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Linjun Zhang

Publications and source records attributed to Linjun Zhang.

At least 55 records · Page 3Linked to original sources
arXiv2025

Repro Samples Method for Model-Free Inference in High-Dimensional Binary Classification

This paper presents a novel method for statistical inference in high-dimensional binary models with unspecified structure, where we leverage a (potentially misspecified) sparsity-constrained working generalized linear model (GLM) to facilitate the inference process. Our method is based on the repro samples framework, which generates artificial samples that mimic the actual data-generating process. Our inference targets include the model support, case probabilities, and the oracle regression coefficients defined in the working GLM. The proposed method has three major advantages. First, this approach is model-free, that is, it does not rely on specific model assumptions such as logistic or probit regression, nor does it require sparsity assumptions on the underlying model. Second, for model support, we construct a model candidate set for the most influential covariates that achieves guaranteed coverage under a weak signal strength assumption. Third, for oracle regression coefficients, we establish confidence sets for any group of linear combinations of regression coefficients. Simulation results demonstrate that the proposed method produces valid and small model candidate sets. It also achieves better coverage for regression coefficients than the state-of-the-art debiasing methods when the working model is the actual model that generates the sample data. Additionally, we analyze single-cell RNA-seq data on the immune response. Besides identifying genes previously proven as relevant in the literature, our method also discovers a significant gene that has not been studied before, revealing a potential new direction in understanding cellular immune response mechanisms.

stat.ME↗
arXiv2025

AceSearcher: Bootstrapping Reasoning and Search for LLMs via Reinforced Self-Play

Search-augmented LLMs often struggle with complex reasoning tasks due to ineffective multi-hop retrieval and limited reasoning ability. We propose AceSearcher, a cooperative self-play framework that trains a single large language model (LLM) to alternate between two roles: a decomposer that breaks down complex queries and a solver that integrates retrieved contexts for answer generation. AceSearcher couples supervised fine-tuning on a diverse mixture of search, reasoning, and decomposition tasks with reinforcement fine-tuning optimized for final answer accuracy, eliminating the need for intermediate annotations. Extensive experiments on three reasoning-intensive tasks across 10 datasets show that AceSearcher outperforms state-of-the-art baselines, achieving an average exact match improvement of 7.6%. Remarkably, on document-level finance reasoning tasks, AceSearcher-32B matches the performance of the DeepSeek-V3 model using less than 5% of its parameters. Even at smaller scales (1.5B and 8B), AceSearcher often surpasses existing search-augmented LLMs with up to 9x more parameters, highlighting its exceptional efficiency and effectiveness in tackling complex reasoning tasks. Our code will be published at https://github.com/ritaranx/AceSearcher and https://huggingface.co/AceSearcher.

cs.CL↗
arXiv2025

Contrastive Network Representation Learning

Network representation learning seeks to embed networks into a low-dimensional space while preserving the structural and semantic properties, thereby facilitating downstream tasks such as classification, trait prediction, edge identification, and community detection. Motivated by challenges in brain connectivity data analysis that is characterized by subject-specific, high-dimensional, and sparse networks that lack node or edge covariates, we propose a novel contrastive learning-based statistical approach for network edge embedding, which we name as Adaptive Contrastive Edge Representation Learning (ACERL). It builds on two key components: contrastive learning of augmented network pairs, and a data-driven adaptive random masking mechanism. We establish the non-asymptotic error bounds, and show that our method achieves the minimax optimal convergence rate for edge representation learning. We further demonstrate the applicability of the learned representation in multiple downstream tasks, including network classification, important edge detection, and community detection, and establish the corresponding theoretical guarantees. We validate our method through both synthetic data and real brain connectivities studies, and show its competitive performance compared to the baseline method of sparse principal components analysis.

