build a meta-data analysis, including the algorithm, the study site, the crop type, the sensor type, the evaluation method, etc. We categorize the methods into three classes: (1) traditional image processing methods (including pixel-based, edge-based and region-based); (2) traditional machine learning methods (such as random forest, decision tree); and (3) deep learning-based methods. With deep learning-oriented approaches contributing to a majority, we further discuss deep learning-based methods like semantic segmentation-based, object detection-based and Transformer-based methods. In addition, we discuss five APBD-related issues to further comprehend the APBD domain using remote sensing data, such as multi-sensor data in APBD task, comparisons between single-task learning and multi-task learning in the APBD domain, comparisons among different algorithms and different APBD tasks, etc. Finally, this review proposes some APBD-related applications and a few exciting prospects and potential hot topics in future APBD research. We hope this review help researchers who involved in APBD domain to keep track of its development and tendency.

cs.CV