stat.ML↗
arXiv2025

UQ: Assessing Language Models on Unsolved Questions

Benchmarks shape progress in AI research. A useful benchmark should be both difficult and realistic: questions should challenge frontier models while also reflecting real-world usage. Yet, current paradigms face a difficulty-realism tension: exam-style benchmarks are often made artificially difficult with limited real-world value, while benchmarks based on real user interaction often skew toward easy, high-frequency problems. In this work, we explore a radically different paradigm: assessing models on unsolved questions. Rather than a static benchmark scored once, we curate unsolved questions and evaluate models asynchronously over time with validator-assisted screening and community verification. We introduce UQ, a testbed of 500 challenging, diverse questions sourced from Stack Exchange, spanning topics from CS theory and math to sci-fi and history, probing capabilities including reasoning, factuality, and browsing. UQ is difficult and realistic by construction: unsolved questions are often hard and naturally arise when humans seek answers, thus solving them yields direct real-world value. Our contributions are threefold: (1) UQ-Dataset and its collection pipeline combining rule-based filters, LLM judges, and human review to ensure question quality (e.g., well-defined and difficult); (2) UQ-Validators, compound validation strategies that leverage the generator-validator gap to provide evaluation signals and pre-screen candidate solutions for human review; and (3) UQ-Platform, an open platform where experts collectively verify questions and solutions. The top model passes UQ-validation on only 15% of questions, and preliminary human verification has already identified correct answers among those that passed. UQ charts a path for evaluating frontier models on real-world, open-ended challenges, where success pushes the frontier of human knowledge. We release UQ at https://uq.stanford.edu.

cs.CL↗
arXiv2025

MPO: An Efficient Post-Processing Framework for Mixing Diverse Preference Alignment

Reinforcement Learning from Human Feedback (RLHF) has shown promise in aligning large language models (LLMs). Yet its reliance on a singular reward model often overlooks the diversity of human preferences. Recent approaches address this limitation by leveraging multi-dimensional feedback to fine-tune corresponding reward models and train LLMs using reinforcement learning. However, the process is costly and unstable, especially given the competing and heterogeneous nature of human preferences. In this paper, we propose Mixing Preference Optimization (MPO), a post-processing framework for aggregating single-objective policies as an alternative to both multi-objective RLHF (MORLHF) and MaxMin-RLHF. MPO avoids alignment from scratch. Instead, it log-linearly combines existing policies into a unified one with the weight of each policy computed via a batch stochastic mirror descent. Empirical results demonstrate that MPO achieves balanced performance across diverse preferences, outperforming or matching existing models with significantly reduced computational costs.

cs.CL↗
arXiv2025

Mitigating Heterogeneous Token Overfitting in LLM Knowledge Editing

Large language models (LLMs) have achieved remarkable performance on various natural language tasks. However, they are trained on static corpora and their knowledge can become outdated quickly in the fast-changing world. This motivates the development of knowledge editing (KE) to update specific knowledge in LLMs without changing unrelated others or compromising their pre-trained capabilities. Previous efforts sought to update a small amount of parameters of a LLM and proved effective for making selective updates. Nonetheless, the edited LLM often exhibits degraded ability to reason about the new knowledge. In this work, we identify a key issue: heterogeneous token overfitting (HTO), where the LLM overfits different tokens in the provided knowledge at varying rates. To tackle this, we propose OVERTONE, a token-level smoothing method that mitigates HTO by adaptively refining the target distribution. Theoretically, OVERTONE offers better parameter updates with negligible computation overhead. It also induces an implicit DPO but does not require preference data pairs. Extensive experiments across four editing methods, two LLMs, and diverse scenarios demonstrate the effectiveness and versatility of our method.

cs.CL↗
arXiv2025

Differentially Private Sliced Inverse Regression: Minimax Optimality and Algorithm

Privacy preservation has become a critical concern in high-dimensional data analysis due to the growing prevalence of data-driven applications. Since its proposal, sliced inverse regression has emerged as a widely utilized statistical technique to reduce the dimensionality of covariates while maintaining sufficient statistical information. In this paper, we propose optimally differentially private algorithms specifically designed to address privacy concerns in the context of sufficient dimension reduction. We establish lower bounds for differentially private sliced inverse regression in low and high dimensional settings. Moreover, we develop differentially private algorithms that achieve the minimax lower bounds up to logarithmic factors. Through a combination of simulations and real data analysis, we illustrate the efficacy of these differentially private algorithms in safeguarding privacy while preserving vital information within the reduced dimension space. As a natural extension, we can readily offer analogous lower and upper bounds for differentially private sparse principal component analysis, a topic that may also be of potential interest to the statistics and machine learning community.

stat.ML↗
arXiv2025

A Theoretical Framework for Prompt Engineering: Approximating Smooth Functions with Transformer Prompts

Prompt engineering has emerged as a powerful technique for guiding large language models (LLMs) toward desired responses, significantly enhancing their performance across diverse tasks. Beyond their role as static predictors, LLMs increasingly function as intelligent agents, capable of reasoning, decision-making, and adapting dynamically to complex environments. However, the theoretical underpinnings of prompt engineering remain largely unexplored. In this paper, we introduce a formal framework demonstrating that transformer models, when provided with carefully designed prompts, can act as a configurable computational system by emulating a ``virtual'' neural network during inference. Specifically, input prompts effectively translate into the corresponding network configuration, enabling LLMs to adjust their internal computations dynamically. Building on this construction, we establish an approximation theory for $β$-times differentiable functions, proving that transformers can approximate such functions with arbitrary precision when guided by appropriately structured prompts. Moreover, our framework provides theoretical justification for several empirically successful prompt engineering techniques, including the use of longer, structured prompts, filtering irrelevant information, enhancing prompt token diversity, and leveraging multi-agent interactions. By framing LLMs as adaptable agents rather than static models, our findings underscore their potential for autonomous reasoning and problem-solving, paving the way for more robust and theoretically grounded advancements in prompt engineering and AI agent design.

cs.LG↗
arXiv2025

FaiREE: Fair Classification with Finite-Sample and Distribution-Free Guarantee

Algorithmic fairness plays an increasingly critical role in machine learning research. Several group fairness notions and algorithms have been proposed. However, the fairness guarantee of existing fair classification methods mainly depends on specific data distributional assumptions, often requiring large sample sizes, and fairness could be violated when there is a modest number of samples, which is often the case in practice. In this paper, we propose FaiREE, a fair classification algorithm that can satisfy group fairness constraints with finite-sample and distribution-free theoretical guarantees. FaiREE can be adapted to satisfy various group fairness notions (e.g., Equality of Opportunity, Equalized Odds, Demographic Parity, etc.) and achieve the optimal accuracy. These theoretical guarantees are further supported by experiments on both synthetic and real data. FaiREE is shown to have favorable performance over state-of-the-art algorithms.

stat.ML↗
arXiv2025

MMed-RAG: Versatile Multimodal RAG System for Medical Vision Language Models

Artificial Intelligence (AI) has demonstrated significant potential in healthcare, particularly in disease diagnosis and treatment planning. Recent progress in Medical Large Vision-Language Models (Med-LVLMs) has opened up new possibilities for interactive diagnostic tools. However, these models often suffer from factual hallucination, which can lead to incorrect diagnoses. Fine-tuning and retrieval-augmented generation (RAG) have emerged as methods to address these issues. However, the amount of high-quality data and distribution shifts between training data and deployment data limit the application of fine-tuning methods. Although RAG is lightweight and effective, existing RAG-based approaches are not sufficiently general to different medical domains and can potentially cause misalignment issues, both between modalities and between the model and the ground truth. In this paper, we propose a versatile multimodal RAG system, MMed-RAG, designed to enhance the factuality of Med-LVLMs. Our approach introduces a domain-aware retrieval mechanism, an adaptive retrieved contexts selection method, and a provable RAG-based preference fine-tuning strategy. These innovations make the RAG process sufficiently general and reliable, significantly improving alignment when introducing retrieved contexts. Experimental results across five medical datasets (involving radiology, ophthalmology, pathology) on medical VQA and report generation demonstrate that MMed-RAG can achieve an average improvement of 43.8% in the factual accuracy of Med-LVLMs. Our data and code are available in https://github.com/richard-peng-xia/MMed-RAG.

cs.LG↗
arXiv2025

An Overview of Large Language Models for Statisticians

Large Language Models (LLMs) have emerged as transformative tools in artificial intelligence (AI), exhibiting remarkable capabilities across diverse tasks such as text generation, reasoning, and decision-making. While their success has primarily been driven by advances in computational power and deep learning architectures, emerging problems -- in areas such as uncertainty quantification, decision-making, causal inference, and distribution shift -- require a deeper engagement with the field of statistics. This paper explores potential areas where statisticians can make important contributions to the development of LLMs, particularly those that aim to engender trustworthiness and transparency for human users. Thus, we focus on issues such as uncertainty quantification, interpretability, fairness, privacy, watermarking and model adaptation. We also consider possible roles for LLMs in statistical analysis. By bridging AI and statistics, we aim to foster a deeper collaboration that advances both the theoretical foundations and practical applications of LLMs, ultimately shaping their role in addressing complex societal challenges.

stat.ML↗
arXiv2025

Differentially Private Learning Beyond the Classical Dimensionality Regime

We initiate the study of differentially private learning in the proportional dimensionality regime, in which the number of data samples $n$ and problem dimension $d$ approach infinity at rates proportional to one another, meaning that $d/n\toδ$ as $n\to\infty$ for an arbitrary, given constant $δ\in(0,\infty)$. This setting is significantly more challenging than that of all prior theoretical work in high-dimensional differentially private learning, which, despite the name, has assumed that $δ= 0$ or is sufficiently small for problems of sample complexity $O(d)$, a regime typically considered "low-dimensional" or "classical" by modern standards in high-dimensional statistics. We provide sharp theoretical estimates of the error of several well-studied differentially private algorithms for robust linear regression and logistic regression, including output perturbation, objective perturbation, and noisy stochastic gradient descent, in the proportional dimensionality regime. The $1+o(1)$ factor precision of our error estimates enables a far more nuanced understanding of the price of privacy of these algorithms than that afforded by existing, coarser analyses, which are essentially vacuous in the regime we consider. Using our estimates, we discover a previously unobserved "double descent"-like phenomenon in the training error of objective perturbation for robust linear regression. We also identify settings in which output perturbation outperforms objective perturbation on average, and vice versa, demonstrating that the relative performance of these algorithms is less clear-cut than suggested by prior work. To prove our main theorems, we introduce several probabilistic tools that have not previously been used to analyze differentially private learning algorithms, such as a modern Gaussian comparison inequality and recent universality laws with origins in statistical physics.

cs.LG↗
arXiv2025

RoseRAG: Robust Retrieval-augmented Generation with Small-scale LLMs via Margin-aware Preference Optimization

Large language models (LLMs) have achieved impressive performance but face high computational costs and latency, limiting their deployment in resource-constrained settings. In contrast, small-scale LLMs (SLMs) are more efficient yet struggle to capture evolving real-world knowledge. Retrieval-augmented generation (RAG) helps by integrating external knowledge, but imperfect retrieval can introduce distracting noise that misleads SLMs. We propose RoseRAG, a robust RAG framework for SLMs via Margin-aware Preference Optimization. RoseRAG employs multi-turn prompting for detailed reasoning, rejection sampling for high-quality explanations, and contrastive preference selection to refine responses by maximizing the likelihood gap between preferred and non-preferred outputs. By integrating these components into a margin-aware optimization process, RoseRAG robustly enhances the accuracy and reliability of SLMs for RAG applications. Extensive experiments on three open-domain question answering benchmarks indicate that our innovative RoseRAG surpasses state-of-the-art baselines significantly.

cs.CL↗
arXiv2024

S$^{2}$FT: Efficient, Scalable and Generalizable LLM Fine-tuning by Structured Sparsity

Current PEFT methods for LLMs can achieve either high quality, efficient training, or scalable serving, but not all three simultaneously. To address this limitation, we investigate sparse fine-tuning and observe a remarkable improvement in generalization ability. Utilizing this key insight, we propose a family of Structured Sparse Fine-Tuning (S$^{2}$FT) methods for LLMs, which concurrently achieve state-of-the-art fine-tuning performance, training efficiency, and inference scalability. S$^{2}$FT accomplishes this by "selecting sparsely and computing densely". It selects a few heads and channels in the MHA and FFN modules for each Transformer block, respectively. Next, it co-permutes weight matrices on both sides of the coupled structures in LLMs to connect the selected components in each layer into a dense submatrix. Finally, S$^{2}$FT performs in-place gradient updates on all submatrices. Through theoretical analysis and empirical results, our method prevents forgetting while simplifying optimization, delivers SOTA performance on both commonsense and arithmetic reasoning with 4.6% and 1.3% average improvements compared to LoRA, and surpasses full FT by 11.5% when generalizing to various domains after instruction tuning. Using our partial backpropagation algorithm, S$^{2}$FT saves training memory up to 3$\times$ and improves latency by 1.5-2.7$\times$ compared to full FT, while delivering an average 10% improvement over LoRA on both metrics. We further demonstrate that the weight updates in S$^{2}$FT can be decoupled into adapters, enabling effective fusion, fast switch, and efficient parallelism for serving multiple fine-tuned models.

cs.LG↗
arXiv2024

Order-Independence Without Fine Tuning

The development of generative language models that can create long and coherent textual outputs via autoregression has lead to a proliferation of uses and a corresponding sweep of analyses as researches work to determine the limitations of this new paradigm. Unlike humans, these 'Large Language Models' (LLMs) are highly sensitive to small changes in their inputs, leading to unwanted inconsistency in their behavior. One problematic inconsistency when LLMs are used to answer multiple-choice questions or analyze multiple inputs is order dependency: the output of an LLM can (and often does) change significantly when sub-sequences are swapped, despite both orderings being semantically identical. In this paper we present Set-Based Prompting, a technique that guarantees the output of an LLM will not have order dependence on a specified set of sub-sequences. We show that this method provably eliminates order dependency, and that it can be applied to any transformer-based LLM to enable text generation that is unaffected by re-orderings. Delving into the implications of our method, we show that, despite our inputs being out of distribution, the impact on expected accuracy is small, where the expectation is over the order of uniformly chosen shuffling of the candidate responses, and usually significantly less in practice. Thus, Set-Based Prompting can be used as a 'dropped-in' method on fully trained models. Finally, we discuss how our method's success suggests that other strong guarantees can be obtained on LLM performance via modifying the input representations.

cs.CL↗
arXiv2024

FactTest: Factuality Testing in Large Language Models with Finite-Sample and Distribution-Free Guarantees

The propensity of Large Language Models (LLMs) to generate hallucinations and non-factual content undermines their reliability in high-stakes domains, where rigorous control over Type I errors (the conditional probability of incorrectly classifying hallucinations as truthful content) is essential. Despite its importance, formal verification of LLM factuality with such guarantees remains largely unexplored. In this paper, we introduce FactTest, a novel framework that statistically assesses whether a LLM can confidently provide correct answers to given questions with high-probability correctness guarantees. We formulate factuality testing as hypothesis testing problem to enforce an upper bound of Type I errors at user-specified significance levels. Notably, we prove that our framework also ensures strong Type II error control under mild conditions and can be extended to maintain its effectiveness when covariate shifts exist. Our approach is distribution-free and works for any number of human-annotated samples. It is model-agnostic and applies to any black-box or white-box LM. Extensive experiments on question-answering (QA) and multiple-choice benchmarks demonstrate that FactTest effectively detects hallucinations and improves the model's ability to abstain from answering unknown questions, leading to an over 40% accuracy improvement.

cs.CL↗
arXiv2024

Calibrated Self-Rewarding Vision Language Models

Large Vision-Language Models (LVLMs) have made substantial progress by integrating pre-trained large language models (LLMs) and vision models through instruction tuning. Despite these advancements, LVLMs often exhibit the hallucination phenomenon, where generated text responses appear linguistically plausible but contradict the input image, indicating a misalignment between image and text pairs. This misalignment arises because the model tends to prioritize textual information over visual input, even when both the language model and visual representations are of high quality. Existing methods leverage additional models or human annotations to curate preference data and enhance modality alignment through preference optimization. These approaches may not effectively reflect the target LVLM's preferences, making the curated preferences easily distinguishable. Our work addresses these challenges by proposing the Calibrated Self-Rewarding (CSR) approach, which enables the model to self-improve by iteratively generating candidate responses, evaluating the reward for each response, and curating preference data for fine-tuning. In the reward modeling, we employ a step-wise strategy and incorporate visual constraints into the self-rewarding process to place greater emphasis on visual input. Empirical results demonstrate that CSR enhances performance and reduces hallucinations across ten benchmarks and tasks, achieving substantial improvements over existing methods by 7.62%. Our empirical results are further supported by rigorous theoretical analysis, under mild assumptions, verifying the effectiveness of introducing visual constraints into the self-rewarding paradigm. Additionally, CSR shows compatibility with different vision-language models and the ability to incrementally improve performance through iterative fine-tuning. Our data and code are available at https://github.com/YiyangZhou/CSR.

cs.LG↗
arXiv2024

RULE: Reliable Multimodal RAG for Factuality in Medical Vision Language Models

The recent emergence of Medical Large Vision Language Models (Med-LVLMs) has enhanced medical diagnosis. However, current Med-LVLMs frequently encounter factual issues, often generating responses that do not align with established medical facts. Retrieval-Augmented Generation (RAG), which utilizes external knowledge, can improve the factual accuracy of these models but introduces two major challenges. First, limited retrieved contexts might not cover all necessary information, while excessive retrieval can introduce irrelevant and inaccurate references, interfering with the model's generation. Second, in cases where the model originally responds correctly, applying RAG can lead to an over-reliance on retrieved contexts, resulting in incorrect answers. To address these issues, we propose RULE, which consists of two components. First, we introduce a provably effective strategy for controlling factuality risk through the calibrated selection of the number of retrieved contexts. Second, based on samples where over-reliance on retrieved contexts led to errors, we curate a preference dataset to fine-tune the model, balancing its dependence on inherent knowledge and retrieved contexts for generation. We demonstrate the effectiveness of RULE on medical VQA and report generation tasks across three datasets, achieving an average improvement of 47.4% in factual accuracy. We publicly release our benchmark and code in https://github.com/richard-peng-xia/RULE.

cs.LG↗